diff options
Diffstat (limited to 'cachegpt')
1240 files changed, 629 insertions, 0 deletions
diff --git a/cachegpt/joblib/kg_rag/utility/get_GPT_response/func_code.py b/cachegpt/joblib/kg_rag/utility/get_GPT_response/func_code.py new file mode 100644 index 0000000..20a5bd9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_GPT_response/func_code.py @@ -0,0 +1,5 @@ +# first line: 222 +@memory.cache +def get_GPT_response(instruction, system_prompt, chat_model_id, chat_deployment_id, temperature=0): + res = fetch_GPT_response(instruction, system_prompt, chat_model_id, chat_deployment_id, temperature) + return res diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00c487f712aa6b6d165bb495b1b813ed/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00c487f712aa6b6d165bb495b1b813ed/metadata.json new file mode 100644 index 0000000..ac22132 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00c487f712aa6b6d165bb495b1b813ed/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4909825325012207, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and lung adenocarcinoma. Given list is: TERT, POU5F1B, PLG, IGF1R, LRMDA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989522.5116687}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00c487f712aa6b6d165bb495b1b813ed/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00c487f712aa6b6d165bb495b1b813ed/output.pkl Binary files differnew file mode 100644 index 0000000..ab31ed4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00c487f712aa6b6d165bb495b1b813ed/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00ecec3fbca0081c06e78276108339f0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00ecec3fbca0081c06e78276108339f0/metadata.json new file mode 100644 index 0000000..c39f0b9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00ecec3fbca0081c06e78276108339f0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5780329704284668, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and Takayasu's arteritis. Given list is: MORC4, STN1, ABO, HLA-B, PNPLA3\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048254.067119}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00ecec3fbca0081c06e78276108339f0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00ecec3fbca0081c06e78276108339f0/output.pkl Binary files differnew file mode 100644 index 0000000..1a7b51b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/00ecec3fbca0081c06e78276108339f0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/016b3a58c1949952b26da0be6f69b118/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/016b3a58c1949952b26da0be6f69b118/metadata.json new file mode 100644 index 0000000..7cefe1e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/016b3a58c1949952b26da0be6f69b118/metadata.json @@ -0,0 +1 @@ +{"duration": 1.0011720657348633, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and limited scleroderma. Given list is: SNCA, HLA-DQB1, TLR1, EPDR1, SHTN1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048252.4644246}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/016b3a58c1949952b26da0be6f69b118/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/016b3a58c1949952b26da0be6f69b118/output.pkl Binary files differnew file mode 100644 index 0000000..b052bc5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/016b3a58c1949952b26da0be6f69b118/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0197ebbf9b98aab5f2cdd687ffb606c3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0197ebbf9b98aab5f2cdd687ffb606c3/metadata.json new file mode 100644 index 0000000..6429771 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0197ebbf9b98aab5f2cdd687ffb606c3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9289059638977051, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Hodgkin's lymphoma, nodular sclerosis and Hodgkin's lymphoma. Given list is: HLA-DQB2, FADS2, GATA3, TM6SF2, CFH\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048188.8615403}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0197ebbf9b98aab5f2cdd687ffb606c3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0197ebbf9b98aab5f2cdd687ffb606c3/output.pkl Binary files differnew file mode 100644 index 0000000..5d27b7e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0197ebbf9b98aab5f2cdd687ffb606c3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/01e9a805f1a17a99be78703601bcb092/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/01e9a805f1a17a99be78703601bcb092/metadata.json new file mode 100644 index 0000000..ed3b6d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/01e9a805f1a17a99be78703601bcb092/metadata.json @@ -0,0 +1 @@ +{"duration": 0.43736791610717773, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with limited scleroderma and allergic rhinitis. Given list is: TLR1, WNT4, HLA-DPA1, PSCA, DTNB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988478.3549364}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/01e9a805f1a17a99be78703601bcb092/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/01e9a805f1a17a99be78703601bcb092/output.pkl Binary files differnew file mode 100644 index 0000000..211c690 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/01e9a805f1a17a99be78703601bcb092/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/021171af490f40d3986d5ee6a8f61945/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/021171af490f40d3986d5ee6a8f61945/metadata.json new file mode 100644 index 0000000..327c8de --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/021171af490f40d3986d5ee6a8f61945/metadata.json @@ -0,0 +1 @@ +{"duration": 0.43792152404785156, "input_args": {"instruction": "'Context: Disease ulcerative colitis associates Gene TNFSF15. Disease ulcerative colitis associates Gene IL10RA. Disease ulcerative colitis associates Gene WAS. Disease ulcerative colitis associates Gene IL10RB. Disease ulcerative colitis associates Gene IL23R. Variant rs11581607 associates Disease ulcerative colitis. Variant rs200349593 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL10. Variant rs41291790 associates Disease ulcerative colitis. Variant rs12568930 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene CCL20. Variant rs1830610 associates Disease ulcerative colitis. Variant rs4656958 associates Disease ulcerative colitis. Variant rs528766038 associates Disease ulcerative colitis. Variant rs5771069 associates Disease ulcerative colitis. Variant rs117506082 associates Disease ulcerative colitis. Variant rs113307843 associates Disease ulcerative colitis. Variant rs4380874 associates Disease ulcerative colitis. Variant rs2858829 associates Disease ulcerative colitis. Variant rs113986290 associates Disease ulcerative colitis. Variant rs55838263 associates Disease ulcerative colitis. Variant rs4957048 associates Disease ulcerative colitis. Gene MIR26B associates Disease ulcerative colitis. Gene MIR29A associates Disease ulcerative colitis. Variant rs2823286 associates Disease ulcerative colitis. Variant rs4077515 associates Disease ulcerative colitis. Variant rs11742570 associates Disease ulcerative colitis. Variant rs12946510 associates Disease ulcerative colitis. Variant rs1893217 associates Disease ulcerative colitis. Variant rs3194051 associates Disease ulcerative colitis. Variant rs4654903 associates Disease ulcerative colitis. Variant rs2111485 associates Disease ulcerative colitis. Variant rs13003464 associates Disease ulcerative colitis. Variant rs4246905 associates Disease ulcerative colitis. Variant rs12261843 associates Disease ulcerative colitis. Variant rs9263739 associates Disease ulcerative colitis. Variant rs9268853 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SMAD3. Variant rs2201841 associates Disease ulcerative colitis. Variant rs13048533 associates Disease ulcerative colitis. Variant rs145568234 associates Disease ulcerative colitis. Variant rs2918392 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene MMP24OS. Variant rs113010081 associates Disease ulcerative colitis. Variant rs11083840 associates Disease ulcerative colitis. Variant rs6920220 associates Disease ulcerative colitis. Variant rs3774959 associates Disease ulcerative colitis. Variant rs2395185 associates Disease ulcerative colitis. Variant rs4654925 associates Disease ulcerative colitis. Variant rs56167332 associates Disease ulcerative colitis. Variant rs4409764 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SLC39A11. Variant rs2155219 associates Disease ulcerative colitis. Variant rs12942547 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TET2. Disease ulcerative colitis associates Gene HLA-DQA1. Variant rs4817983 associates Disease ulcerative colitis. Variant rs4065985 associates Disease ulcerative colitis. Variant rs395157 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene INTS11. Variant rs2838519 associates Disease ulcerative colitis. Variant rs3197999 associates Disease ulcerative colitis. Variant rs17207986 associates Disease ulcerative colitis. Variant rs661054 associates Disease ulcerative colitis. Variant rs11209026 associates Disease ulcerative colitis.. Variant rs4722672 associates Disease ulcerative colitis. Variant rs9858542 associates Disease ulcerative colitis. Variant HLA-DRB1*0103 associates Disease ulcerative colitis. Variant rs12149608 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene ADCY7. Variant rs3024493 associates Disease ulcerative colitis. Gene MIR4284 associates Disease ulcerative colitis. Gene MIR335 associates Disease ulcerative colitis. Variant rs11676348 associates Disease ulcerative colitis. Variant rs6584283 associates Disease ulcerative colitis. Variant rs116392568 associates Disease inflammatory bowel disease. Variant rs11677953 associates Disease inflammatory bowel disease. Variant rs11681525 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene HLA-DRB1. Variant rs4656958 associates Disease inflammatory bowel disease. Variant rs11612508 associates Disease inflammatory bowel disease. Variant rs12654812 associates Disease inflammatory bowel disease. Variant rs142738614 associates Disease inflammatory bowel disease. Variant rs11641016 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene DNMT3B. Variant rs11672983 associates Disease inflammatory bowel disease. Variant rs12585310 associates Disease inflammatory bowel disease. Variant rs11581607 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene TNFSF15. Variant rs12722515 associates Disease inflammatory bowel disease. Variant rs4551125 associates Disease inflammatory bowel disease. Variant rs56167332 associates Disease inflammatory bowel disease. Variant rs1250550 associates Disease inflammatory bowel disease. Variant rs568879359 associates Disease inflammatory bowel disease. Variant rs13333062 associates Disease inflammatory bowel disease. Variant rs1420098 associates Disease inflammatory bowel disease. Variant rs12568930 associates Disease inflammatory bowel disease. Variant rs2651244 associates Disease inflammatory bowel disease. Variant rs5743626 associates Disease inflammatory bowel disease. Variant rs1250546 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene HLA-B. Disease inflammatory bowel disease associates Gene WAS. Disease inflammatory bowel disease associates Gene IL10RA. Variant rs530302888 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene SAA2. Variant rs5843596 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene SAA1. Variant rs6556412 associates Disease inflammatory bowel disease. Variant rs11743851 associates Disease inflammatory bowel disease. Variant rs4077515 associates Disease inflammatory bowel disease. Variant rs12946510 associates Disease inflammatory bowel disease. Variant rs13126505 associates Disease inflammatory bowel disease. Variant rs56116661 associates Disease inflammatory bowel disease. Variant rs55722650 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL10. Variant rs11548656 associates Disease inflammatory bowel disease. Variant rs139073251 associates Disease inflammatory bowel disease. Variant rs16953946 associates Disease inflammatory bowel disease. Variant rs11554257 associates Disease inflammatory bowel disease. Variant rs5763767 associates Disease inflammatory bowel disease. Variant rs3853824 associates Disease inflammatory bowel disease. Variant rs76527535 associates Disease inflammatory bowel disease. Variant rs5743289 associates Disease inflammatory bowel disease. Variant rs886057005 associates Disease inflammatory bowel disease. Variant chr9:5057580 associates Disease inflammatory bowel disease. Variant rs6586030 associates Disease inflammatory bowel disease. Variant rs4676410 associates Disease inflammatory bowel disease. Variant rs1569328 associates Disease inflammatory bowel disease. Variant rs1250566 associates Disease inflammatory bowel disease. Variant chr5:17098189 associates Disease inflammatory bowel disease. Variant rs11741861 associates Disease inflammatory bowel disease. Variant rs56399423 associates Disease inflammatory bowel disease. Variant rs4676408 associates Disease inflammatory bowel disease. Variant rs4256018 associates Disease inflammatory bowel disease. Variant rs746523858 associates Disease inflammatory bowel disease. Variant rs6651252 associates Disease inflammatory bowel disease. Variant rs395157 associates Disease inflammatory bowel disease. Variant rs886057007 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene TCF4. Variant rs4409764 associates Disease inflammatory bowel disease. Variant rs254560 associates Disease inflammatory bowel disease. Variant rs11742570 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene SLC39A11. Variant rs2153283 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene CDYL2. Variant rs9557195 associates Disease inflammatory bowel disease. Variant rs1569723 associates Disease inflammatory bowel disease. Variant rs6142618 associates Disease inflammatory bowel disease. Variant rs11879191 associates Disease inflammatory bowel disease. Variant rs12720356 associates Disease inflammatory bowel disease. \\nQuestion: Out of the given list, which Gene is associated with ulcerative colitis and inflammatory bowel disease. Given list is: SAMD9L, IL23R, GATA3, DNMT3A, RAD51B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990125.1709936}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/021171af490f40d3986d5ee6a8f61945/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/021171af490f40d3986d5ee6a8f61945/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/021171af490f40d3986d5ee6a8f61945/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03816f1c280ab2fedd694da3415af84b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03816f1c280ab2fedd694da3415af84b/metadata.json new file mode 100644 index 0000000..fa8213f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03816f1c280ab2fedd694da3415af84b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7349417209625244, "input_args": {"instruction": "'Context: Variant rs2294008 associates Disease duodenal ulcer.. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene ABO. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer presents Symptom Dyspepsia. Compound Vonoprazan treats Disease duodenal ulcer. Disease duodenal ulcer localizes Anatomy gastric juice. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer localizes Anatomy vagus nerve. Compound 4-Aminosalicylic acid contraindicates Disease duodenal ulcer. Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene DEFB121. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene PLCE1. Disease gastric fundus cancer associates Gene MUC1. Disease gastric fundus cancer associates Gene PRKAA1. \\nQuestion: Out of the given list, which Variant is associated with duodenal ulcer and gastric fundus cancer. Given list is: rs2294008, rs10490924, rs2738048, rs711830, rs167479'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048933.8352122}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03816f1c280ab2fedd694da3415af84b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03816f1c280ab2fedd694da3415af84b/output.pkl Binary files differnew file mode 100644 index 0000000..0cdc09d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03816f1c280ab2fedd694da3415af84b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03ef42869c995dd9db21443c12ba2f18/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03ef42869c995dd9db21443c12ba2f18/metadata.json new file mode 100644 index 0000000..6e44fa0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03ef42869c995dd9db21443c12ba2f18/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6266653537750244, "input_args": {"instruction": "'Context: Disease pancreatic carcinoma associates Gene ABO. Disease pancreatic carcinoma associates Gene CCDC68. Variant rs543259829 associates Disease pancreatic carcinoma. Variant rs9581943 associates Disease pancreatic carcinoma. Variant rs1568205026 associates Disease pancreatic carcinoma. Variant rs9543325 associates Disease pancreatic carcinoma. Variant rs886038068 associates Disease pancreatic carcinoma. Variant rs4795218 associates Disease pancreatic carcinoma. Variant rs587776650 associates Disease pancreatic carcinoma. Variant rs886059211 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene KRT8. Variant rs139569694 associates Disease pancreatic carcinoma. Variant rs539739051 associates Disease pancreatic carcinoma. Variant rs886059208 associates Disease pancreatic carcinoma. Variant rs796761323 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene C9. Variant rs587780192 associates Disease pancreatic carcinoma. Variant rs66562280 associates Disease pancreatic carcinoma. Variant rs555607708 associates Disease pancreatic carcinoma. Variant rs81002812 associates Disease pancreatic carcinoma. Variant rs542392980 associates Disease pancreatic carcinoma. Variant rs1486134 associates Disease pancreatic carcinoma. Variant rs587781633 associates Disease pancreatic carcinoma. Variant rs60579835 associates Disease pancreatic carcinoma. Variant rs879254095 associates Disease pancreatic carcinoma. Variant rs121434388 associates Disease pancreatic carcinoma. Variant rs6971499 associates Disease pancreatic carcinoma. Variant rs2255280 associates Disease pancreatic carcinoma. Variant rs11876384 associates Disease pancreatic carcinoma. Variant rs387906389 associates Disease pancreatic carcinoma. Variant rs17688601 associates Disease pancreatic carcinoma. Variant rs121434220 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene PKN1. Variant rs183117027 associates Disease pancreatic carcinoma. Variant rs16986825 associates Disease pancreatic carcinoma. Variant rs41286296 associates Disease pancreatic carcinoma. Variant rs147621330 associates Disease pancreatic carcinoma. Variant rs11655237 associates Disease pancreatic carcinoma. Variant rs2080764943 associates Disease pancreatic carcinoma. Variant rs80358972 associates Disease pancreatic carcinoma. Variant rs80359306 associates Disease pancreatic carcinoma. Variant rs9554197 associates Disease pancreatic carcinoma. Variant rs28364802 associates Disease pancreatic carcinoma. Variant rs138213197 associates Disease pancreatic carcinoma. Variant rs962856 associates Disease pancreatic carcinoma. Variant rs41293511 associates Disease pancreatic carcinoma. Variant rs281875322 associates Disease pancreatic carcinoma. Variant rs548068667 associates Disease pancreatic carcinoma. Variant rs764884641 associates Disease pancreatic carcinoma. Variant rs121912578 associates Disease pancreatic carcinoma. Variant rs121913049 associates Disease pancreatic carcinoma. Variant chr14:104000802 associates Disease pancreatic carcinoma. Variant rs139770721 associates Disease pancreatic carcinoma. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene CDKN2B. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene EP300. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer localizes Anatomy ventral pancreatic duct. Disease duodenal ulcer localizes Anatomy pancreatic juice. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer localizes Anatomy pancreas. Disease duodenal ulcer localizes Anatomy common bile duct. Disease duodenal ulcer presents Symptom Abdominal Pain. Disease duodenal ulcer associates Gene JRK. \\nQuestion: Out of the given list, which Gene is associated with pancreatic carcinoma and duodenal ulcer. Given list is: ABO, CRTC1, CACNB2, PSCA, CDK8'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048137.3599474}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03ef42869c995dd9db21443c12ba2f18/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03ef42869c995dd9db21443c12ba2f18/output.pkl Binary files differnew file mode 100644 index 0000000..d1c04d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/03ef42869c995dd9db21443c12ba2f18/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/04ad3fca2b04cf347110ba35b1b0ba89/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/04ad3fca2b04cf347110ba35b1b0ba89/metadata.json new file mode 100644 index 0000000..73dbb62 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/04ad3fca2b04cf347110ba35b1b0ba89/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6163911819458008, "input_args": {"instruction": "'Context: Disease ankylosing spondylitis associates Gene IL23R. Disease ankylosing spondylitis associates Gene IL27. Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene IL1A. Disease ankylosing spondylitis associates Gene IL12B. Disease ankylosing spondylitis associates Gene SAA2. Disease ankylosing spondylitis associates Gene IL6R. Variant rs1250550 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R1. Disease ankylosing spondylitis associates Gene IL1R2. Disease ankylosing spondylitis associates Gene SAA1. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs1801274 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs4676410 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs148783236 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene USP8. Disease ankylosing spondylitis associates Gene TNFRSF1A. Disease ankylosing spondylitis associates Gene BACH2. Variant rs17095830 associates Disease ankylosing spondylitis. Variant rs27529 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SH2B3. Variant rs13001372 associates Disease ankylosing spondylitis. Variant rs2910686 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs117486637 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene STAT3. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs6871626 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL17A. