From a6ec4288a2232988b130b2f00bb2565f81706966 Mon Sep 17 00:00:00 2001
From: YurenHao0426 <blackhao0426@gmail.com>
Date: Mon, 29 Jun 2026 12:15:51 -0500
Subject: Recursive reasoning dynamics: analysis pipeline, paper drafts, toy
 models

Failure=more-chaotic (task-general under validity labeling) reduces to convergence/completeness
detection; mechanism (transient chaos vs multistability vs input-induced) under investigation.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
---
 analysis_2x2/dump_early_ckpts.sh | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)
 create mode 100755 analysis_2x2/dump_early_ckpts.sh

(limited to 'analysis_2x2/dump_early_ckpts.sh')

diff --git a/analysis_2x2/dump_early_ckpts.sh b/analysis_2x2/dump_early_ckpts.sh
new file mode 100755
index 0000000..1dfb722
--- /dev/null
+++ b/analysis_2x2/dump_early_ckpts.sh
@@ -0,0 +1,20 @@
+#!/usr/bin/env bash
+# Run after the early-save training: cheap forward dumps (connectivity + drift_zH + ans_drift,
+# NO JVP) on all saved early checkpoints, then pooled broken-vs-complete analysis.
+set -o pipefail
+cd /home/yurenh2/rrm/research/flossing
+source /home/yurenh2/miniconda3/etc/profile.d/conda.sh
+conda activate rrm
+export CUDA_VISIBLE_DEVICES="${1:-1}"
+CK=/home/yurenh2/rrm/trm/checkpoints/Maze-30x30-hard-1k-ACT-torch/maze_earlysave_freshTRM
+DATA=/home/yurenh2/rrm/data/maze-30x30-hard-1k
+OUT=analysis_2x2/maze_followup
+for f in "$CK"/step_*; do
+  s=$(basename "$f")
+  [[ -f "$OUT/earlydump_${s}.npz" ]] && { echo "skip $s"; continue; }
+  echo "=== dump $s ==="
+  python maze_pred_dump.py --ckpt-root "$CK" --ckpt-name "$s" --data "$DATA" \
+    --n 512 --seed 20260616 --out "$OUT/earlydump_${s}.npz" 2>&1 | tail -1
+done
+echo "=== pooled analysis ==="
+python analysis_2x2/analyze_early_connectivity.py
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