From 18c9c1c1d1ec31560c78d41f4ff6957339c1e7c7 Mon Sep 17 00:00:00 2001
From: YurenHao0426 <Blackhao0426@gmail.com>
Date: Wed, 22 Jul 2026 02:31:33 -0500
Subject: experiments: freeze mixed-traffic innovation confirmation

---
 experiments/c1_innovation_confirm.sh | 83 ++++++++++++++++++++++++++++++++++++
 1 file changed, 83 insertions(+)
 create mode 100755 experiments/c1_innovation_confirm.sh

(limited to 'experiments/c1_innovation_confirm.sh')

diff --git a/experiments/c1_innovation_confirm.sh b/experiments/c1_innovation_confirm.sh
new file mode 100755
index 0000000..82442e6
--- /dev/null
+++ b/experiments/c1_innovation_confirm.sh
@@ -0,0 +1,83 @@
+#!/usr/bin/env bash
+# Frozen five-seed test confirmation of innovation under endogenous apical traffic.
+# Usage: c1_innovation_confirm.sh <gpu> "<model seeds>"
+set -eu
+
+cd "$(dirname "$0")/.."
+GPU="${1:?GPU index required}"
+SEEDS="${2:-0 1 2 3 4}"
+PYTHON="${PYTHON:-/home/yurenh2/miniconda3/envs/ep_pascal/bin/python3}"
+
+run_one() {
+  model_seed="$1"
+  family="$2"
+  scale="$3"
+  traffic_seed="$4"
+  signal="$5"
+
+  use_residual=1
+  raw_control=none
+  p_neutral=1
+  case "$signal" in
+    raw)
+      use_residual=0
+      ;;
+    matched)
+      use_residual=0
+      raw_control=match_innovation_norm
+      ;;
+    residual)
+      ;;
+    taskfit)
+      p_neutral=0
+      ;;
+    *)
+      echo "unknown signal control: $signal" >&2
+      exit 2
+      ;;
+  esac
+
+  scale_tag="${scale//./p}"
+  tag="c1_confirm_v1_mnist_${family}_rho${scale_tag}_t${traffic_seed}_${signal}_d3_s${model_seed}"
+  out="results/${tag}.json"
+  if [ -s "$out" ]; then
+    echo "[$tag] exists; skipping"
+    return
+  fi
+
+  CUDA_VISIBLE_DEVICES="$GPU" "$PYTHON" experiments/run.py \
+    --mode sdil --dataset mnist --device cuda \
+    --depth 3 --width 256 --residual 1 --act tanh \
+    --epochs 15 --batch_size 128 --eta 0.05 --momentum 0.9 \
+    --eta_A 0.02 --eta_P 0.05 \
+    --pert_sigma 0.01 --pert_every 4 --pert_ndirs 1 \
+    --pert_mode simultaneous \
+    --traffic_mode "$family" --traffic_seed "$traffic_seed" --nuis_rho "$scale" \
+    --use_residual "$use_residual" --raw_scale_control "$raw_control" \
+    --learn_A 1 --learn_P 1 --p_neutral "$p_neutral" \
+    --p_warmup_steps 200 --p_warmup_eta 0.05 \
+    --val_examples 0 --eval_split test --eval_every 0 \
+    --diagnostics alignment --diagnostics_schedule final --probe_bs 512 \
+    --seed "$model_seed" --log_every 100000 --tag "$tag"
+}
+
+for seed in $SEEDS; do
+  # At rho=0, raw, norm-matched raw, and neutral-period innovation should agree.
+  for signal in raw matched residual; do
+    run_one "$seed" none 0 1234 "$signal"
+  done
+
+  # Levels and predictor timescale were selected on the training-only
+  # validation screens. Two independently seeded projections of each traffic
+  # construction are frozen here; no test result changes this matrix.
+  for spec in soma:0.5 topdown:0.2; do
+    IFS=: read -r family scale <<EOF
+$spec
+EOF
+    for traffic_seed in 1234 5678; do
+      for signal in raw matched residual taskfit; do
+        run_one "$seed" "$family" "$scale" "$traffic_seed" "$signal"
+      done
+    done
+  done
+done
-- 
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