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs10865331 associates Disease ankylosing spondylitis. Variant rs8070463 associates Disease ankylosing spondylitis. Variant rs2394250 associates Disease ankylosing spondylitis. Variant HLA-B*2705 associates Disease ankylosing spondylitis. Variant HLA-B*2702 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs1128905 associates Disease ankylosing spondylitis. Variant rs6600247 associates Disease ankylosing spondylitis. Variant rs10045403 associates Disease ankylosing spondylitis. Disease inflammatory bowel disease associates Gene DUSP29. Disease inflammatory bowel disease associates Gene DUSP16. Disease inflammatory bowel disease associates Gene SAA2. Variant rs2266961 associates Disease inflammatory bowel disease. Variant rs2266959 associates Disease inflammatory bowel disease. Variant rs5843596 associates Disease inflammatory bowel disease. Variant rs142738614 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene SPATA48. Disease inflammatory bowel disease associates Gene SAA1. Disease inflammatory bowel disease associates Gene PTPN2. Variant rs2188962 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL23R. Disease inflammatory bowel disease associates Gene IL2RA. Variant rs3853824 associates Disease inflammatory bowel disease. Variant rs5743626 associates Disease inflammatory bowel disease. Variant rs886057005 associates Disease inflammatory bowel disease. Variant rs1420098 associates Disease inflammatory bowel disease. Variant rs886057007 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL21. Disease inflammatory bowel disease associates Gene SH2B3. Disease inflammatory bowel disease associates Gene IL27. Variant rs12654812 associates Disease inflammatory bowel disease. Variant rs530302888 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene ATXN2L. Variant rs139073251 associates Disease inflammatory bowel disease. Variant rs11672983 associates Disease inflammatory bowel disease. Variant rs59998884 associates Disease inflammatory bowel disease. Variant rs12585310 associates Disease inflammatory bowel disease. Variant rs2836878 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene HLA-B. Variant rs12722515 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene CDYL2. Variant rs4692386 associates Disease inflammatory bowel disease. Variant rs2836883 associates Disease inflammatory bowel disease. Variant rs11677953 associates Disease inflammatory bowel disease. Variant rs5743289 associates Disease inflammatory bowel disease. Variant chr5:17098189 associates Disease inflammatory bowel disease. Variant rs12568930 associates Disease inflammatory bowel disease. Variant rs4656958 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene HLA-DRB1. Variant rs4256018 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene SEMA6D. Disease inflammatory bowel disease associates Gene CD226. Disease inflammatory bowel disease associates Gene LPP. Disease inflammatory bowel disease associates Gene SH2B1. Variant rs59536457 associates Disease inflammatory bowel disease. Variant rs148319899 associates Disease inflammatory bowel disease. Variant rs6651252 associates Disease inflammatory bowel disease. Variant rs6142618 associates Disease inflammatory bowel disease. Variant rs4380874 associates Disease inflammatory bowel disease. Variant rs13333062 associates Disease inflammatory bowel disease. Variant rs2328546 associates Disease inflammatory bowel disease. Variant rs4246215 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene ATXN2. Disease inflammatory bowel disease associates Gene TNFSF15. Variant rs1260326 associates Disease inflammatory bowel disease. Variant rs9889296 associates Disease inflammatory bowel disease. Variant rs59043219 associates Disease inflammatory bowel disease. Variant rs1250546 associates Disease inflammatory bowel disease. Variant rs2153283 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene PYGO2. Disease inflammatory bowel disease associates Gene HLA-DQA1. Disease inflammatory bowel disease associates Gene ADCY7. Disease inflammatory bowel disease associates Gene STXBP2. Disease inflammatory bowel disease associates Gene TNFAIP3. Variant rs35164067 associates Disease inflammatory bowel disease. Variant rs5763767 associates Disease inflammatory bowel disease. Variant rs9557207 associates Disease inflammatory bowel disease. Variant rs6058869 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene ADCY3. Variant rs2279990 associates Disease inflammatory bowel disease. Variant rs144344067 associates Disease inflammatory bowel disease. Variant rs116392568 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene WAS. Variant rs13204742 associates Disease inflammatory bowel disease. \\nQuestion: Out of the given list, which Gene is associated with ankylosing spondylitis and inflammatory bowel disease. Given list is: LPP, UCK2, YLPM1, DAB2IP, IL23R'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989884.4707088}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/04ad3fca2b04cf347110ba35b1b0ba89/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/04ad3fca2b04cf347110ba35b1b0ba89/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/04ad3fca2b04cf347110ba35b1b0ba89/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/05076e4a74ce67f529354d03fde96c04/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/05076e4a74ce67f529354d03fde96c04/metadata.json new file mode 100644 index 0000000..ebff7b7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/05076e4a74ce67f529354d03fde96c04/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6478068828582764, "input_args": {"instruction": "'Context: Disease central nervous system cancer associates Gene PALB2. Variant rs59060240 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRCA2. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene OFD1. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene KRAS. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene APC2. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene APC. Disease central nervous system cancer associates Gene ARMC5. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TUBB. Variant rs2157719 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene BDNF. Disease central nervous system cancer associates Gene CHEK2. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene POLR2A. Disease central nervous system cancer associates Gene SMARCB1. Disease central nervous system cancer associates Gene BRAF. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RAF1. Disease central nervous system cancer associates Gene SMARCA4. Disease central nervous system cancer associates Gene KIAA0753. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene NUTM1. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NRAS. Variant rs12230172 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene RTEL1. Disease central nervous system cancer associates Gene YY1. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GRN. Disease central nervous system cancer associates Gene GPC3. Disease central nervous system cancer associates Gene GPC4. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene PDCD10. Disease central nervous system cancer associates Gene BRD4. Disease central nervous system cancer associates Gene TSC2. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene GLI2. Disease central nervous system cancer associates Gene ASCL1. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene TREM2. Variant rs1920116 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EPHB2. Disease central nervous system cancer associates Gene CPLANE1. Disease central nervous system cancer associates Gene ALX1. Variant rs75061358 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GLI3. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene CDKN1B. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene ATM. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs13314271 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs397507484 associates Disease lung adenocarcinoma. Variant rs876659802 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs5879422 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs397507483 associates Disease lung adenocarcinoma. Variant rs876659675 associates Disease lung adenocarcinoma. Variant rs587782664 associates Disease lung adenocarcinoma. Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs138729528 associates Disease lung adenocarcinoma. Variant rs113488022 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs876660807 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Variant rs11591710 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs11554290 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs11639372 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs28933406 associates Disease lung adenocarcinoma. Variant rs11610143 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs530941076 associates Disease lung adenocarcinoma. Variant rs1057519895 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs397507546 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs28929495 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs150036236 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs587776805 associates Disease lung adenocarcinoma. Gene MIR592 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and lung adenocarcinoma. Given list is: ADGRG6, CDKAL1, TERT, HLA-DPA1, BRCA2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048004.2700546}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/05076e4a74ce67f529354d03fde96c04/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/05076e4a74ce67f529354d03fde96c04/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/05076e4a74ce67f529354d03fde96c04/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/064d5297f2c6aa0aeed77d4a65ae7f84/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/064d5297f2c6aa0aeed77d4a65ae7f84/metadata.json new file mode 100644 index 0000000..8e5b7f0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/064d5297f2c6aa0aeed77d4a65ae7f84/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5815677642822266, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and lung carcinoma. Given list is: LPP, TENM2, DMRT1, TERT, UCK2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048660.0136328}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/064d5297f2c6aa0aeed77d4a65ae7f84/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/064d5297f2c6aa0aeed77d4a65ae7f84/output.pkl Binary files differnew file mode 100644 index 0000000..45aad97 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/064d5297f2c6aa0aeed77d4a65ae7f84/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/072623f28ec40919b2ef77a194d46dfd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/072623f28ec40919b2ef77a194d46dfd/metadata.json new file mode 100644 index 0000000..a610e96 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/072623f28ec40919b2ef77a194d46dfd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.607431173324585, "input_args": {"instruction": "'Context: Variant rs10455872 associates Disease aortic valve stenosis. Variant rs174547 associates Disease aortic valve stenosis. Variant rs7543130 associates Disease aortic valve stenosis. Variant rs1830321 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene SLC2A10. Disease aortic valve stenosis associates Gene ADAMTS10. Gene MIR3663 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene ADAMTSL2. Disease aortic valve stenosis associates Gene B4GALT7. Disease aortic valve stenosis associates Gene ANKS6. Gene MIR3138 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene ACTB. Disease aortic valve stenosis associates Gene HAAO. Gene MIR636 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene LMNA. Gene MIR575 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene FADS2. Disease aortic valve stenosis associates Gene FBN1. Gene MIR424 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene LTBP2. Disease aortic valve stenosis associates Gene LPA. Disease aortic valve stenosis associates Gene CYP24A1. Disease aortic valve stenosis associates Gene GBA1. Gene MIR718 associates Disease aortic valve stenosis. Gene MIR630 associates Disease aortic valve stenosis. Gene MIR148A associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene NOTCH2. Disease aortic valve stenosis associates Gene FADS1. Disease aortic valve stenosis associates Gene FGFR1. Gene MIR382 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene FLI1. Disease aortic valve stenosis associates Gene AMER1. Disease aortic valve stenosis associates Gene NR2F2. Disease aortic valve stenosis associates Gene ELN. Gene MIR146B associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene GLB1. Disease aortic valve stenosis associates Gene VWF. Disease aortic valve stenosis associates Gene ZMPSTE24. Gene MIR26A2 associates Disease aortic valve stenosis. Gene MIR31 associates Disease aortic valve stenosis. Gene MIR141 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene NOTCH1. Gene MIR26A1 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene SCN1B. Disease cerebral infarction associates Gene ALOX5AP. Disease cerebral infarction associates Gene NOS3. Gene MIR124-3 associates Disease cerebral infarction. Disease cerebral infarction localizes Anatomy common carotid artery plus branches. Gene MIR149 associates Disease cerebral infarction. Gene MIR124-2 associates Disease cerebral infarction. Gene MIR491 associates Disease cerebral infarction. Disease cerebral infarction localizes Anatomy anterior cerebral artery. Gene MIR146A associates Disease cerebral infarction. Gene MIR196A1 associates Disease cerebral infarction. Gene MIR210 associates Disease cerebral infarction. Disease cerebral infarction localizes Anatomy posterior cerebral artery. Gene MIR21 associates Disease cerebral infarction. Disease cerebral infarction localizes Anatomy internal carotid artery. Gene MIR196A2 associates Disease cerebral infarction. Disease cerebral infarction associates Gene F5. Disease cerebral infarction associates Gene F2. Disease cerebral infarction localizes Anatomy subclavian artery. Disease cerebral infarction localizes Anatomy vertebral artery. Disease anterior cerebral artery infarction isa Disease cerebral infarction. Disease cerebral infarction localizes Anatomy middle cerebral artery. Disease cerebral infarction associates Gene PRKCH. Disease cerebral infarction localizes Anatomy cerebral artery. Disease posterior cerebral artery infarction isa Disease cerebral infarction. Disease cerebral infarction localizes Anatomy carotid artery segment. Disease cerebral infarction localizes Anatomy spinal nucleus of trigeminal nerve. Disease middle cerebral artery infarction isa Disease cerebral infarction. Disease ontology identifier of cerebral infarction is DOID:3526. Disease cerebral infarction localizes Anatomy temporal artery. Disease cerebral infarction localizes Anatomy brachiocephalic artery. \\nQuestion: Out of the given list, which Variant is associated with aortic stenosis and large artery stroke. Given list is: rs34243448, rs1893592, rs1765871, rs229541, rs10455872'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050482.760827}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/072623f28ec40919b2ef77a194d46dfd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/072623f28ec40919b2ef77a194d46dfd/output.pkl Binary files differnew file mode 100644 index 0000000..f87cfbc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/072623f28ec40919b2ef77a194d46dfd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07b92d911ac47435c5760e560e571757/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07b92d911ac47435c5760e560e571757/metadata.json new file mode 100644 index 0000000..0099a67 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07b92d911ac47435c5760e560e571757/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6401617527008057, "input_args": {"instruction": "'Context: Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene PLCE1. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene MUC1. Disease gastric fundus cancer associates Gene PRKAA1. Disease gastric fundus cancer associates Gene DEFB121. Variant rs2294008 associates Disease duodenal ulcer.. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer associates Gene XYLT2. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer associates Gene EP300. Compound Vonoprazan treats Disease duodenal ulcer. Disease duodenal ulcer localizes Anatomy gastric juice. Disease duodenal ulcer localizes Anatomy vagus nerve. Compound 4-Aminosalicylic acid contraindicates Disease duodenal ulcer. \\nQuestion: Out of the given list, which Variant is associated with gastric fundus cancer and duodenal ulcer. Given list is: rs11759064, rs975730, rs1150757, rs2294008, rs7453920'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049047.9451287}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07b92d911ac47435c5760e560e571757/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07b92d911ac47435c5760e560e571757/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07b92d911ac47435c5760e560e571757/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07c813dc49fc564d84fd1bc137521d82/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07c813dc49fc564d84fd1bc137521d82/metadata.json new file mode 100644 index 0000000..e4524e8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07c813dc49fc564d84fd1bc137521d82/metadata.json @@ -0,0 +1 @@ +{"duration": 23.876996994018555, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with skin sensitivity to sun and keratinocyte carcinoma\"@e. Given list is: rs1042704, rs6059655, rs34396849, rs10052804, rs11747125'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049109.2805536}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07c813dc49fc564d84fd1bc137521d82/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07c813dc49fc564d84fd1bc137521d82/output.pkl Binary files differnew file mode 100644 index 0000000..b32ca8e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/07c813dc49fc564d84fd1bc137521d82/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/088436d493962e400d996e75fda0805e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/088436d493962e400d996e75fda0805e/metadata.json new file mode 100644 index 0000000..0ebcc45 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/088436d493962e400d996e75fda0805e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6263470649719238, "input_args": {"instruction": "'Context: Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs150036236 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs397507484 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs397507483 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs104894229 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs4324798 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs13314271 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs104894230 associates Disease lung adenocarcinoma. Variant rs113488022 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs2179920 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs1057519998 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs1057519895 associates Disease lung adenocarcinoma. Variant rs397507546 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs147001633 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs121913273 associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs121913496 associates Disease lung adenocarcinoma. Variant rs1057519816 associates Disease lung adenocarcinoma. Variant rs863224451 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs1057519854 associates Disease lung adenocarcinoma. Variant rs5879422 associates Disease lung adenocarcinoma. Variant rs587782664 associates Disease lung adenocarcinoma. Variant rs28929495 associates Disease lung adenocarcinoma. Variant rs1057519883 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs1057519879 associates Disease lung adenocarcinoma. Variant rs121913499 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs1057519881 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs1057519923 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs121913279 associates Disease lung adenocarcinoma. Variant rs397516896 associates Disease lung adenocarcinoma. Variant rs1554350382 associates Disease lung adenocarcinoma. Variant rs59060240 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Variant rs6010620 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Variant rs2736100 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Variant rs498872 associates Disease central nervous system cancer. Variant rs111696067 associates Disease central nervous system cancer. Variant rs35850753 associates Disease central nervous system cancer. Variant rs2157719 associates Disease central nervous system cancer. Variant rs1920116 associates Disease central nervous system cancer. Variant rs12230172 associates Disease central nervous system cancer. Variant rs2853676 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Variant rs8753 associates Disease central nervous system cancer. Variant rs12803321 associates Disease central nervous system cancer. Variant rs75061358 associates Disease central nervous system cancer. Variant rs648044 associates Disease central nervous system cancer. Variant rs1412829 associates Disease central nervous system cancer. Variant rs2236507 associates Disease central nervous system cancer. Variant rs1801591 associates Disease central nervous system cancer. Variant rs4809324 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene SLC25A11. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene NRAS. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene TSC2. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene VCP. Disease central nervous system cancer associates Gene ALX3. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene PDCD10. Disease central nervous system cancer associates Gene SDHB. Disease central nervous system cancer associates Gene GNAS. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene ASCL1. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene RAF1. Disease central nervous system cancer associates Gene SDHD. Disease central nervous system cancer associates Gene SDHC. Disease central nervous system cancer associates Gene ALX1. Disease central nervous system cancer associates Gene EDN3. Disease central nervous system cancer associates Gene LMNA. Disease central nervous system cancer associates Gene APC2. Disease central nervous system cancer associates Gene SDHA. Disease central nervous system cancer associates Gene SETD2. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene ADAMTS3. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene CHEK2. Disease central nervous system cancer associates Gene SDHAF2. Disease central nervous system cancer associates Gene POLD1. \\nQuestion: Out of the given list, which Variant is associated with lung adenocarcinoma and central nervous system cancer. Given list is: rs10490924, rs10830962, rs2736100, rs2391769, rs9272143'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049046.2583134}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/088436d493962e400d996e75fda0805e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/088436d493962e400d996e75fda0805e/output.pkl Binary files differnew file mode 100644 index 0000000..919d9f3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/088436d493962e400d996e75fda0805e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0936a9b4163b0ea9e1d67ef957424d2a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0936a9b4163b0ea9e1d67ef957424d2a/metadata.json new file mode 100644 index 0000000..ea1857c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0936a9b4163b0ea9e1d67ef957424d2a/metadata.json @@ -0,0 +1 @@ +{"duration": 4.3964903354644775, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with intracranial aneurysm and dengue hemorrhagic fever. Given list is: RP1, IGF1R, BABAM1, DLEU7, ATG5'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990178.4370673}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0936a9b4163b0ea9e1d67ef957424d2a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0936a9b4163b0ea9e1d67ef957424d2a/output.pkl Binary files differnew file mode 100644 index 0000000..10e4c9d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0936a9b4163b0ea9e1d67ef957424d2a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/094f75bb6bb024ac5c440e460546b33f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/094f75bb6bb024ac5c440e460546b33f/metadata.json new file mode 100644 index 0000000..e824907 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/094f75bb6bb024ac5c440e460546b33f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5598418712615967, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with androgenic alopecia and cocaine dependence. Given list is: GSDMB, SLC14A2, ATXN2, PNPLA3, PRKACB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990187.8055103}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/094f75bb6bb024ac5c440e460546b33f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/094f75bb6bb024ac5c440e460546b33f/output.pkl Binary files differnew file mode 100644 index 0000000..bca316e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/094f75bb6bb024ac5c440e460546b33f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/09873c53b658bc2849fd690ec2ad4f25/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/09873c53b658bc2849fd690ec2ad4f25/metadata.json new file mode 100644 index 0000000..7d95796 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/09873c53b658bc2849fd690ec2ad4f25/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6400363445281982, "input_args": {"instruction": "'Context: Disease androgenic alopecia associates Gene SLC14A2. Variant rs1819008 associates Disease androgenic alopecia. Variant rs143149578 associates Disease androgenic alopecia. Variant rs7061504 associates Disease androgenic alopecia. Variant rs35892873 associates Disease androgenic alopecia. Variant rs11694173 associates Disease androgenic alopecia. Variant rs200644307 associates Disease androgenic alopecia. Variant rs11037975 associates Disease androgenic alopecia. Variant rs6047844 associates Disease androgenic alopecia. Variant rs11593840 associates Disease androgenic alopecia. Variant rs1160312 associates Disease androgenic alopecia. Disease androgenic alopecia associates Gene WNT10A. Variant rs9287638 associates Disease androgenic alopecia. Variant rs12203592 associates Disease androgenic alopecia. Variant rs78311490 associates Disease androgenic alopecia. Variant rs3781458 associates Disease androgenic alopecia. Variant rs191648835 associates Disease androgenic alopecia. Variant rs115182912 associates Disease androgenic alopecia. Variant rs9282858 associates Disease androgenic alopecia. Variant rs144149795 associates Disease androgenic alopecia. Variant rs3781452 associates Disease androgenic alopecia. Variant rs2180439 associates Disease androgenic alopecia. Variant rs11087368 associates Disease androgenic alopecia. Variant rs4679956 associates Disease androgenic alopecia. Variant rs2149150 associates Disease androgenic alopecia. Variant rs62146540 associates Disease androgenic alopecia. Variant rs9314998 associates Disease androgenic alopecia. Variant rs182973285 associates Disease androgenic alopecia. Variant rs11684254 associates Disease androgenic alopecia. Variant rs572756998 associates Disease androgenic alopecia. Disease androgenic alopecia associates Gene EDAR. Variant rs12902958 associates Disease androgenic alopecia. Variant rs71421546 associates Disease androgenic alopecia. Variant rs9719620 associates Disease androgenic alopecia. Variant rs552649178 associates Disease androgenic alopecia. Variant rs34991987 associates Disease androgenic alopecia. Variant rs61835088 associates Disease cocaine dependence.. Disease cocaine dependence associates Gene FAM53B. Disease cocaine dependence associates Gene FAM78B. Variant rs2825295 associates Disease cocaine dependence. Variant rs2629540 associates Disease cocaine dependence. Disease cocaine dependence localizes Anatomy strand of hair. Disease cocaine dependence presents Symptom Akathisia, Drug-Induced. Disease ontology identifier of cocaine dependence is DOID:9975. Compound (1S,2S,6R,14R,15S,16R)-5-(cyclopropylmethyl)-16-[(2S)-2-hydroxy-3,3-dimethylbutan-2-yl]-15-methoxy-13-oxa-5-azahexacyclo[13.2.2.12,8.01,6.02,14.012,20]icosa-8(20),9,11-trien-11-ol treats Disease cocaine dependence. Disease cocaine dependence presents Symptom Hypesthesia. Disease cocaine dependence presents Symptom Athetosis. Disease cocaine dependence presents Symptom Dyskinesia, Drug-Induced. Disease cocaine dependence localizes Anatomy brain. Compound Nefazodone treats Disease cocaine dependence. \\nQuestion: Out of the given list, which Gene is associated with androgenic alopecia and cocaine dependence. Given list is: GSDMB, SLC14A2, ATXN2, PNPLA3, PRKACB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047784.2986999}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/09873c53b658bc2849fd690ec2ad4f25/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/09873c53b658bc2849fd690ec2ad4f25/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/09873c53b658bc2849fd690ec2ad4f25/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a19811756a78eb5a38b3f29283de35e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a19811756a78eb5a38b3f29283de35e/metadata.json new file mode 100644 index 0000000..f294612 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a19811756a78eb5a38b3f29283de35e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.3998119831085205, "input_args": {"instruction": "'Context: Disease ontology identifier of psoriasis 4 is DOID:0111280. Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene PPP1R10. Disease psoriatic arthritis associates Gene HLA-C. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Disease psoriatic arthritis associates Gene IL13. Disease psoriatic arthritis associates Gene IL12B. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MFSD4B. Variant rs33980500 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Gene MIR424 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Disease psoriasis 1 associates Gene HLA-C.. Variant rs11653893 associates Disease psoriasis 2.. Variant rs11652075 associates Disease psoriasis 2. Variant rs281875213 associates Disease psoriasis 2. Variant rs281875215 associates Disease psoriasis 2. Disease psoriasis 13 associates Gene TRAF3IP2.. \\nQuestion: Out of the given list, which Gene is associated with psoriasis and psoriatic arthritis. Given list is: IGF2BP2, GRAMD1B, TNRC18, SFRP4, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988423.3942232}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a19811756a78eb5a38b3f29283de35e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a19811756a78eb5a38b3f29283de35e/output.pkl Binary files differnew file mode 100644 index 0000000..eaa8405 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a19811756a78eb5a38b3f29283de35e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a27afadf161dffb997216f072c9470e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a27afadf161dffb997216f072c9470e/metadata.json new file mode 100644 index 0000000..2f03ded --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a27afadf161dffb997216f072c9470e/metadata.json @@ -0,0 +1 @@ +{"duration": 2.9495270252227783, "input_args": {"instruction": "'Context: Disease non-alcoholic fatty liver disease associates Gene PNPLA3. Variant rs2713538 associates Disease non-alcoholic fatty liver disease. Variant rs2070669 associates Disease non-alcoholic fatty liver disease. Variant rs4835021 associates Disease non-alcoholic fatty liver disease. Variant rs4604455 associates Disease non-alcoholic fatty liver disease. Variant rs2274685 associates Disease non-alcoholic fatty liver disease. Variant rs11653507 associates Disease non-alcoholic fatty liver disease. Variant rs3760230 associates Disease non-alcoholic fatty liver disease. Variant rs12359178 associates Disease non-alcoholic fatty liver disease. Variant rs696516 associates Disease non-alcoholic fatty liver disease. Variant rs9604818 associates Disease non-alcoholic fatty liver disease. Variant rs355910 associates Disease non-alcoholic fatty liver disease. Variant rs12454712 associates Disease non-alcoholic fatty liver disease. Variant rs4940694 associates Disease non-alcoholic fatty liver disease. Variant rs2896019 associates Disease non-alcoholic fatty liver disease. Variant rs4819649 associates Disease non-alcoholic fatty liver disease. Variant rs9922619 associates Disease non-alcoholic fatty liver disease. Variant rs6916318 associates Disease non-alcoholic fatty liver disease. Variant rs624698 associates Disease non-alcoholic fatty liver disease. Variant rs1260326 associates Disease non-alcoholic fatty liver disease. Variant rs1260327 associates Disease non-alcoholic fatty liver disease. Variant rs5021727 associates Disease non-alcoholic fatty liver disease. Variant rs2143571 associates Disease non-alcoholic fatty liver disease. Variant rs17321515 associates Disease non-alcoholic fatty liver disease. Variant rs9908820 associates Disease non-alcoholic fatty liver disease. Variant rs6583826 associates Disease non-alcoholic fatty liver disease. Variant rs6994124 associates Disease non-alcoholic fatty liver disease. Variant rs41290534 associates Disease non-alcoholic fatty liver disease. Variant rs9272699 associates Disease non-alcoholic fatty liver disease. Variant rs1694068 associates Disease non-alcoholic fatty liver disease. Variant rs440454 associates Disease non-alcoholic fatty liver disease. Variant rs13168878 associates Disease non-alcoholic fatty liver disease. Variant rs492602 associates Disease non-alcoholic fatty liver disease. Variant rs4135275 associates Disease non-alcoholic fatty liver disease. Variant rs28657030 associates Disease non-alcoholic fatty liver disease. Variant rs58489806 associates Disease non-alcoholic fatty liver disease. Variant rs9271325 associates Disease non-alcoholic fatty liver disease. Disease non-alcoholic fatty liver disease associates Gene PPARG. Variant rs2980854 associates Disease non-alcoholic fatty liver disease. Variant rs6802898 associates Disease non-alcoholic fatty liver disease. Variant rs151288714 associates Disease non-alcoholic fatty liver disease. Variant rs5764430 associates Disease non-alcoholic fatty liver disease. Variant rs58542926 associates Disease non-alcoholic fatty liver disease. Variant rs3747207 associates Disease non-alcoholic fatty liver disease. Variant rs1248890 associates Disease non-alcoholic fatty liver disease. Variant rs2954030 associates Disease non-alcoholic fatty liver disease. Variant rs6510374 associates Disease non-alcoholic fatty liver disease. Disease liver cirrhosis associates Gene PNPLA6. Disease liver cirrhosis associates Gene PNPLA3. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PPARG. Disease liver cirrhosis associates Gene CFAP418. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CYP7B1. Variant rs2896019 associates Disease liver cirrhosis. Variant rs58542926 associates Disease liver cirrhosis. Variant rs12484700 associates Disease liver cirrhosis. Variant rs3819290 associates Disease liver cirrhosis. Variant chr9:5073770 associates Disease liver cirrhosis. Variant rs28929474 associates Disease liver cirrhosis. Variant rs78069066 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene IL21R. Variant rs6834314 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene SLC6A14. Disease liver cirrhosis associates Gene PHKA2. Disease liver cirrhosis associates Gene POLG. Disease liver cirrhosis associates Gene LIPA. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene CP. Disease liver cirrhosis associates Gene PHKG2. Disease liver cirrhosis associates Gene PLIN1. Variant rs551625260 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ARL6. Disease liver cirrhosis associates Gene RPGRIP1L. Disease liver cirrhosis associates Gene ATP7B. Variant rs3129943 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene APOE. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene RBPJ. Disease liver cirrhosis associates Gene PIGA. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene PTRH2. Disease liver cirrhosis associates Gene POU2AF1. Disease liver cirrhosis associates Gene GPR35. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene SLC40A1. Disease liver cirrhosis associates Gene NHP2. Disease liver cirrhosis associates Gene SLC7A7. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene RPGRIP1. Disease liver cirrhosis associates Gene INPP5E. Disease liver cirrhosis associates Gene ALDOB. Variant rs738409 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC11A1. Disease liver cirrhosis associates Gene ABCB11. Variant rs2642438 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene IL12RB1. Disease liver cirrhosis associates Gene PEX1. Disease liver cirrhosis associates Gene WDR19. Disease liver cirrhosis associates Gene PARN. Disease liver cirrhosis associates Gene GPD1. Disease liver cirrhosis associates Gene TGFB1. Disease liver cirrhosis associates Gene FAH. Disease liver cirrhosis associates Gene WDPCP. Variant rs16851720 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CTNNB1. Disease liver cirrhosis associates Gene ATP8B1. Disease liver cirrhosis associates Gene TCF4. Disease liver cirrhosis associates Gene SLC51A. Disease liver cirrhosis associates Gene CSPP1. Disease liver cirrhosis associates Gene ACADVL. Variant rs738408 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SFTPC. Disease liver cirrhosis associates Gene SLC51B. Disease liver cirrhosis associates Gene TP53. Disease liver cirrhosis associates Gene TFAM. Disease liver cirrhosis associates Gene WDR35. Disease liver cirrhosis associates Gene IL12A. \\nQuestion: Out of the given list, which Gene is associated with non-alcoholic fatty liver disease and liver cirrhosis. Given list is: IL23R, RP1, PSCA, PNPLA3, PLG'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047689.626393}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a27afadf161dffb997216f072c9470e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a27afadf161dffb997216f072c9470e/output.pkl Binary files differnew file mode 100644 index 0000000..f32c41b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a27afadf161dffb997216f072c9470e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a91d73d63c4361b5d59db8eec024d5b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a91d73d63c4361b5d59db8eec024d5b/metadata.json new file mode 100644 index 0000000..6a5f9a6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a91d73d63c4361b5d59db8eec024d5b/metadata.json @@ -0,0 +1 @@ +{"duration": 1.0408225059509277, "input_args": {"instruction": "'Context: Disease large intestine cancer associates Gene CYP17A1. Disease large intestine cancer associates Gene AMPD3. Disease large intestine cancer associates Gene GPR143. Disease large intestine cancer associates Gene PPP1R21. Disease large intestine cancer associates Gene COL4A2. Disease large intestine cancer associates Gene PCNT. Disease large intestine cancer associates Gene FKBP5. Disease large intestine cancer associates Gene NAA25. Disease large intestine cancer associates Gene TRPC6. Disease large intestine cancer associates Gene GNA12. Disease large intestine cancer associates Gene HPGD. Disease large intestine cancer associates Gene TTC22. Disease large intestine cancer associates Gene PKM. Disease large intestine cancer associates Gene GNAS. Disease large intestine cancer associates Gene POLD3. Disease large intestine cancer associates Gene COLCA1. Disease large intestine cancer associates Gene NABP1. Disease large intestine cancer associates Gene SLC27A5. Disease large intestine cancer associates Gene SLC6A18. Disease large intestine cancer associates Gene PNKD. Disease large intestine cancer associates Gene ACTR1B. Disease large intestine cancer associates Gene BMP5. Disease large intestine cancer associates Gene SPSB2. Disease large intestine cancer associates Gene ETV6. Disease large intestine cancer associates Gene UTP23. Disease large intestine cancer associates Gene PREX1. Disease large intestine cancer associates Gene L1TD1. Disease large intestine cancer associates Gene LRP1. Disease large intestine cancer associates Gene SMAD3. Disease large intestine cancer associates Gene PYGL. Disease large intestine cancer associates Gene CRTC3. Disease large intestine cancer associates Gene CDH1.. Disease large intestine cancer associates Gene ADAMTS9. Disease large intestine cancer associates Gene EDN1. Variant rs1456305; rs1551510; rs1456314; rs1456306; rs7816535; rs1378897; rs17831626; rs1016342; rs6994316; rs1031588; rs6470494; rs6993569; rs7825414; rs1016343 associates Disease prostate carcinoma. Variant rs115950603 associates Disease prostate carcinoma. Variant rs11568818 associates Disease prostate carcinoma. Variant rs11599847 associates Disease prostate carcinoma. Variant rs115306967 associates Disease prostate carcinoma. Variant rs12558898 associates Disease prostate carcinoma. Variant rs11561564 associates Disease prostate carcinoma. Variant rs11650494 associates Disease prostate carcinoma. Variant rs80151891 associates Disease prostate carcinoma. Variant rs9469899 associates Disease prostate carcinoma. Variant rs4871790 associates Disease prostate carcinoma. Variant rs9381080 associates Disease prostate carcinoma. Variant rs4976790 associates Disease prostate carcinoma. Variant rs11544331 associates Disease prostate carcinoma. Variant rs9306894 associates Disease prostate carcinoma. Variant rs116154780 associates Disease prostate carcinoma. Variant rs9306895 associates Disease prostate carcinoma. Variant rs11649743 associates Disease prostate carcinoma. Variant rs4075646 associates Disease prostate carcinoma. Variant rs8089411 associates Disease prostate carcinoma. Variant rs12549761 associates Disease prostate carcinoma. Variant rs11986220 associates Disease prostate carcinoma. Variant rs11480453 associates Disease prostate carcinoma. Variant rs4871798 associates Disease prostate carcinoma. Variant rs565189650 associates Disease prostate carcinoma. Variant chr8:129642851 associates Disease prostate carcinoma. Variant rs149892036 associates Disease prostate carcinoma. Variant rs6853490 associates Disease prostate carcinoma. Variant rs11055034 associates Disease prostate carcinoma. Variant rs187809440 associates Disease prostate carcinoma. Variant rs12051443 associates Disease prostate carcinoma. Variant rs12678349 associates Disease prostate carcinoma. Variant rs11859370 associates Disease prostate carcinoma. Variant rs114780236 associates Disease prostate carcinoma. Variant rs8093601 associates Disease prostate carcinoma. Variant rs6956484 associates Disease prostate carcinoma. Variant rs11863709 associates Disease prostate carcinoma. Variant rs12956892 associates Disease prostate carcinoma. Variant rs6985504 associates Disease prostate carcinoma. Variant rs11452686 associates Disease prostate carcinoma. Variant rs59710626 associates Disease prostate carcinoma. Variant rs56391074 associates Disease prostate carcinoma. Variant chr17:46493479 associates Disease prostate carcinoma. Variant rs11686272 associates Disease prostate carcinoma. Variant rs11651052 associates Disease prostate carcinoma. Variant rs11629412 associates Disease prostate carcinoma. Variant rs12480328 associates Disease prostate carcinoma. Variant rs12653946 associates Disease prostate carcinoma. Variant rs11673591 associates Disease prostate carcinoma. Variant rs68010938 associates Disease prostate carcinoma. Variant rs111595856 associates Disease prostate carcinoma. Variant rs11672691 associates Disease prostate carcinoma. Variant rs11002805 associates Disease prostate carcinoma. Variant rs74651796 associates Disease prostate carcinoma. Variant rs12665509 associates Disease prostate carcinoma. Variant rs111599055 associates Disease prostate carcinoma. Variant rs4901313 associates Disease prostate carcinoma. Variant rs6983561 associates Disease prostate carcinoma. Variant rs139135938 associates Disease prostate carcinoma. Variant rs116532339 associates Disease prostate carcinoma. Variant rs56103503 associates Disease prostate carcinoma. Variant rs11666569 associates Disease prostate carcinoma. Variant rs116041037 associates Disease prostate carcinoma. Variant rs146618443 associates Disease prostate carcinoma. Variant rs930947 associates Disease prostate carcinoma. Variant rs4952990 associates Disease prostate carcinoma. Variant rs461251 associates Disease prostate carcinoma. Variant rs4793529 associates Disease prostate carcinoma. Variant rs4793976 associates Disease prostate carcinoma. Variant rs114810266 associates Disease prostate carcinoma. Variant rs547171081 associates Disease prostate carcinoma. Variant rs12769682 associates Disease prostate carcinoma. Variant rs62451152 associates Disease prostate carcinoma. Variant rs555607708 associates Disease prostate carcinoma. Variant rs12938538 associates Disease prostate carcinoma. \\nQuestion: Out of the given list, which Variant is associated with large intestine cancer and prostate carcinoma. Given list is: rs1107345, rs59325236, rs12203592, rs6983267, rs11675342'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048989.4533198}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a91d73d63c4361b5d59db8eec024d5b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a91d73d63c4361b5d59db8eec024d5b/output.pkl Binary files differnew file mode 100644 index 0000000..bd40b10 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0a91d73d63c4361b5d59db8eec024d5b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0aac9d76ad5909da2d71a18f006a6f4a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0aac9d76ad5909da2d71a18f006a6f4a/metadata.json new file mode 100644 index 0000000..3ee7797 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0aac9d76ad5909da2d71a18f006a6f4a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4828214645385742, "input_args": {"instruction": "\"Context: Disease Sjogren's syndrome associates Gene STAT4. Disease Sjogren's syndrome associates Gene HLA-DQA1. Disease Sjogren's syndrome associates Gene TSBP1. Disease Sjogren's syndrome associates Gene HLA-DRA. Disease Sjogren's syndrome associates Gene BLK. Disease Sjogren's syndrome associates Gene TNFAIP3. Disease Sjogren's syndrome associates Gene GTF2I. Disease Sjogren's syndrome associates Gene IRF5. Disease Sjogren's syndrome associates Gene TTR. Disease Sjogren's syndrome associates Gene TNPO3. Disease Sjogren's syndrome associates Gene TNIP1. Gene MIR335 associates Disease Sjogren's syndrome. Gene MIR146B associates Disease Sjogren's syndrome. Gene MIR155 associates Disease Sjogren's syndrome. Gene MIR152 associates Disease Sjogren's syndrome. Gene MIR126 associates Disease Sjogren's syndrome. Gene MIR342 associates Disease Sjogren's syndrome. Gene MIR148A associates Disease Sjogren's syndrome. Gene MIR326 associates Disease Sjogren's syndrome. Gene MIR150 associates Disease Sjogren's syndrome. Gene MIR146A associates Disease Sjogren's syndrome. Variant rs9275390 associates Disease systemic scleroderma. Variant rs4681851 associates Disease systemic scleroderma. Variant rs11642873 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene HLA-DRA. Variant rs9296015 associates Disease systemic scleroderma. Variant rs76285340 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene STAT4. Variant rs62478615 associates Disease systemic scleroderma. Variant rs8109496 associates Disease systemic scleroderma. Variant rs9884090 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene PTPN22. Variant rs12531711 associates Disease systemic scleroderma. Variant rs2305743 associates Disease systemic scleroderma. Variant rs12534421 associates Disease systemic scleroderma. Variant rs2233287 associates Disease systemic scleroderma. Variant rs11893432 associates Disease systemic scleroderma. Variant rs4554699 associates Disease systemic scleroderma. Variant rs45471499 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene BLK. Variant rs3129763 associates Disease systemic scleroderma. Variant rs443198 associates Disease systemic scleroderma. Variant rs589446 associates Disease systemic scleroderma. Variant rs10488631 associates Disease systemic scleroderma. Variant rs4731532 associates Disease systemic scleroderma. Variant rs6457617 associates Disease systemic scleroderma. Variant rs3821236 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene IL12RB2. Variant rs4134466 associates Disease systemic scleroderma. Variant rs685985 associates Disease systemic scleroderma. Variant rs1422673 associates Disease systemic scleroderma. Variant HLA-DRB1*11:04 associates Disease systemic scleroderma. Variant rs3792783 associates Disease systemic scleroderma. Variant rs1005714 associates Disease systemic scleroderma. Variant rs36073657 associates Disease systemic scleroderma. Variant rs3790566 associates Disease systemic scleroderma. Variant rs17340351 associates Disease systemic scleroderma. Variant rs230534 associates Disease systemic scleroderma. Variant rs3129882 associates Disease systemic scleroderma. Variant rs35677470 associates Disease systemic scleroderma. Variant rs4076852 associates Disease systemic scleroderma. Variant rs633724 associates Disease systemic scleroderma. Variant rs2056626 associates Disease systemic scleroderma. Variant rs3894194 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene IL12RB1. Variant rs2736346 associates Disease systemic scleroderma. \\nQuestion: Out of the given list, which Gene is associated with Sjogren's syndrome and systemic scleroderma. Given list is: BTN3A1, HLA-DQB1, JAK2, TGM2, STAT4\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048705.9369845}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0aac9d76ad5909da2d71a18f006a6f4a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0aac9d76ad5909da2d71a18f006a6f4a/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0aac9d76ad5909da2d71a18f006a6f4a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b3a0735faa16256f35afdeb83b0df09/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b3a0735faa16256f35afdeb83b0df09/metadata.json new file mode 100644 index 0000000..517f6ed --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b3a0735faa16256f35afdeb83b0df09/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8979392051696777, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ankylosing spondylitis and Crohn's disease. Given list is: IL23R, HLA-DQB1, TNRC18, EYA2, SLC2A9\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989888.7841449}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b3a0735faa16256f35afdeb83b0df09/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b3a0735faa16256f35afdeb83b0df09/output.pkl Binary files differnew file mode 100644 index 0000000..6db4bc4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b3a0735faa16256f35afdeb83b0df09/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b6b52660a0f59a59a23e2f1026e175d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b6b52660a0f59a59a23e2f1026e175d/metadata.json new file mode 100644 index 0000000..729c4f7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b6b52660a0f59a59a23e2f1026e175d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6292121410369873, "input_args": {"instruction": "'Context: Variant HLA-DQB1*602 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-DQA2. Disease cervix carcinoma associates Gene HLA-G. Disease cervix carcinoma associates Gene HLA-DQA1. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene TUBB. Gene MIR4262 associates Disease cervix carcinoma. Variant HAL-DRB1*13 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Gene MIR590 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. Variant rs143029752 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ADGRV1. Variant rs57746686 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Gene MIR106B associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene LTA. Variant rs116149201 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Gene MIR424 associates Disease cervix carcinoma. Variant rs3130218 associates Disease cervix carcinoma. Gene MIR429 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Gene MIR15B associates Disease cervix carcinoma. Variant rs9272143 associates Disease cervix carcinoma. Gene MIR421 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs3131631 associates Disease cervix carcinoma. Variant rs115137622 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Gene MIR146A associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs114115115 associates Disease cervix carcinoma. Disease opiate dependence associates Gene CYP2B6. Disease opiate dependence associates Gene COMT. Disease opiate dependence associates Gene PDYN. Disease opiate dependence associates Gene DRD2. Disease opiate dependence associates Gene ADGRV1. Disease opiate dependence associates Gene BDNF. Disease opiate dependence associates Gene DRD4. Variant rs10799590 associates Disease opiate dependence. Variant rs2460187 associates Disease opiate dependence. Variant rs2460186 associates Disease opiate dependence. Variant rs12442183 associates Disease opiate dependence. Variant rs1970606 associates Disease opiate dependence. Disease opiate dependence associates Gene FKBP5. Disease opiate dependence associates Gene DRD3. Disease opiate dependence associates Gene HTR1B. Disease opiate dependence associates Gene OPRK1. Disease opiate dependence associates Gene CSNK1E. Variant rs2222243 associates Disease opiate dependence. Disease opiate dependence associates Gene OPRD1. Variant rs2030272 associates Disease opiate dependence. Variant rs201123820 associates Disease opiate dependence. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and opiate dependence. Given list is: HYKK, HOXD3, HLA-DQA1, ADGRV1, BRCA2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048187.9275925}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b6b52660a0f59a59a23e2f1026e175d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b6b52660a0f59a59a23e2f1026e175d/output.pkl Binary files differnew file mode 100644 index 0000000..62f6e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0b6b52660a0f59a59a23e2f1026e175d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0bb012f52c55080f9b1e4bf513cdacca/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0bb012f52c55080f9b1e4bf513cdacca/metadata.json new file mode 100644 index 0000000..5f96efd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0bb012f52c55080f9b1e4bf513cdacca/metadata.json @@ -0,0 +1 @@ +{"duration": 21.414700508117676, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with hypothyroidism and thyroid gland papillary carcinoma. Given list is: PRKACB, FAM13A, VAV3, ZFPM2, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989701.8890457}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0bb012f52c55080f9b1e4bf513cdacca/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0bb012f52c55080f9b1e4bf513cdacca/output.pkl Binary files differnew file mode 100644 index 0000000..34e41ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0bb012f52c55080f9b1e4bf513cdacca/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c29ceaee7dcb31daa4ca3cd031c5d7c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c29ceaee7dcb31daa4ca3cd031c5d7c/metadata.json new file mode 100644 index 0000000..649a3ae --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c29ceaee7dcb31daa4ca3cd031c5d7c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5288412570953369, "input_args": {"instruction": "'Context: Disease sclerosing cholangitis associates Gene ATXN2. Disease sclerosing cholangitis associates Gene UBASH3A. Variant rs6058869 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene PRKD2. Variant rs4851529 associates Disease sclerosing cholangitis. Variant rs4986790 associates Disease sclerosing cholangitis. Variant rs9687958 associates Disease sclerosing cholangitis. Variant rs11649613 associates Disease sclerosing cholangitis. Variant rs4243971 associates Disease sclerosing cholangitis. Variant rs114202211 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene FOXP1. Variant rs3197999 associates Disease sclerosing cholangitis. Variant rs145832854 associates Disease sclerosing cholangitis. Variant rs2145623 associates Disease sclerosing cholangitis. Variant rs4672505 associates Disease sclerosing cholangitis. Variant rs4655215 associates Disease sclerosing cholangitis. Variant rs4946717 associates Disease sclerosing cholangitis. Variant rs4845604 associates Disease sclerosing cholangitis. Variant rs3184504 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene HDAC7. Variant rs4921482 associates Disease sclerosing cholangitis. Variant rs11749040 associates Disease sclerosing cholangitis. Variant rs6062496 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene TCF4. Disease sclerosing cholangitis associates Gene GPR35. Variant rs61839660 associates Disease sclerosing cholangitis. Variant rs4703855 associates Disease sclerosing cholangitis. Variant rs11749391 associates Disease sclerosing cholangitis. Variant rs4971079 associates Disease sclerosing cholangitis. Variant rs61861422 associates Disease sclerosing cholangitis. Variant rs80060485 associates Disease sclerosing cholangitis. Variant rs6556411 associates Disease sclerosing cholangitis. Variant rs4676410 associates Disease sclerosing cholangitis. Variant rs11306716 associates Disease sclerosing cholangitis. Variant rs60652743 associates Disease sclerosing cholangitis. Variant rs35667974 associates Disease sclerosing cholangitis. Variant rs3853824 associates Disease sclerosing cholangitis. Variant rs28998802 associates Disease sclerosing cholangitis. Variant rs35320439 associates Disease sclerosing cholangitis. Variant rs28550029 associates Disease sclerosing cholangitis. Variant rs9554587 associates Disease sclerosing cholangitis. Variant rs3747517 associates Disease sclerosing cholangitis. Variant rs11574938 associates Disease sclerosing cholangitis. Variant rs6651252 associates Disease sclerosing cholangitis. Variant rs6781808 associates Disease sclerosing cholangitis. Variant rs11750385 associates Disease sclerosing cholangitis. Variant rs11098964 associates Disease sclerosing cholangitis. Variant rs2266961 associates Disease sclerosing cholangitis. Variant rs12932970 associates Disease sclerosing cholangitis. Variant rs35874463 associates Disease sclerosing cholangitis. Variant rs9491891 associates Disease sclerosing cholangitis. Variant rs74956615 associates Disease sclerosing cholangitis. Variant rs61802846 associates Disease sclerosing cholangitis. Variant rs11675538 associates Disease sclerosing cholangitis. Variant rs28701841 associates Disease sclerosing cholangitis. Variant rs67025039 associates Disease sclerosing cholangitis. Variant rs9977672 associates Disease sclerosing cholangitis. Variant rs12943464 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene INPP5A. Disease sclerosing cholangitis associates Gene SIK2. Variant rs56167332 associates Disease sclerosing cholangitis. Variant rs66504140 associates Disease sclerosing cholangitis. Variant rs12942547 associates Disease sclerosing cholangitis. Variant rs6863411 associates Disease sclerosing cholangitis. Variant rs4143332 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene CCDC88B. Variant rs34920465 associates Disease sclerosing cholangitis. Variant rs59867199 associates Disease sclerosing cholangitis. Variant rs12694846 associates Disease sclerosing cholangitis. Variant rs853974 associates Disease sclerosing cholangitis. Variant rs469758 associates Disease sclerosing cholangitis. Variant rs13407913 associates Disease sclerosing cholangitis. Variant rs12987977 associates Disease sclerosing cholangitis. Variant rs925255 associates Disease sclerosing cholangitis. Variant rs2284553 associates Disease sclerosing cholangitis. Disease endometrial cancer associates Gene SLC6A17. Gene SLC6A9 marker Disease endometrial cancer. Gene SLC6A12 marker Disease endometrial cancer. Gene SLC6A6 marker Disease endometrial cancer. Gene ATXN7L2 marker Disease endometrial cancer. Variant rs1057520029 associates Disease endometrial cancer. Gene PLA2G4A marker Disease endometrial cancer. Variant rs1057520028 associates Disease endometrial cancer. Variant rs1057520027 associates Disease endometrial cancer. Gene SLC26A11 marker Disease endometrial cancer. Gene RAB7B marker Disease endometrial cancer. Gene MIR9-3 associates Disease endometrial cancer. Gene ACAD9 marker Disease endometrial cancer. Gene MIR9-1 associates Disease endometrial cancer. Gene PLA2G4F marker Disease endometrial cancer. Gene MIR9-2 associates Disease endometrial cancer. Variant rs1057519901 associates Disease endometrial cancer. Variant rs1057519854 associates Disease endometrial cancer. Gene SLC26A2 marker Disease endometrial cancer. Variant rs387906678 associates Disease endometrial cancer. Gene TPH1 expressedin Disease endometrial cancer. Disease endometrial cancer associates Gene SEC23B. Gene SLC9A7 marker Disease endometrial cancer. Gene KRT27 expressedin Disease endometrial cancer. Gene SLC38A9 marker Disease endometrial cancer. Gene SLC12A2 marker Disease endometrial cancer. Disease endometrial cancer associates Gene KLLN. Variant rs1431264077 associates Disease endometrial cancer. Gene COL26A1 expressedin Disease endometrial cancer. Gene LPCAT2 marker Disease endometrial cancer. Gene DHRS7B marker Disease endometrial cancer. Gene SLC38A7 marker Disease endometrial cancer. Gene PLCB4 marker Disease endometrial cancer. Gene RAB6B marker Disease endometrial cancer. Gene MIR27B associates Disease endometrial cancer. Gene C6orf52 marker Disease endometrial cancer. Gene SLC25A19 marker Disease endometrial cancer. Gene PLSCR4 marker Disease endometrial cancer. Gene CCL4 marker Disease endometrial cancer. Gene COL9A1 expressedin Disease endometrial cancer. Gene C6orf118 expressedin Disease endometrial cancer. Gene SLC22A23 marker Disease endometrial cancer. Gene C9orf152 marker Disease endometrial cancer. Gene CLDN6 marker Disease endometrial cancer. Gene ADRA1B marker Disease endometrial cancer. Gene SLC29A2 marker Disease endometrial cancer. Gene PLA2G2D marker Disease endometrial cancer. Gene CTNNA2 expressedin Disease endometrial cancer. Gene SLC47A1 marker Disease endometrial cancer. Gene CFAP251 marker Disease endometrial cancer. Gene SLC25A43 marker Disease endometrial cancer. Gene MIR29C associates Disease endometrial cancer. Gene PCSK1N marker Disease endometrial cancer. Gene C11orf98 marker Disease endometrial cancer. Gene CFAP77 marker Disease endometrial cancer. Gene RABL6 marker Disease endometrial cancer. Gene C9orf24 expressedin Disease endometrial cancer. Gene SERPINA11 marker Disease endometrial cancer. Gene SLC25A23 marker Disease endometrial cancer. Gene RAB6A marker Disease endometrial cancer. Gene CLDN16 marker Disease endometrial cancer. Gene C11orf97 expressedin Disease endometrial cancer. Gene SLC25A12 marker Disease endometrial cancer. Gene SLC38A1 marker Disease endometrial cancer. Gene CRYBA4 expressedin Disease endometrial cancer. Gene ACAA1 marker Disease endometrial cancer. Gene SCGB3A1 expressedin Disease endometrial cancer. Gene CFAP77 expressedin Disease endometrial cancer. Gene SLC10A4 expressedin Disease endometrial cancer. Gene C9orf24 marker Disease endometrial cancer. Gene CCDC88A marker Disease endometrial cancer. Variant rs36053993 associates Disease endometrial cancer. Gene SLC4A1AP marker Disease endometrial cancer. Gene SLC5A1 marker Disease endometrial cancer. Gene SCGB2A1 expressedin Disease endometrial cancer. \\nQuestion: Out of the given list, which Gene is associated with sclerosing cholangitis and endometrial cancer. Given list is: FADS2, RP1, ATXN2, VRK2, PLA2G6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047787.3324172}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c29ceaee7dcb31daa4ca3cd031c5d7c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c29ceaee7dcb31daa4ca3cd031c5d7c/output.pkl Binary files differnew file mode 100644 index 0000000..8e29b14 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c29ceaee7dcb31daa4ca3cd031c5d7c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c5166312c61a8710775a8ec1388851a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c5166312c61a8710775a8ec1388851a/metadata.json new file mode 100644 index 0000000..bbeb980 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c5166312c61a8710775a8ec1388851a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6087601184844971, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and interstitial lung disease. Given list is: ATXN2, TERT, FAM227B, ALDH1A2, KALRN'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048758.0764356}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c5166312c61a8710775a8ec1388851a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c5166312c61a8710775a8ec1388851a/output.pkl Binary files differnew file mode 100644 index 0000000..d3941cc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c5166312c61a8710775a8ec1388851a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c7550c28b1c029cfa2575ceb23df1e2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c7550c28b1c029cfa2575ceb23df1e2/metadata.json new file mode 100644 index 0000000..2fd84f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c7550c28b1c029cfa2575ceb23df1e2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5188610553741455, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with triple-receptor negative breast cancer and uterine fibroid. Given list is: rs4459895, rs8176719, rs115879499, rs78378222, rs2143571'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048867.0091593}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c7550c28b1c029cfa2575ceb23df1e2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c7550c28b1c029cfa2575ceb23df1e2/output.pkl Binary files differnew file mode 100644 index 0000000..bca4d38 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0c7550c28b1c029cfa2575ceb23df1e2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ce18fa11adaac983ca8078730415bd2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ce18fa11adaac983ca8078730415bd2/metadata.json new file mode 100644 index 0000000..499ad2d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ce18fa11adaac983ca8078730415bd2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6648683547973633, "input_args": {"instruction": "'Context: Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene GATA3. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Disease immunoglobulin alpha deficiency associates Gene CSNK2A1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Disease immunoglobulin alpha deficiency associates Gene ATM. Disease immunoglobulin alpha deficiency associates Gene IL6ST. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Disease immunoglobulin alpha deficiency associates Gene PTPRC. Disease immunoglobulin alpha deficiency associates Gene TCN2. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene NFE2L2. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene CASP8. Disease immunoglobulin alpha deficiency isa Disease B cell deficiency. Disease immunoglobulin alpha deficiency associates Gene DNMT3B. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene JAK3. Disease immunoglobulin alpha deficiency associates Gene ZNF341. Disease cervix carcinoma associates Gene HLA-DQA1. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-DQA2. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-G. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Variant HAL-DRB1*13 associates Disease cervix carcinoma. Variant rs10175462 associates Disease cervix carcinoma. Variant rs28752857 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. Variant rs4282438 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs9272050 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Variant rs9272143 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene PAX8. Gene MIR518D associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene TUBB. Variant rs142979264 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs8067378 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Variant rs117670375 associates Disease cervix carcinoma. Variant rs3130218 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene LTA. Gene MIR182 associates Disease cervix carcinoma. Gene MIR16-2 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Gene MIR26B associates Disease cervix carcinoma. Variant rs116149201 associates Disease cervix carcinoma. Gene MIR218-1 associates Disease cervix carcinoma. Gene MIR485 associates Disease cervix carcinoma. Variant rs7457728 associates Disease cervix carcinoma. \\nQuestion: Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and cervix carcinoma. Given list is: CLPTM1L, STAT3, HLA-DQA1, ABO, HLA-DPB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989824.4105513}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ce18fa11adaac983ca8078730415bd2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ce18fa11adaac983ca8078730415bd2/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ce18fa11adaac983ca8078730415bd2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0cecc49e21d72589be62ea416e2a0f97/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0cecc49e21d72589be62ea416e2a0f97/metadata.json new file mode 100644 index 0000000..335c4ab --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0cecc49e21d72589be62ea416e2a0f97/metadata.json @@ -0,0 +1 @@ +{"duration": 0.620964765548706, "input_args": {"instruction": "'Context: Variant rs895139219 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs144943614 associates Disease lung carcinoma. Disease lung carcinoma associates Gene WNK1. Variant rs142618987 associates Disease lung carcinoma. Disease lung carcinoma associates Gene BTN3A1. Variant rs144433536 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs13201681 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs4398410 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs16832404 x rs2562796 associates Disease lung carcinoma. Disease lung carcinoma associates Gene SEMA6D. Variant rs115729734 associates Disease lung carcinoma. Variant rs13217620 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs3999544 associates Disease lung carcinoma. Variant rs13212562 associates Disease lung carcinoma. Variant rs147560086 associates Disease lung carcinoma. Gene MIR328 associates Disease lung carcinoma. Variant rs147149347 associates Disease lung carcinoma. Variant rs139244745 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CHEK2. Variant rs115100928 associates Disease lung carcinoma. Variant rs75932146 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs35952432 associates Disease lung carcinoma. Gene MIR133B associates Disease lung carcinoma. Variant rs36600 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs147680653 associates Disease lung carcinoma. Variant rs148934350 associates Disease lung carcinoma. Gene MIR495 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CHRNB4. Variant rs121909071 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Variant rs34244947 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Disease lung carcinoma associates Gene ADAMTS7. Variant rs116822326 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs41266839 associates Disease lung carcinoma. Variant rs4946256 associates Disease lung carcinoma. Variant rs501942 associates Disease lung carcinoma. Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TERT. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene GNAS. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene PTPN11. Variant rs6010620 associates Disease central nervous system cancer. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PALB2. Variant rs4977756 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene IFNG. Variant rs1920116 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene RAF1. Disease central nervous system cancer associates Gene TSC2. Disease central nervous system cancer associates Gene POLD1. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene MMP23B. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene PDGFB. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene TUBB. Variant rs2157719 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene CDKN1B. Variant rs12230172 associates Disease central nervous system cancer. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene TCTN3. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EGFR. Variant rs891835 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FGF8. Disease central nervous system cancer associates Gene GRN. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene CHEK2. Disease central nervous system cancer associates Gene GPC4. Disease central nervous system cancer associates Gene NRAS. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene GPC3. Disease central nervous system cancer associates Gene CCBE1. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene CDKN2C. Disease central nervous system cancer associates Gene SETBP1. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CREBBP. Variant rs1412829 associates Disease central nervous system cancer. Variant rs75061358 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene GLI3. Disease central nervous system cancer associates Gene RTEL1. Disease central nervous system cancer associates Gene NSD1. Disease central nervous system cancer associates Gene CDKN2B. Disease central nervous system cancer associates Gene RET. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TRAF7. Disease central nervous system cancer associates Gene ZIC2. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and central nervous system cancer. Given list is: C9, GNE, CDKAL1, TERT, PTPN22'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048804.8997447}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0cecc49e21d72589be62ea416e2a0f97/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0cecc49e21d72589be62ea416e2a0f97/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0cecc49e21d72589be62ea416e2a0f97/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0d83ad4add0e83448ad821cec0eef31f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0d83ad4add0e83448ad821cec0eef31f/metadata.json new file mode 100644 index 0000000..6c5ff68 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0d83ad4add0e83448ad821cec0eef31f/metadata.json @@ -0,0 +1 @@ +{"duration": 6.007204532623291, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with collagenous colitis and immunoglobulin alpha deficiency. Given list is: EPAS1, MYH7, RELN, HLA-DQA1, KIT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989939.7097352}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0d83ad4add0e83448ad821cec0eef31f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0d83ad4add0e83448ad821cec0eef31f/output.pkl Binary files differnew file mode 100644 index 0000000..f4b254e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0d83ad4add0e83448ad821cec0eef31f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ebad4499a71516266763aba159660c7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ebad4499a71516266763aba159660c7/metadata.json new file mode 100644 index 0000000..eef3dee --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ebad4499a71516266763aba159660c7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.41143012046813965, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and triple-receptor negative breast cancer. Given list is: TERT, FER, TERT, PCDH15, PTK2B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988535.8037179}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ebad4499a71516266763aba159660c7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ebad4499a71516266763aba159660c7/output.pkl Binary files differnew file mode 100644 index 0000000..c4ca095 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ebad4499a71516266763aba159660c7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ecd985c6fe2f5da751a6b10d350f9dd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ecd985c6fe2f5da751a6b10d350f9dd/metadata.json new file mode 100644 index 0000000..aaa69db --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ecd985c6fe2f5da751a6b10d350f9dd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48032450675964355, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with membranous glomerulonephritis and immunoglobulin alpha deficiency. Given list is: HLA-DQA1, ADH1B, TM6SF2, TERT, IL2RA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988425.1123693}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ecd985c6fe2f5da751a6b10d350f9dd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ecd985c6fe2f5da751a6b10d350f9dd/output.pkl Binary files differnew file mode 100644 index 0000000..6ce59e4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ecd985c6fe2f5da751a6b10d350f9dd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ee23b12b74d68ac6f6ecb62fe0c478f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ee23b12b74d68ac6f6ecb62fe0c478f/metadata.json new file mode 100644 index 0000000..591ba0c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ee23b12b74d68ac6f6ecb62fe0c478f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.3928651809692383, "input_args": {"instruction": "'Context: Disease oral cavity cancer associates Gene HLA-DQB1. Disease oral cavity cancer associates Gene ADH1B. Variant rs6547741 associates Disease oral cavity cancer. Variant rs10462706 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. Disease oral cavity cancer associates Gene GPN1.. Variant rs121909224 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Disease autoimmune hepatitis associates Gene TSBP1. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with oral cavity cancer and autoimmune hepatitis. Given list is: KAT2B, TTLL5, HLA-DQB1, HOXD3, SAMM50'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989764.2335496}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ee23b12b74d68ac6f6ecb62fe0c478f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ee23b12b74d68ac6f6ecb62fe0c478f/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ee23b12b74d68ac6f6ecb62fe0c478f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef6655be0e42fc23ca603699241d549/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef6655be0e42fc23ca603699241d549/metadata.json new file mode 100644 index 0000000..4a2e70b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef6655be0e42fc23ca603699241d549/metadata.json @@ -0,0 +1 @@ +{"duration": 1.3960239887237549, "input_args": {"instruction": "'Context: Disease autosomal recessive nonsyndromic deafness 21 isa Disease autosomal recessive nonsyndromic deafness. Disease UV-sensitive syndrome isa Disease autosomal recessive disease. Disease UV-sensitive syndrome isa Disease skin disease. \\nQuestion: Out of the given list, which Variant is associated with age-related hearing impairment and skin sensitivity to sun. Given list is: rs1126809, rs416223, rs12722502, rs9419958, rs1333049'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049162.0564613}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef6655be0e42fc23ca603699241d549/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef6655be0e42fc23ca603699241d549/output.pkl Binary files differnew file mode 100644 index 0000000..d043c68 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef6655be0e42fc23ca603699241d549/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef9840a14a66f45777286ff1765eb74/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef9840a14a66f45777286ff1765eb74/metadata.json new file mode 100644 index 0000000..a765178 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef9840a14a66f45777286ff1765eb74/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6457335948944092, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with uveal melanoma and liver cirrhosis. Given list is: PRX, CACNA2D1, GTF2I, ADGRV1, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048812.1109195}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef9840a14a66f45777286ff1765eb74/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef9840a14a66f45777286ff1765eb74/output.pkl Binary files differnew file mode 100644 index 0000000..9cc0eca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0ef9840a14a66f45777286ff1765eb74/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f5dc54c8ca2286174eeb50241f871e9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f5dc54c8ca2286174eeb50241f871e9/metadata.json new file mode 100644 index 0000000..7654999 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f5dc54c8ca2286174eeb50241f871e9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6301004886627197, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with anterior uveitis and ankylosing spondylitis. Given list is: SYT14, TNFSF15, UGT1A8, HBB, ERAP1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048124.5819633}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f5dc54c8ca2286174eeb50241f871e9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f5dc54c8ca2286174eeb50241f871e9/output.pkl Binary files differnew file mode 100644 index 0000000..16f7706 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f5dc54c8ca2286174eeb50241f871e9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f8ceb01ffc8b19174b721380934632e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f8ceb01ffc8b19174b721380934632e/metadata.json new file mode 100644 index 0000000..972a308 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f8ceb01ffc8b19174b721380934632e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5524475574493408, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ulcerative colitis and ankylosing spondylitis. Given list is: ALDH1A2, IL23R, DTNB, SNTB1, MYH7'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990125.7315543}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f8ceb01ffc8b19174b721380934632e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f8ceb01ffc8b19174b721380934632e/output.pkl Binary files differnew file mode 100644 index 0000000..06bedc5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0f8ceb01ffc8b19174b721380934632e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0fe51cdcae6b39a277de881bfb0d61fd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0fe51cdcae6b39a277de881bfb0d61fd/metadata.json new file mode 100644 index 0000000..1d85b1e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0fe51cdcae6b39a277de881bfb0d61fd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5003564357757568, "input_args": {"instruction": "'Context: Variant rs11693806 associates Disease differentiated thyroid gland carcinoma. Variant rs6996585 associates Disease differentiated thyroid gland carcinoma. Variant rs12990503 associates Disease differentiated thyroid gland carcinoma. Disease hypothyroidism associates Gene HLA-DPB1. Disease hypothyroidism associates Gene HLA-DQB1. Disease hypothyroidism associates Gene HLA-DRB1. Disease hypothyroidism associates Gene VAV3. Disease hypothyroidism associates Gene HLA-DPA1. Disease hypothyroidism associates Gene RASGRP1. Disease hypothyroidism associates Gene FOXP1. Disease hypothyroidism associates Gene PIEZO1. Disease hypothyroidism associates Gene NKX2-5. Variant chr14:81143695 associates Disease hypothyroidism. Disease hypothyroidism associates Gene ITGB3. Disease hypothyroidism associates Gene PIK3CA. Disease hypothyroidism associates Gene NKX2-1. Disease hypothyroidism associates Gene NFATC1. Variant rs1266904735 associates Disease hypothyroidism. Disease hypothyroidism associates Gene ACAP1. Disease hypothyroidism associates Gene CYP27A1. Variant rs12582330 associates Disease hypothyroidism. Variant rs151289341 associates Disease hypothyroidism. Variant rs61759532 associates Disease hypothyroidism. Disease hypothyroidism associates Gene GTF2I. Disease hypothyroidism associates Gene GATA1. Variant rs1951459 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TPO. Disease hypothyroidism associates Gene STX1A. Disease hypothyroidism associates Gene FDX2. Variant rs9562955 associates Disease hypothyroidism. Disease hypothyroidism associates Gene CD55. Disease hypothyroidism associates Gene PPP1R15B. Disease hypothyroidism associates Gene IFNG. Variant rs57145876 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TG. Disease hypothyroidism associates Gene RAB5C. Disease hypothyroidism associates Gene IRS4. Disease hypothyroidism associates Gene FGF13. Disease hypothyroidism associates Gene TSHR. Disease hypothyroidism associates Gene SLC25A36. Disease hypothyroidism associates Gene SAA1. Disease hypothyroidism associates Gene CDKN1C. Disease hypothyroidism associates Gene RAB5B. Disease hypothyroidism associates Gene TSHB. Variant rs6914622 associates Disease hypothyroidism. Variant rs6908626 associates Disease hypothyroidism. Disease hypothyroidism associates Gene DNAJC19. Disease hypothyroidism associates Gene PHF21A. Disease hypothyroidism associates Gene TNFRSF14. Disease hypothyroidism associates Gene OPA1. Disease hypothyroidism associates Gene GTF2IRD1. Variant rs11666808 associates Disease hypothyroidism. Variant rs143210911 associates Disease hypothyroidism. Disease hypothyroidism associates Gene C1QTNF6. Disease hypothyroidism associates Gene DACT1. Variant rs56818621 associates Disease hypothyroidism. Disease hypothyroidism associates Gene MMP23B. Disease hypothyroidism associates Gene TGIF1. Disease hypothyroidism associates Gene ZFP57. Variant rs13355543 associates Disease hypothyroidism. Variant rs12756886 associates Disease hypothyroidism. Disease hypothyroidism associates Gene ENPP1. Disease hypothyroidism associates Gene RAD51B. Variant rs78495697 associates Disease hypothyroidism. Disease hypothyroidism associates Gene INPP5B. Variant rs755121215 associates Disease hypothyroidism. Disease hypothyroidism associates Gene FOXA2. Disease hypothyroidism associates Gene C1QBP. Disease hypothyroidism associates Gene APOE. Disease hypothyroidism associates Gene GTF2IRD2. Variant rs1561924 associates Disease hypothyroidism. Variant rs61101437 associates Disease hypothyroidism. Variant rs370475698 associates Disease hypothyroidism. Variant rs6992869 associates Disease hypothyroidism. Disease hypothyroidism associates Gene XRCC4. Variant rs55817508 associates Disease hypothyroidism. Variant rs6505765 associates Disease hypothyroidism. Variant rs11406335 associates Disease hypothyroidism. \\nQuestion: Out of the given list, which Gene is associated with differentiated thyroid gland carcinoma and hypothyroidism. Given list is: ERAP1, HLA-DQA1, VAV3, PINX1, PCDH15'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989880.6402476}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0fe51cdcae6b39a277de881bfb0d61fd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0fe51cdcae6b39a277de881bfb0d61fd/output.pkl Binary files differnew file mode 100644 index 0000000..cb70369 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/0fe51cdcae6b39a277de881bfb0d61fd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/105160809584232575b6893cb08c2b2f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/105160809584232575b6893cb08c2b2f/metadata.json new file mode 100644 index 0000000..9024253 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/105160809584232575b6893cb08c2b2f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48761820793151855, "input_args": {"instruction": "\"Context: Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene HLA-DOB. Disease Takayasu's arteritis associates Gene HLA-DQB2. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PTK2B. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene ABHD16A. Variant HLAB*5201 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene GPANK1. Variant HLAB*1501 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene BAG6. Variant HLAB*1302 associates Disease Takayasu's arteritis. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PSORS1C1. Disease Takayasu's arteritis associates Gene TRIM40. Disease Takayasu's arteritis associates Gene VWA7. Variant rs9266745 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Variant rs4379175 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VPS8. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs28834970 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs12526858 associates Disease Takayasu's arteritis. Variant rs76457959 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene RNF5. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma localizes Anatomy blood vessel. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. \\nQuestion: Out of the given list, which Gene is associated with Takayasu's arteritis and diffuse large B-cell lymphoma. Given list is: HLA-B, PLG, BRCA2, PNPLA3, PBX2\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989761.6283896}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/105160809584232575b6893cb08c2b2f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/105160809584232575b6893cb08c2b2f/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/105160809584232575b6893cb08c2b2f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1069afe02896b81dfc7ce74ac89a7d0b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1069afe02896b81dfc7ce74ac89a7d0b/metadata.json new file mode 100644 index 0000000..8c397ad --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1069afe02896b81dfc7ce74ac89a7d0b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5677535533905029, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myelodysplastic syndrome and herpes zoster. Given list is: DTNB, HLA-B, ATP2B1, SLC14A2, KALRN'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989828.6817758}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1069afe02896b81dfc7ce74ac89a7d0b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1069afe02896b81dfc7ce74ac89a7d0b/output.pkl Binary files differnew file mode 100644 index 0000000..ce440e3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1069afe02896b81dfc7ce74ac89a7d0b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/106ed827d7f0e1f51f9763580e612e69/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/106ed827d7f0e1f51f9763580e612e69/metadata.json new file mode 100644 index 0000000..e81c85f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/106ed827d7f0e1f51f9763580e612e69/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5960779190063477, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with thoracic aortic aneurysm and abdominal aortic aneurysm. Given list is: rs1642764, rs595244, rs139606545, rs12077210, rs12917707'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050475.7765484}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/106ed827d7f0e1f51f9763580e612e69/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/106ed827d7f0e1f51f9763580e612e69/output.pkl Binary files differnew file mode 100644 index 0000000..9444672 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/106ed827d7f0e1f51f9763580e612e69/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10b4551745ac968c1294dae4e3297656/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10b4551745ac968c1294dae4e3297656/metadata.json new file mode 100644 index 0000000..b0b29a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10b4551745ac968c1294dae4e3297656/metadata.json @@ -0,0 +1 @@ +{"duration": 0.56585693359375, "input_args": {"instruction": "'Context: Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Gene MIR122 associates Disease autoimmune hepatitis. Disease ontology identifier of autoimmune hepatitis is DOID:2048. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease collagenous colitis resembles Disease toxic megacolon. \\nQuestion: Out of the given list, which Variant is associated with autoimmune hepatitis and collagenous colitis. Given list is: rs17398575, rs1975197, rs2187668, rs6444305, rs2230199'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048873.8543944}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10b4551745ac968c1294dae4e3297656/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10b4551745ac968c1294dae4e3297656/output.pkl Binary files differnew file mode 100644 index 0000000..1bf1c25 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10b4551745ac968c1294dae4e3297656/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10d569d2421e7f7dba9c1c105bdbf15e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10d569d2421e7f7dba9c1c105bdbf15e/metadata.json new file mode 100644 index 0000000..c08f7ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10d569d2421e7f7dba9c1c105bdbf15e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.60205078125, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oropharynx cancer and rheumatic heart disease. Given list is: DENND1A, HLA-DQB1, VRK2, TERT, CACNA1A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047770.4458907}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10d569d2421e7f7dba9c1c105bdbf15e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10d569d2421e7f7dba9c1c105bdbf15e/output.pkl Binary files differnew file mode 100644 index 0000000..8cd3a74 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10d569d2421e7f7dba9c1c105bdbf15e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10de30939c6c906274602c92f8cee646/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10de30939c6c906274602c92f8cee646/metadata.json new file mode 100644 index 0000000..62a7bd2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10de30939c6c906274602c92f8cee646/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5308640003204346, "input_args": {"instruction": "\"Context: Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-C. Variant rs116805908 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene SLC22A5. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Gene MIR146A associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNXB. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs458017 associates Disease psoriatic arthritis. Variant rs149997688 associates Disease psoriatic arthritis. Gene MIR424 associates Disease psoriatic arthritis. Variant rs115112280 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL13. Variant rs76956521 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Gene MIR15A associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene POU5F1. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs28780111 associates Disease psoriatic arthritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant rs9266745 associates Disease Takayasu's arteritis. Variant rs2322599 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DQB2. Disease Takayasu's arteritis associates Gene ABHD16A. Disease Takayasu's arteritis associates Gene PTK2B. Variant rs10919543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PSORS1C1. Disease Takayasu's arteritis associates Gene LY6G5C. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene GPANK1. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs1383258 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G6F. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs4817988 associates Disease Takayasu's arteritis. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Variant rs12980600 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Variant rs2836883 associates Disease Takayasu's arteritis. Variant rs28834970 associates Disease Takayasu's arteritis. Variant rs2844678 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G5B. Disease Takayasu's arteritis associates Gene KLHL33. Variant HLAB*1302 associates Disease Takayasu's arteritis. Variant rs12524487 associates Disease Takayasu's arteritis. Variant rs12524487\\xa0 associates Disease Takayasu's arteritis. \\nQuestion: Out of the given list, which Gene is associated with psoriatic arthritis and Takayasu's arteritis. Given list is: TMC7, HLA-B, SLC2A9, PCDH7, PHGDH\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048747.167912}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10de30939c6c906274602c92f8cee646/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10de30939c6c906274602c92f8cee646/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/10de30939c6c906274602c92f8cee646/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/123d70ba09b706c74e1d2406d9eb9bb8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/123d70ba09b706c74e1d2406d9eb9bb8/metadata.json new file mode 100644 index 0000000..0a76c43 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/123d70ba09b706c74e1d2406d9eb9bb8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5142905712127686, "input_args": {"instruction": "'Context: Disease developmental and epileptic encephalopathy 91 associates Gene PPP3CA. Disease developmental and epileptic encephalopathy 91 presents Symptom Focal motor seizure. Disease developmental and epileptic encephalopathy 91 presents Symptom Seizures. Disease developmental and epileptic encephalopathy 91 presents Symptom Seizure. Disease developmental and epileptic encephalopathy 91 presents Symptom Abnormality of the nervous system. Disease developmental and epileptic encephalopathy 91 presents Symptom Generalized non-motor (absence) seizure. Disease developmental and epileptic encephalopathy 91 isa Disease autosomal dominant disease. Disease developmental and epileptic encephalopathy 91 presents Symptom Abnormal foot morphology.. Disease focal epilepsy associates Gene SCN2A. Disease focal epilepsy associates Gene SCN1A. Disease focal epilepsy associates Gene SLC13A5. Disease focal epilepsy associates Gene SLC38A3. Disease focal epilepsy associates Gene SCN1B. Variant rs1057519543 associates Disease focal epilepsy. Disease focal epilepsy associates Gene KCNT1. Variant rs1057519541 associates Disease focal epilepsy. Disease focal epilepsy associates Gene KCNQ5. Disease focal epilepsy associates Gene EPB41L1. Variant rs1057519525 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CACNA1I. Variant rs1057519554 associates Disease focal epilepsy. Variant rs587784440 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CAMK2B. Variant rs200694691 associates Disease focal epilepsy. Variant rs587780455 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CAMK2A. Disease focal epilepsy associates Gene SLC33A1. Disease focal epilepsy associates Gene SCN9A. Disease focal epilepsy associates Gene KIF1A. Disease focal epilepsy associates Gene CHRNB2. Variant rs1318322 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CHRNA4. Disease focal epilepsy associates Gene GJC2. Disease focal epilepsy associates Gene CSNK2B. Disease focal epilepsy associates Gene CHRNA2. Disease focal epilepsy associates Gene NBEA. Disease focal epilepsy associates Gene KCNQ2. Variant rs121917993 associates Disease focal epilepsy. Disease developmental and epileptic encephalopathy 93 associates Gene ATP6V1A. Disease developmental and epileptic encephalopathy 93 presents Symptom Seizures. Disease developmental and epileptic encephalopathy 93 presents Symptom Seizure. Disease developmental and epileptic encephalopathy 93 presents Symptom Seizures, Febrile. Variant rs371141951 associates Disease developmental and epileptic encephalopathy 51. Variant rs1057519566 associates Disease developmental and epileptic encephalopathy 51.. Variant rs373614243 associates Disease developmental and epileptic encephalopathy 51. Variant rs1057519567 associates Disease developmental and epileptic encephalopathy 51. Variant rs782308462 associates Disease developmental and epileptic encephalopathy 51. Variant rs375002796 associates Disease developmental and epileptic encephalopathy 51. Variant rs782204186 associates Disease developmental and epileptic encephalopathy 51. Variant rs1797376152 associates Disease developmental and epileptic encephalopathy 51. Variant rs1797912166 associates Disease developmental and epileptic encephalopathy 51. Disease developmental and epileptic encephalopathy 51 presents Symptom Seizures. Variant rs573903898 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs896341039 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1057520468 associates Disease cortical dysplasia-focal epilepsy syndrome.. Variant rs139234992 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1057522590 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs368905425 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs142623983 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs893619983 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs575958976 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs142149051 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1325468046 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1423537879 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1329353667 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs142984073 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs200823464 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1444957856 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1359189375 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs587780903 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1269648909 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1057522233 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1427207833 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs369699763 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs139930720 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1374907989 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs114585910 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs370377093 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1795663851 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs927092071 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1169812593 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1034170979 associates Disease cortical dysplasia-focal epilepsy syndrome. \\nQuestion: Out of the given list, which Gene is associated with focal epilepsy and epilepsy. Given list is: SCN1A, ABCG2, DTNB, LRMDA, CPS1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989468.0801246}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/123d70ba09b706c74e1d2406d9eb9bb8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/123d70ba09b706c74e1d2406d9eb9bb8/output.pkl Binary files differnew file mode 100644 index 0000000..370efe0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/123d70ba09b706c74e1d2406d9eb9bb8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/144bdc6deab96c47ca104ca48c892e96/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/144bdc6deab96c47ca104ca48c892e96/metadata.json new file mode 100644 index 0000000..ac5946a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/144bdc6deab96c47ca104ca48c892e96/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7076008319854736, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with duodenal ulcer and pancreatic carcinoma. Given list is: YLPM1, CFH, ABO, KALRN, STAT6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990059.5619738}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/144bdc6deab96c47ca104ca48c892e96/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/144bdc6deab96c47ca104ca48c892e96/output.pkl Binary files differnew file mode 100644 index 0000000..9968202 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/144bdc6deab96c47ca104ca48c892e96/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14745327a96d7ec68712cb9970d62442/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14745327a96d7ec68712cb9970d62442/metadata.json new file mode 100644 index 0000000..ee660b3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14745327a96d7ec68712cb9970d62442/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4086320400238037, "input_args": {"instruction": "'Context: Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Gene MIR485 associates Disease cutaneous lupus erythematosus. Disease cutaneous lupus erythematosus associates Gene CSNK2B. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease lymphocytic colitis. Disease collagenous colitis resembles Disease toxic megacolon. \\nQuestion: Out of the given list, which Gene is associated with cutaneous lupus erythematosus and collagenous colitis. Given list is: MUC5B, DLEU7, BRCA2, HLA-DQA1, THADA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047940.6455276}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14745327a96d7ec68712cb9970d62442/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14745327a96d7ec68712cb9970d62442/output.pkl Binary files differnew file mode 100644 index 0000000..5a2c81e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14745327a96d7ec68712cb9970d62442/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14a152f5e70d238b04aff10375f16c5d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14a152f5e70d238b04aff10375f16c5d/metadata.json new file mode 100644 index 0000000..65941c2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14a152f5e70d238b04aff10375f16c5d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.53501296043396, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with prostate carcinoma and large intestine cancer. Given list is: rs6983267, rs1150757, rs3129939, rs12917707, rs595244'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050468.111752}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14a152f5e70d238b04aff10375f16c5d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14a152f5e70d238b04aff10375f16c5d/output.pkl Binary files differnew file mode 100644 index 0000000..1f60006 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/14a152f5e70d238b04aff10375f16c5d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15af12b9c8b92a4cd91daacc69edb40d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15af12b9c8b92a4cd91daacc69edb40d/metadata.json new file mode 100644 index 0000000..1e0feac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15af12b9c8b92a4cd91daacc69edb40d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.843529462814331, "input_args": {"instruction": "'Context: Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs3094067 associates Disease cutaneous lupus erythematosus. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with cutaneous lupus erythematosus and autoimmune hepatitis. Given list is: FGFR2, TERT, HLA-DQA1, IL6, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047936.2888417}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15af12b9c8b92a4cd91daacc69edb40d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15af12b9c8b92a4cd91daacc69edb40d/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15af12b9c8b92a4cd91daacc69edb40d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15ef98215b1ba8d89187d2de397bf5ba/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15ef98215b1ba8d89187d2de397bf5ba/metadata.json new file mode 100644 index 0000000..7dbb224 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15ef98215b1ba8d89187d2de397bf5ba/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5539882183074951, "input_args": {"instruction": "'Context: Variant rs769053835 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene PTPN11. Disease myelodysplastic syndrome associates Gene CLPB. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Variant rs769081887 associates Disease myelodysplastic syndrome. Variant rs1576745225 associates Disease myelodysplastic syndrome. Variant rs387906631 associates Disease myelodysplastic syndrome. Variant rs752746786 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs371769427 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Variant rs121913237 associates Disease myelodysplastic syndrome. Variant rs121913500 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene DNAJC21. Disease myelodysplastic syndrome associates Gene THPO. Variant rs121434596 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene HSPA9. Variant rs78898975 associates Disease myelodysplastic syndrome. Variant rs377023736 associates Disease myelodysplastic syndrome. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs11540652 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Disease myelodysplastic syndrome associates Gene PALB2. Variant rs104894229 associates Disease myelodysplastic syndrome.. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCC. Variant rs12203592 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCD2. Disease myelodysplastic syndrome associates Gene FANCL. Variant rs267606870 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene FANCM. Variant rs147001633 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCI. Disease myelodysplastic syndrome associates Gene FANCG. Disease myelodysplastic syndrome associates Gene FANCE. Disease myelodysplastic syndrome associates Gene SRP72. Disease myelodysplastic syndrome associates Gene SLX4. Disease myelodysplastic syndrome associates Gene MPL. Disease myelodysplastic syndrome associates Gene TET2. Disease myelodysplastic syndrome associates Gene GATA1. Disease myelodysplastic syndrome associates Gene RUNX1. Disease myelodysplastic syndrome associates Gene RPS14. Disease myelodysplastic syndrome associates Gene HSCB. Disease myelodysplastic syndrome associates Gene EFL1. Disease myelodysplastic syndrome associates Gene GATA2. Disease myelodysplastic syndrome associates Gene BRAF. Gene MIR16-1 associates Disease myelodysplastic syndrome. Gene MIR378A associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAF1. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs2844624 x rs2523619 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs6929464 x rs1265112 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs4358666 x rs6916062 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant rs76956521 x rs13191519 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis. Variant rs13210132 x rs130069 associates Disease psoriasis. Variant rs1265114 x rs4358666 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant rs13191519 x rs4418214 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs6929464 x rs1639110 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant rs1265067 x rs4358666 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs2894176 x rs12191877 associates Disease psoriasis. Variant rs1265112 x rs4358666 associates Disease psoriasis. Variant rs13203895 x rs4418214 associates Disease psoriasis. Variant rs2853952 x rs2523535 associates Disease psoriasis. Variant rs12191877 x rs2523708 associates Disease psoriasis. Variant rs746647 x rs4358666 associates Disease psoriasis. Variant rs1265079 x rs4358666 associates Disease psoriasis. Disease psoriasis associates Gene PTPN2. Variant rs28894086 x rs1265078 associates Disease psoriasis. Variant rs2853952 x rs45533135 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs6931633 x rs2853935 associates Disease psoriasis. Disease psoriasis associates Gene RUNX1. Variant rs6931633 x rs2524163 associates Disease psoriasis. Variant rs13191519 x rs45533135 associates Disease psoriasis. Variant rs130069 x rs9267673 associates Disease psoriasis. Variant rs6931633 x rs28575156 associates Disease psoriasis. Variant rs6911408 x rs9468932 associates Disease psoriasis. Variant rs12191877 x rs2534666 associates Disease psoriasis. Variant rs7750641 x rs2524096 associates Disease psoriasis. Variant rs13210132 x rs45533135 associates Disease psoriasis. Variant rs1639110 x rs17206680 associates Disease psoriasis. Variant rs75851973 x rs13191519 associates Disease psoriasis. Variant rs2524096 x rs28575156 associates Disease psoriasis. Variant rs1265114 x rs34100370 associates Disease psoriasis. Disease psoriasis associates Gene HLA-B. Variant rs4685408 associates Disease psoriasis. Variant rs6913137 x rs130069 associates Disease psoriasis. Variant rs130076 x rs9380238 associates Disease psoriasis. Disease psoriasis associates Gene ZFYVE16. Variant rs3132506 x rs45533135 associates Disease psoriasis. Variant rs3130517 x rs12191877 associates Disease psoriasis. Variant rs4795067 associates Disease psoriasis. Variant rs1960278 x rs4947314 associates Disease psoriasis. Variant chr12: 56741228 associates Disease psoriasis. Variant rs2524052 x rs4947314 associates Disease psoriasis. Variant rs1639110 x rs4358666 associates Disease psoriasis. Variant rs45533135 x rs9267464 associates Disease psoriasis. Variant rs2244027 x rs12191877 associates Disease psoriasis. Variant rs13202464 x rs9267677 associates Disease psoriasis. Variant rs1265112 x rs34100370 associates Disease psoriasis. Variant rs1265078 x rs9380237 associates Disease psoriasis. Variant rs9366778 x rs4959062 associates Disease psoriasis. Variant rs3131788 x rs2524096 associates Disease psoriasis. Variant rs12586317 associates Disease psoriasis. Variant rs2844603 x rs9468932 associates Disease psoriasis. Variant chr1: 152591953 associates Disease psoriasis. \\nQuestion: Out of the given list, which Gene is associated with myelodysplastic syndrome and psoriasis. Given list is: VAV3, TERT, CLPTM1L, PTPN22, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989826.4972146}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15ef98215b1ba8d89187d2de397bf5ba/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15ef98215b1ba8d89187d2de397bf5ba/output.pkl Binary files differnew file mode 100644 index 0000000..f7a6ee0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/15ef98215b1ba8d89187d2de397bf5ba/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/160cc345761964932a7f0f94d6f4bbd0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/160cc345761964932a7f0f94d6f4bbd0/metadata.json new file mode 100644 index 0000000..75af551 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/160cc345761964932a7f0f94d6f4bbd0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5198636054992676, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cocaine dependence and mature B-cell neoplasm. Given list is: CHST11, GSDMB, ERAP1, TP63, SLC14A2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047787.859389}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/160cc345761964932a7f0f94d6f4bbd0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/160cc345761964932a7f0f94d6f4bbd0/output.pkl Binary files differnew file mode 100644 index 0000000..4d008d4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/160cc345761964932a7f0f94d6f4bbd0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1629a36e506991759f7098d6cfb4b29b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1629a36e506991759f7098d6cfb4b29b/metadata.json new file mode 100644 index 0000000..e20763c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1629a36e506991759f7098d6cfb4b29b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6299841403961182, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and estrogen-receptor negative breast cancer. Given list is: TERT, KIT, DGKK, ATP2B1, IL6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989513.2640195}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1629a36e506991759f7098d6cfb4b29b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1629a36e506991759f7098d6cfb4b29b/output.pkl Binary files differnew file mode 100644 index 0000000..88c1b4d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1629a36e506991759f7098d6cfb4b29b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/167e82a36e43befce4805ee5ff3c8af1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/167e82a36e43befce4805ee5ff3c8af1/metadata.json new file mode 100644 index 0000000..9597a3b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/167e82a36e43befce4805ee5ff3c8af1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48624658584594727, "input_args": {"instruction": "'Context: Disease nephrotic syndrome associates Gene TP53RK. Disease nephrotic syndrome associates Gene HLA-DQB1. Disease nephrotic syndrome associates Gene CCND1. Disease nephrotic syndrome associates Gene C1QBP. Variant rs1601356283 associates Disease nephrotic syndrome. Variant rs1569495819 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ANLN. Disease nephrotic syndrome associates Gene CRB2. Disease nephrotic syndrome associates Gene ZFPM2. Disease nephrotic syndrome associates Gene ITGA3. Variant rs529211517 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Variant rs554480714 associates Disease nephrotic syndrome. Variant rs4642516 associates Disease nephrotic syndrome. Variant rs1223251037 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene GATA3. Gene MIR15A associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene OSGEP. Variant rs570583897 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A4. Variant rs959473971 associates Disease nephrotic syndrome. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PTPRO. Gene MIR503 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IFIH1. Gene MIR586 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A5. Variant rs369558225 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene LIG4. Variant rs1555331969 associates Disease nephrotic syndrome. Variant rs149560153 associates Disease nephrotic syndrome. Variant rs565501407 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ZNF592. Variant rs530318579 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A3. Disease nephrotic syndrome associates Gene DCLRE1C. Variant rs762704370 associates Disease nephrotic syndrome. Variant rs370860586 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SLC17A5. Disease nephrotic syndrome associates Gene TBC1D8B. Variant rs145623004 associates Disease nephrotic syndrome. Variant rs1973174583 associates Disease nephrotic syndrome. Variant rs534522842 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PAX2. Variant rs2051495579 associates Disease nephrotic syndrome. Variant rs140781106 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IL2RG. Variant rs4979462 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Variant rs2079386835 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ZAP70. Disease nephrotic syndrome associates Gene SLC35A2. Variant rs1555763603 associates Disease nephrotic syndrome. Variant rs1054215531 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Variant rs1973238637 associates Disease nephrotic syndrome. Variant rs1589475328 associates Disease nephrotic syndrome. Variant rs140511594 associates Disease nephrotic syndrome. Variant rs118203956 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Variant rs114203578 associates Disease nephrotic syndrome. Variant rs886058680 associates Disease nephrotic syndrome. Variant rs9273542 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TNFSF15. Variant rs1568296260 associates Disease nephrotic syndrome. Variant rs886058682 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP85. Disease nephrotic syndrome associates Gene PLCE1. Variant rs2016645859 associates Disease nephrotic syndrome. Variant rs150183033 associates Disease nephrotic syndrome. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs886058681 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene WDPCP. Disease oral cavity cancer associates Gene HLA-DQB1. Disease oral cavity cancer associates Gene GPN1.. Variant rs201982221 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Variant rs10851478 associates Disease oral cavity cancer. Disease oral cavity cancer associates Gene CLPTM1L. Variant rs121909224 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. \\nQuestion: Out of the given list, which Gene is associated with nephrotic syndrome and oral cavity cancer. Given list is: CRTC1, PLG, AHR, SLC14A2, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990132.2904243}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/167e82a36e43befce4805ee5ff3c8af1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/167e82a36e43befce4805ee5ff3c8af1/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/167e82a36e43befce4805ee5ff3c8af1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18477f7f86a8d3b6b153170c6bfc33de/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18477f7f86a8d3b6b153170c6bfc33de/metadata.json new file mode 100644 index 0000000..2dbe585 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18477f7f86a8d3b6b153170c6bfc33de/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5215811729431152, "input_args": {"instruction": "'Context: Disease herpes zoster associates Gene HLA-A. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene STAT1. Variant rs142765674 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Disease herpes zoster associates Gene FAM110B. Variant rs144721899 associates Disease herpes zoster. Variant rs147482218 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT3. Disease herpes zoster associates Gene POLR3C. Variant rs117171752 associates Disease herpes zoster. Variant rs765885335 associates Disease herpes zoster. Variant rs541558502 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Disease herpes zoster associates Gene POLR3A. Variant rs75640364 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster associates Gene LRRC32. Disease facial dermatosis resembles Disease herpes zoster. Disease herpes zoster presents Symptom Facial Pain. Disease peroneal neuropathy resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy skin of body. Disease herpes zoster presents Symptom Hyperesthesia. Disease trigeminal neuralgia resembles Disease herpes zoster. Disease herpes zoster presents Symptom Hypesthesia. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes simplex virus keratitis resembles Disease herpes zoster. Disease facial nerve disease resembles Disease herpes zoster. Disease keratitis resembles Disease herpes zoster. Disease herpes zoster isa Disease viral infectious disease. Disease herpes zoster presents Symptom Toothache. Compound Pregabalin treats Disease herpes zoster. Disease herpes zoster resembles Disease genital herpes. Disease herpes zoster localizes Anatomy face. Disease herpes zoster presents Symptom Neuralgia. Disease herpes zoster localizes Anatomy facial nerve. Disease herpes zoster presents Symptom Neuralgia, Postherpetic. Disease peroneal nerve paralysis resembles Disease herpes zoster. Disease psoriasis associates Gene HLA-DQB1. Disease psoriasis associates Gene HLA-B. Disease psoriasis associates Gene HLA-DRB1. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant chr6: 159506600 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant rs6911408 x rs9468932 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant chr1: 152591953 associates Disease psoriasis. Variant chr1: 8286009 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs28894086 x rs3130517 associates Disease psoriasis. Variant rs3130506 x rs2249742 associates Disease psoriasis. Variant rs28894086 x rs1265078 associates Disease psoriasis. Variant rs2853950 x rs3130573 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs6931633 x rs2853935 associates Disease psoriasis. Variant rs9504361 associates Disease psoriasis. Variant rs9533962 associates Disease psoriasis. Variant chr5: 96118852 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant rs16898629 x rs6913137 associates Disease psoriasis. Variant chr10: 75601596 associates Disease psoriasis. Variant rs4358666 x rs6916062 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs9264602 x rs9468914 associates Disease psoriasis. Variant chr18: 51816394 associates Disease psoriasis. Variant rs130069 x rs9267673 associates Disease psoriasis. Variant chr6: 138197824 associates Disease psoriasis. Variant rs4358666 x rs9468992 associates Disease psoriasis. Variant chr5: 150469973 associates Disease psoriasis. Variant rs9513593 associates Disease psoriasis. Variant chr1: 25291010 associates Disease psoriasis. Variant chr11: 128391937 associates Disease psoriasis. Variant chr3: 16996623 associates Disease psoriasis. Variant rs9366778 x rs4959062 associates Disease psoriasis. Variant rs12527188 x rs2853961 associates Disease psoriasis. Variant rs2853952 x rs2523535 associates Disease psoriasis. Variant chr6: 111929862 associates Disease psoriasis. Variant chr12: 56741228 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant rs76956521 x rs13191519 associates Disease psoriasis. Variant rs75851973 x rs13191519 associates Disease psoriasis. Variant chr7: 37385365 associates Disease psoriasis. Variant chr6: 20689945 associates Disease psoriasis. Variant chr5: 158829527 associates Disease psoriasis. Variant rs45533135 x rs9267464 associates Disease psoriasis. Variant rs6931633 x rs2524163 associates Disease psoriasis. Variant rs4795067 associates Disease psoriasis. Variant chr6: 30916259 associates Disease psoriasis. Variant rs2853952 x rs45533135 associates Disease psoriasis. Variant rs144098432 associates Disease psoriasis. Variant chr5: 131996445 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs2524096 x rs3130612 associates Disease psoriasis. Variant rs6929464 x rs1265112 associates Disease psoriasis. Variant rs6931633 x rs28575156 associates Disease psoriasis. Variant rs2844603 x rs9468932 associates Disease psoriasis. Variant chr9: 110792282 associates Disease psoriasis. Variant rs6913137 x rs130069 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Disease psoriasis associates Gene IFIH1. Variant rs3130982 x rs9366778 associates Disease psoriasis. Variant rs130076 x rs9380238 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant rs3131788 x rs2524096 associates Disease psoriasis. Variant rs13210132 x rs130069 associates Disease psoriasis. Variant rs3130517 x rs12191877 associates Disease psoriasis. Variant rs6933647 x rs2524096 associates Disease psoriasis. Variant chr13: 45321731 associates Disease psoriasis. Variant rs2524096 x rs28575156 associates Disease psoriasis. \\nQuestion: Out of the given list, which Gene is associated with herpes zoster and psoriasis. Given list is: HLA-DQB1, HOXD3, FAM227B, DNMT3A, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990011.2639878}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18477f7f86a8d3b6b153170c6bfc33de/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18477f7f86a8d3b6b153170c6bfc33de/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18477f7f86a8d3b6b153170c6bfc33de/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/186d8f739cb53f47ba9b17ecbaa2db9d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/186d8f739cb53f47ba9b17ecbaa2db9d/metadata.json new file mode 100644 index 0000000..89f9968 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/186d8f739cb53f47ba9b17ecbaa2db9d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5198593139648438, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with duodenal ulcer and atrophic gastritis. Given list is: rs1975197, rs2294008, rs17398575, rs755383, rs1801274'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048931.5741296}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/186d8f739cb53f47ba9b17ecbaa2db9d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/186d8f739cb53f47ba9b17ecbaa2db9d/output.pkl Binary files differnew file mode 100644 index 0000000..3e2b217 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/186d8f739cb53f47ba9b17ecbaa2db9d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18704f74f634ffd52c9426cdc8e67003/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18704f74f634ffd52c9426cdc8e67003/metadata.json new file mode 100644 index 0000000..3310d31 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18704f74f634ffd52c9426cdc8e67003/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5768582820892334, "input_args": {"instruction": "'Context: Disease myelodysplastic syndrome associates Gene FANCB. Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs387906631 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCL. Disease myelodysplastic syndrome associates Gene FANCC. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene FANCD2. Disease myelodysplastic syndrome associates Gene FANCM. Disease myelodysplastic syndrome associates Gene FANCG. Disease myelodysplastic syndrome associates Gene FANCI. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCE. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs752746786 associates Disease myelodysplastic syndrome. Variant rs104894229 associates Disease myelodysplastic syndrome.. Variant rs371769427 associates Disease myelodysplastic syndrome. Variant rs769053835 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Variant rs11540652 associates Disease myelodysplastic syndrome. Gene MIR16-2 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Gene MIR16-1 associates Disease myelodysplastic syndrome. Variant rs1576745225 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs12203592 associates Disease myelodysplastic syndrome. Gene MIR124-2 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Gene MIR378A associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene MDM2. Gene MIR124-3 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPL35A. Variant rs121913500 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Gene MIR424 associates Disease myelodysplastic syndrome. Variant rs121913237 associates Disease myelodysplastic syndrome. Gene MIR1-2 associates Disease myelodysplastic syndrome. Variant rs147001633 associates Disease myelodysplastic syndrome. Variant rs121434596 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CEP57. Disease myelodysplastic syndrome associates Gene DKC1. Variant rs769081887 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA1. Disease myelodysplastic syndrome associates Gene RPL35. Disease myelodysplastic syndrome associates Gene RPL31. Disease myelodysplastic syndrome associates Gene ERCC4. Gene MIR125B1 associates Disease myelodysplastic syndrome. Gene MIR15A associates Disease myelodysplastic syndrome. Gene MIR17 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene SLX4. Variant rs121913499 associates Disease myelodysplastic syndrome. Gene MIR143 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene DDX41. Variant rs377023736 associates Disease myelodysplastic syndrome. Variant rs193303018 associates Disease myelodysplastic syndrome. Gene MIR1-1 associates Disease myelodysplastic syndrome. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Disease ontology identifier of diffuse large B-cell lymphoma is DOID:0050745. \\nQuestion: Out of the given list, which Gene is associated with myelodysplastic syndrome and diffuse large B-cell lymphoma. Given list is: MIF, TDP2, TMEM71, HLA-DQA1, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989833.1465964}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18704f74f634ffd52c9426cdc8e67003/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18704f74f634ffd52c9426cdc8e67003/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18704f74f634ffd52c9426cdc8e67003/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18e69b76b9b45d68127e74d8d2bc4d35/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18e69b76b9b45d68127e74d8d2bc4d35/metadata.json new file mode 100644 index 0000000..afda4a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18e69b76b9b45d68127e74d8d2bc4d35/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6249957084655762, "input_args": {"instruction": "'Context: Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene JAK3. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Disease immunoglobulin alpha deficiency associates Gene PLCG2. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease immunoglobulin alpha deficiency associates Gene ZNF341. Disease immunoglobulin alpha deficiency associates Gene RAG1. Disease immunoglobulin alpha deficiency associates Gene RAG2. Disease immunoglobulin alpha deficiency associates Gene IGLL1. Variant rs1244181 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene ATP6AP1. Disease immunoglobulin alpha deficiency associates Gene ADA. Disease immunoglobulin alpha deficiency associates Gene PIGT. Variant rs11299600 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Disease immunoglobulin alpha deficiency associates Gene IFIH1. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene CASP8. Disease immunoglobulin alpha deficiency associates Gene AICDA. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and autoimmune hepatitis. Given list is: SLC14A2, PRKAG2, HLA-DQA1, HLA-DQA1, PLG'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047710.0415745}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18e69b76b9b45d68127e74d8d2bc4d35/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18e69b76b9b45d68127e74d8d2bc4d35/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/18e69b76b9b45d68127e74d8d2bc4d35/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a228f486b7c767992a50e978617b1f0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a228f486b7c767992a50e978617b1f0/metadata.json new file mode 100644 index 0000000..ea0038d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a228f486b7c767992a50e978617b1f0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4120309352874756, "input_args": {"instruction": "'Context: Disease ontology identifier of psoriasis 4 is DOID:0111280. Disease psoriasis 1 associates Gene HLA-C.. Variant rs11653893 associates Disease psoriasis 2.. Variant rs11652075 associates Disease psoriasis 2. Variant rs587777763 associates Disease psoriasis 2. Variant rs281875215 associates Disease psoriasis 2. Variant rs2853952 x rs13202464 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DQB1. Disease psoriasis associates Gene HLA-B. Disease psoriasis associates Gene GJB2. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant chr1: 152591953 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DRB1. Disease psoriasis associates Gene DNAJB4. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant chr6: 159506600 associates Disease psoriasis. Variant chr10: 75601596 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs2844624 x rs2523619 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant chr5: 96118852 associates Disease psoriasis. Variant rs4358666 x rs6916062 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant rs17728338 x rs13203895 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs9366778 x rs4959062 associates Disease psoriasis. Disease psoriasis associates Gene GJB6. Variant chr5: 158829527 associates Disease psoriasis. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant chr1: 8286009 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Disease psoriasis 13 associates Gene TRAF3IP2.. \\nQuestion: Out of the given list, which Gene is associated with psoriasis and myelodysplastic syndrome. Given list is: NOD2, CHEK2, HLA-B, GCKR, PKNOX2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988417.4370184}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a228f486b7c767992a50e978617b1f0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a228f486b7c767992a50e978617b1f0/output.pkl Binary files differnew file mode 100644 index 0000000..eaa8405 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a228f486b7c767992a50e978617b1f0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a2403718097561a619cade74c205ef2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a2403718097561a619cade74c205ef2/metadata.json new file mode 100644 index 0000000..2010e0f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a2403718097561a619cade74c205ef2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48163366317749023, "input_args": {"instruction": "'Context: Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Gene MIR122 associates Disease autoimmune hepatitis. Disease ontology identifier of autoimmune hepatitis is DOID:2048. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs1233491 associates Disease cutaneous lupus erythematosus. Variant rs3094067 associates Disease cutaneous lupus erythematosus. \\nQuestion: Out of the given list, which Variant is associated with autoimmune hepatitis and cutaneous lupus erythematosus. Given list is: rs2187668, rs11724804, rs10497394, rs1801274, rs6457327'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048874.9758697}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a2403718097561a619cade74c205ef2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a2403718097561a619cade74c205ef2/output.pkl Binary files differnew file mode 100644 index 0000000..ca7489c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a2403718097561a619cade74c205ef2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a263766adf7097cf6426097e28a5ed4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a263766adf7097cf6426097e28a5ed4/metadata.json new file mode 100644 index 0000000..fb24610 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a263766adf7097cf6426097e28a5ed4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.607161283493042, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with duodenal ulcer and gastric fundus cancer. Given list is: CACNA1S, MUC5B, FBN1, PSCA, BTC'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990061.2322803}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a263766adf7097cf6426097e28a5ed4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a263766adf7097cf6426097e28a5ed4/output.pkl Binary files differnew file mode 100644 index 0000000..82cc191 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a263766adf7097cf6426097e28a5ed4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a631778630be7e828994c041b066970/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a631778630be7e828994c041b066970/metadata.json new file mode 100644 index 0000000..bfc68c7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a631778630be7e828994c041b066970/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9208731651306152, "input_args": {"instruction": "'Context: Variant rs12195582 associates Disease mature B-cell neoplasm. Variant rs10484561 associates Disease mature B-cell neoplasm. Variant rs4938573 associates Disease mature B-cell neoplasm. Variant rs735665 associates Disease mature B-cell neoplasm. Variant rs191648835 associates Disease androgenic alopecia. Variant rs200644307 associates Disease androgenic alopecia. Variant rs115182912 associates Disease androgenic alopecia. Variant rs4679956 associates Disease androgenic alopecia. Variant rs11593840 associates Disease androgenic alopecia. Variant rs3781458 associates Disease androgenic alopecia. Variant rs3781452 associates Disease androgenic alopecia. Variant rs2149150 associates Disease androgenic alopecia. Variant rs180807105 associates Disease androgenic alopecia. Variant rs2180439 associates Disease androgenic alopecia. Variant rs182973285 associates Disease androgenic alopecia. Variant rs11694173 associates Disease androgenic alopecia. Variant rs8085664 associates Disease androgenic alopecia. Variant rs6945541 associates Disease androgenic alopecia. Variant rs62146540 associates Disease androgenic alopecia. Variant rs9282858 associates Disease androgenic alopecia. Variant rs35892873 associates Disease androgenic alopecia. Variant rs12203592 associates Disease androgenic alopecia. Variant rs62385385 associates Disease androgenic alopecia. Variant rs9719620 associates Disease androgenic alopecia. Variant rs201408539 associates Disease androgenic alopecia. Variant rs919462 associates Disease androgenic alopecia. Variant rs185597083 associates Disease androgenic alopecia. Variant rs17833789 associates Disease androgenic alopecia. Variant rs552649178 associates Disease androgenic alopecia. Variant rs12902958 associates Disease androgenic alopecia. Variant rs6047844 associates Disease androgenic alopecia. Variant rs11684254 associates Disease androgenic alopecia. Variant rs9398803 associates Disease androgenic alopecia.. Variant rs34991987 associates Disease androgenic alopecia. Variant rs12752809 associates Disease androgenic alopecia. Variant rs9287638 associates Disease androgenic alopecia. Variant rs2095921 associates Disease androgenic alopecia. Variant rs5933688 associates Disease androgenic alopecia. Variant rs2073963 associates Disease androgenic alopecia. Variant rs13405699 associates Disease androgenic alopecia. \\nQuestion: Out of the given list, which Gene is associated with mature B-cell neoplasm and androgenic alopecia. Given list is: HLA-DPA1, PRKAG2, ERAP1, SLC14A2, FER'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989592.80068}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a631778630be7e828994c041b066970/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a631778630be7e828994c041b066970/output.pkl Binary files differnew file mode 100644 index 0000000..18c7b6b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1a631778630be7e828994c041b066970/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ae856a9bfff1badcc73f9aea317a262/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ae856a9bfff1badcc73f9aea317a262/metadata.json new file mode 100644 index 0000000..6a23533 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ae856a9bfff1badcc73f9aea317a262/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6238110065460205, "input_args": {"instruction": "'Context: Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene PEX14. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs35840638 associates Disease estrogen-receptor negative breast cancer. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs72993806 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs8170 associates Disease estrogen-receptor negative breast cancer. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Variant rs2747652 associates Disease estrogen-receptor negative breast cancer. Variant rs17356907 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs3760982 associates Disease estrogen-receptor negative breast cancer. Variant rs11571833 associates Disease estrogen-receptor negative breast cancer. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs10771399 associates Disease estrogen-receptor negative breast cancer. Variant rs116906005 associates Disease interstitial lung disease. Variant rs2076295 associates Disease interstitial lung disease. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-B. Variant rs35705950 associates Disease interstitial lung disease. Variant rs73199442 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene PTPN22. Variant rs2034650 associates Disease interstitial lung disease. Variant rs6477542 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA1. Variant rs6886640 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TGFB1. Disease interstitial lung disease associates Gene TERT. Variant rs2736100 associates Disease interstitial lung disease. Variant rs561398374 associates Disease interstitial lung disease. Variant rs11191865 associates Disease interstitial lung disease. Variant rs1981997 associates Disease interstitial lung disease. Variant rs6631122 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene IL2RA. Variant rs4727443 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene STAT5B. Disease interstitial lung disease associates Gene MUC5B. Variant rs12702634 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA2. Variant rs2957316 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ERF. Disease interstitial lung disease associates Gene SFTPB. Disease interstitial lung disease associates Gene NKX2-1. Disease interstitial lung disease associates Gene SCARB2. Variant rs6793295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene IL1RN. Disease interstitial lung disease associates Gene CCN2. Variant rs912535 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAI1. Variant rs7744971 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene AP3B1. Disease interstitial lung disease associates Gene SP110. Variant rs1278769 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-DPB1. Disease interstitial lung disease associates Gene IL2RB. Disease interstitial lung disease associates Gene TP53. Disease interstitial lung disease associates Gene PRTN3. Disease interstitial lung disease associates Gene PLCG2. Disease interstitial lung disease associates Gene BNC1. Disease interstitial lung disease associates Gene SFTPC. Disease interstitial lung disease associates Gene CSF2RB. Disease interstitial lung disease associates Gene CCNO. Variant rs12610495 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ZNFX1. Disease interstitial lung disease associates Gene STXBP2. Disease interstitial lung disease associates Gene CCR6. Variant rs7734992 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAI2. Variant rs7934606 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene BACH2. Disease interstitial lung disease associates Gene FSHR. Disease interstitial lung disease associates Gene CCDC65. Gene MIR128-2 associates Disease interstitial lung disease. Gene MIR92B associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene OFD1. Variant rs2609255 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NPC2. Disease interstitial lung disease associates Gene IRF5. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene PIK3CG. Disease interstitial lung disease associates Gene HLA-DRB1. Disease interstitial lung disease associates Gene CSF2RA. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and interstitial lung disease. Given list is: FAM227B, PTPN22, PSCA, ABO, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048010.9528801}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ae856a9bfff1badcc73f9aea317a262/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ae856a9bfff1badcc73f9aea317a262/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ae856a9bfff1badcc73f9aea317a262/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1b14ad3afbeeef9c018a21a6163ab428/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1b14ad3afbeeef9c018a21a6163ab428/metadata.json new file mode 100644 index 0000000..b5ea521 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1b14ad3afbeeef9c018a21a6163ab428/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6220352649688721, "input_args": {"instruction": "'Context: Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene ATM. Disease myeloproliferative neoplasm associates Gene THPO.. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene JAK2. Disease myeloproliferative neoplasm associates Gene TET2. Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease lung carcinoma associates Gene MPZL2. Variant rs11610143 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CLPTM1L. Variant rs116295105 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs28412066 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs28408315 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Disease lung carcinoma associates Gene CHEK2. Variant rs4398410 associates Disease lung carcinoma. Variant rs17879961 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs13217620 associates Disease lung carcinoma. Variant rs138488080 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs113488022 associates Disease lung carcinoma. Variant rs16832404 x rs2562796 associates Disease lung carcinoma. Disease lung carcinoma associates Gene MSH5. Variant rs1057519720 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs1057520015 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Disease lung carcinoma associates Gene POT1. Variant rs397517128 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs148934350 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs35952432 associates Disease lung carcinoma. Disease lung carcinoma associates Gene DCBLD1. Variant rs397517085 associates Disease lung carcinoma. Disease lung carcinoma associates Gene MTMR3. Variant rs577626090 associates Disease lung carcinoma. Variant rs180177042 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Disease lung carcinoma associates Gene PPP1R18. Variant rs1562939198 associates Disease lung carcinoma. Disease lung carcinoma associates Gene ADAMTS7. Variant rs397517138 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs397516895 associates Disease lung carcinoma. Variant rs380286 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and lung carcinoma. Given list is: LPP, TENM2, DMRT1, TERT, UCK2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048660.9435933}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1b14ad3afbeeef9c018a21a6163ab428/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1b14ad3afbeeef9c018a21a6163ab428/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1b14ad3afbeeef9c018a21a6163ab428/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1bdbd0575b22cbfc5bfad51a17b09489/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1bdbd0575b22cbfc5bfad51a17b09489/metadata.json new file mode 100644 index 0000000..1ab0e49 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1bdbd0575b22cbfc5bfad51a17b09489/metadata.json @@ -0,0 +1 @@ +{"duration": 4.554941415786743, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and autoimmune hepatitis. Given list is: SLC14A2, PRKAG2, HLA-DQA1, HLA-DQA1, PLG'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047709.202492}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1bdbd0575b22cbfc5bfad51a17b09489/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1bdbd0575b22cbfc5bfad51a17b09489/output.pkl Binary files differnew file mode 100644 index 0000000..756dbd6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1bdbd0575b22cbfc5bfad51a17b09489/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1c9db1589be91f200c89c73b93b93b70/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1c9db1589be91f200c89c73b93b93b70/metadata.json new file mode 100644 index 0000000..06d1bee --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1c9db1589be91f200c89c73b93b93b70/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6617648601531982, "input_args": {"instruction": "'Context: Variant rs10794501 associates Disease rheumatic heart disease. Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR3909 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Gene MIR205 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Gene MIR1299 associates Disease rheumatic heart disease. Disease rheumatic heart disease resembles Disease pharyngitis. Disease ontology identifier of rheumatic heart disease is DOID:0050827. Variant rs9266329 associates Disease oropharynx cancer. Disease oropharynx cancer associates Gene HLA-DQB1. Variant rs2523679 associates Disease oropharynx cancer. Variant rs189602139 associates Disease oropharynx cancer. Variant rs1229984 associates Disease oropharynx cancer. \\nQuestion: Out of the given list, which Gene is associated with rheumatic heart disease and oropharynx cancer. Given list is: PLA2G6, HLA-DQB1, IL23R, FAM13A, ADH1B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047877.7615366}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1c9db1589be91f200c89c73b93b93b70/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1c9db1589be91f200c89c73b93b93b70/output.pkl Binary files differnew file mode 100644 index 0000000..cb1e616 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1c9db1589be91f200c89c73b93b93b70/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1cd793d7d01e0a935b16fa437ec8f400/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1cd793d7d01e0a935b16fa437ec8f400/metadata.json new file mode 100644 index 0000000..fed5a39 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1cd793d7d01e0a935b16fa437ec8f400/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5846819877624512, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with autoimmune disease and atopic asthma. Given list is: rs62324212, rs10059133, rs149943, rs12931267, rs17156671'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049121.5801475}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1cd793d7d01e0a935b16fa437ec8f400/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1cd793d7d01e0a935b16fa437ec8f400/output.pkl Binary files differnew file mode 100644 index 0000000..81a3ca1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1cd793d7d01e0a935b16fa437ec8f400/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1d196ca87769a901a973426c92561366/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1d196ca87769a901a973426c92561366/metadata.json new file mode 100644 index 0000000..9178f4e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1d196ca87769a901a973426c92561366/metadata.json @@ -0,0 +1 @@ +{"duration": 2.643183946609497, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Takayasu's arteritis and herpes zoster. Given list is: HLA-B, STAT6, HLA-DQA1, HBB, CFH\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047700.0887964}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1d196ca87769a901a973426c92561366/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1d196ca87769a901a973426c92561366/output.pkl Binary files differnew file mode 100644 index 0000000..1a6036b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1d196ca87769a901a973426c92561366/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1e9badc95f9263fd64004f46cb242b59/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1e9badc95f9263fd64004f46cb242b59/metadata.json new file mode 100644 index 0000000..2901a87 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1e9badc95f9263fd64004f46cb242b59/metadata.json @@ -0,0 +1 @@ +{"duration": 0.66390061378479, "input_args": {"instruction": "\"Context: Disease Crohn's disease associates Gene IL18RAP. Disease Crohn's disease associates Gene IL1RL1. Disease Crohn's disease associates Gene IL10RA. Disease Crohn's disease associates Gene TNFSF15. Disease Crohn's disease associates Gene IL12B. Disease Crohn's disease associates Gene IL10. Disease Crohn's disease associates Gene IL18R1. Variant rs116392568 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL21. Variant rs1250550 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL2RA. Variant rs1250546 associates Disease Crohn's disease. Variant rs9525625 associates Disease Crohn's disease. Variant rs6503695 associates Disease Crohn's disease. Disease Crohn's disease associates Gene LPP. Disease Crohn's disease associates Gene IL27. Variant rs3766606 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs12663356 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL23R. Variant rs17695092 associates Disease Crohn's disease. Variant rs2006996 associates Disease Crohn's disease. Variant rs11681525 associates Disease Crohn's disease. Disease Crohn's disease associates Gene PUS10. Variant rs1250544 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs13333062 associates Disease Crohn's disease. Variant rs6651252 associates Disease Crohn's disease. Variant rs6738490 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs56167332 associates Disease Crohn's disease. Disease Crohn's disease associates Gene CD6. Variant rs6545946 associates Disease Crohn's disease. Variant rs6856616 associates Disease Crohn's disease. Variant rs1432296 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs6556412 associates Disease Crohn's disease. Disease Crohn's disease associates Gene SCAMP3. Variant rs4871611 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs5763767 associates Disease Crohn's disease. Variant rs4820425 associates Disease Crohn's disease. Gene MIR532 associates Disease Crohn's disease. Variant rs11581607 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs13126505 associates Disease Crohn's disease. Variant rs6716753 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Gene MIR362 associates Disease Crohn's disease. Variant rs395157 associates Disease Crohn's disease. Disease Crohn's disease associates Gene MEFV. Gene MIR361 associates Disease Crohn's disease. Disease Crohn's disease associates Gene TNFRSF6B. Variant rs516246 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs9567307 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs6908425 associates Disease Crohn's disease. Disease Crohn's disease associates Gene NFATC1. Variant rs504963 associates Disease Crohn's disease. Variant rs2266959 associates Disease Crohn's disease. Variant rs957100 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IFNGR2. Variant rs4957294 associates Disease Crohn's disease. Variant rs12946510 associates Disease Crohn's disease. Variant rs56116661 associates Disease Crohn's disease. Variant rs2413583 associates Disease Crohn's disease. Variant rs574835 associates Disease Crohn's disease. Variant rs3810936 associates Disease Crohn's disease. Variant rs3749172 associates Disease Crohn's disease. Disease ulcerative colitis associates Gene TNFSF15. Disease ulcerative colitis associates Gene IL10RA. Disease ulcerative colitis associates Gene IL10RB. Disease ulcerative colitis associates Gene IL10. Disease ulcerative colitis associates Gene CCL20. Disease ulcerative colitis associates Gene CFB. Disease ulcerative colitis associates Gene IL23R. Variant rs6920220 associates Disease ulcerative colitis. Variant rs1830610 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene NFKB1. Variant rs200349593 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TNFRSF6B. Disease ulcerative colitis associates Gene HLA-DQA1. Disease ulcerative colitis associates Gene WAS. Variant rs1893217 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL37. Variant rs11581607 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene PUS10. Variant rs9268853 associates Disease ulcerative colitis. Variant rs528766038 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL7R. Variant rs5771069 associates Disease ulcerative colitis. Variant rs3774959 associates Disease ulcerative colitis. Variant rs117506082 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL17REL. Variant rs661054 associates Disease ulcerative colitis. Variant rs4656958 associates Disease ulcerative colitis. Variant rs6667605 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene PROCR. Disease ulcerative colitis associates Gene MMP24OS. Variant rs3766606 associates Disease ulcerative colitis. Variant rs2413583 associates Disease ulcerative colitis. Variant rs12568930 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene GPR35. Variant rs11676348 associates Disease ulcerative colitis. Variant rs6871626 associates Disease ulcerative colitis. Variant rs4957048 associates Disease ulcerative colitis. Variant rs13048533 associates Disease ulcerative colitis. Variant rs9268877 associates Disease ulcerative colitis. Variant rs16940186 associates Disease ulcerative colitis. Variant rs4380874 associates Disease ulcerative colitis. Variant rs41291790 associates Disease ulcerative colitis. Variant rs3194051 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene CD6. Variant rs145568234 associates Disease ulcerative colitis. Gene MIR200C associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SLC39A11. Variant rs4409764 associates Disease ulcerative colitis. Variant rs17207986 associates Disease ulcerative colitis. Variant rs56167332 associates Disease ulcerative colitis. Variant rs13003464 associates Disease ulcerative colitis. Variant rs4246905 associates Disease ulcerative colitis. Variant rs501916 associates Disease ulcerative colitis. Variant rs9268923 associates Disease ulcerative colitis. Variant rs4722672 associates Disease ulcerative colitis. Variant rs1521186 associates Disease ulcerative colitis. Variant rs6911490 associates Disease ulcerative colitis. Variant rs6088765 associates Disease ulcerative colitis. Variant rs2201841 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TNRC18. Disease ulcerative colitis associates Gene SLC37A4. Variant rs2918392 associates Disease ulcerative colitis. Variant rs11739663 associates Disease ulcerative colitis. Variant rs35675666 associates Disease ulcerative colitis. Gene MIR146B associates Disease ulcerative colitis. Variant rs12149608 associates Disease ulcerative colitis. Variant rs12946510 associates Disease ulcerative colitis. Variant rs4845604 associates Disease ulcerative colitis. Variant rs6927022 associates Disease ulcerative colitis. Variant rs2816958 associates Disease ulcerative colitis. Variant rs11742570 associates Disease ulcerative colitis. Variant rs4817983 associates Disease ulcerative colitis. Variant rs10761659 associates Disease ulcerative colitis. Variant rs34236350 associates Disease ulcerative colitis. Variant rs9271366 associates Disease ulcerative colitis. \\nQuestion: Out of the given list, which Gene is associated with Crohn's disease and ulcerative colitis. Given list is: CAPN14, LPP, UMPS, RBFOX1, IL23R\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048248.1432061}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1e9badc95f9263fd64004f46cb242b59/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1e9badc95f9263fd64004f46cb242b59/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1e9badc95f9263fd64004f46cb242b59/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1eb27d3251e63caf61f94b0ed322436f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1eb27d3251e63caf61f94b0ed322436f/metadata.json new file mode 100644 index 0000000..c52e997 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1eb27d3251e63caf61f94b0ed322436f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8483874797821045, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with membranous glomerulonephritis and collagenous colitis. Given list is: HLA-DQA1, STAT4, ATXN2, GNE, RAD51B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989458.301896}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1eb27d3251e63caf61f94b0ed322436f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1eb27d3251e63caf61f94b0ed322436f/output.pkl Binary files differnew file mode 100644 index 0000000..9cd31dd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1eb27d3251e63caf61f94b0ed322436f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ecd2a5852db7a365b7ed486f8f01808/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ecd2a5852db7a365b7ed486f8f01808/metadata.json new file mode 100644 index 0000000..a597922 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ecd2a5852db7a365b7ed486f8f01808/metadata.json @@ -0,0 +1 @@ +{"duration": 2.4275989532470703, "input_args": {"instruction": "'Context: Disease pulmonary hypertension associates Gene HLA-DRB1. Disease pulmonary hypertension associates Gene HLA-DPA1. Disease pulmonary hypertension associates Gene HLA-B. Disease pulmonary hypertension associates Gene MYH6. Disease pulmonary hypertension associates Gene MUC5B. Disease pulmonary hypertension associates Gene MYH7. Disease pulmonary hypertension associates Gene KRT8. Disease pulmonary hypertension associates Gene COL1A1. Disease pulmonary hypertension associates Gene DEF6. Variant rs2217560 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene NOD2. Disease pulmonary hypertension associates Gene THSD1. Disease pulmonary hypertension associates Gene KRT18. Variant rs2856830 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene CCR6. Disease pulmonary hypertension associates Gene COL1A2. Disease pulmonary hypertension associates Gene MYBPC3. Disease pulmonary hypertension associates Gene PDSS1. Disease pulmonary hypertension associates Gene TNFSF11. Disease pulmonary hypertension associates Gene NKX2-5. Disease pulmonary hypertension associates Gene PGM1. Disease pulmonary hypertension associates Gene COX7B. Disease pulmonary hypertension associates Gene FBN1. Disease pulmonary hypertension associates Gene PAM16. Disease pulmonary hypertension associates Gene NKX2-1. Disease pulmonary hypertension associates Gene HSPG2. Disease pulmonary hypertension associates Gene SMARCAL1. Disease pulmonary hypertension associates Gene ABCC6. Disease pulmonary hypertension associates Gene MMACHC. Gene MIR503 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene ATP5F1A. Disease pulmonary hypertension associates Gene MPL. Disease pulmonary hypertension associates Gene COX1. Disease pulmonary hypertension associates Gene ND6. Disease pulmonary hypertension associates Gene GDF2. Variant rs10103692 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene COX6B1. Disease pulmonary hypertension associates Gene TBX4. Disease pulmonary hypertension associates Gene DLK1. Disease pulmonary hypertension associates Gene COX3. Variant rs71427857 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene MLX. Disease pulmonary hypertension associates Gene VAC14. Disease pulmonary hypertension associates Gene KMT2D. Disease pulmonary hypertension associates Gene ND5. Disease pulmonary hypertension associates Gene ACTC1. Disease pulmonary hypertension associates Gene ND4. Disease pulmonary hypertension associates Gene ALDH1A2. Disease pulmonary hypertension associates Gene ALMS1. Disease pulmonary hypertension associates Gene NDUFB10. Disease pulmonary hypertension associates Gene ND1. Disease pulmonary hypertension associates Gene LIPT1. Disease pulmonary hypertension associates Gene CITED2. Disease pulmonary hypertension associates Gene COX5A. Disease pulmonary hypertension associates Gene FGFR1. Disease pulmonary hypertension associates Gene CLCN7. Disease pulmonary hypertension associates Gene COX8A. Disease pulmonary hypertension associates Gene IL6ST. Disease pulmonary hypertension associates Gene ZNF699. Disease pulmonary hypertension associates Gene IL12B. Disease pulmonary hypertension associates Gene MYMK. Gene MIR424 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene SMAD9. Disease pulmonary hypertension associates Gene LMNA. Disease pulmonary hypertension associates Gene SPECC1L. Disease pulmonary hypertension associates Gene COLQ. Disease pulmonary hypertension associates Gene CCN2. Disease pulmonary hypertension associates Gene CACNA1D. Disease pulmonary hypertension associates Gene GATA6. Disease dermatomyositis associates Gene HLA-DPB1. Variant HLA_DPB1*17 associates Disease dermatomyositis. Disease dermatomyositis associates Gene HLA-DPA1. Variant rs7750458 associates Disease dermatomyositis. Gene MIR205 associates Disease dermatomyositis. Gene MIR206 associates Disease dermatomyositis. Gene MIR146A associates Disease dermatomyositis. Disease dermatomyositis presents Symptom Purpura, Thrombotic Thrombocytopenic. Disease dermatomyositis presents Symptom Purpura, Thrombocytopenic. Disease ontology identifier of dermatomyositis is DOID:10223. Disease dermatomyositis resembles Disease collagen disease. Disease polymyositis resembles Disease dermatomyositis. Disease dermatomyositis presents Symptom Edema. Disease dermatomyositis presents Symptom Purpura. Disease dermatomyositis resembles Disease connective tissue disease.. Disease dermatomyositis presents Symptom Skin Manifestations. Disease dermatomyositis resembles Disease pneumatosis cystoides intestinalis. Disease hemophagocytic lymphohistiocytosis resembles Disease dermatomyositis. Disease dermatomyositis presents Symptom Muscle Hypotonia. Disease dermatomyositis resembles Disease mixed connective tissue disease. Disease dermatomyositis presents Symptom Myotonia. \\nQuestion: Out of the given list, which Gene is associated with pulmonary hypertension and dermatomyositis. Given list is: CLPTM1L, C5, HLA-DPA1, AHR, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047890.7217112}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ecd2a5852db7a365b7ed486f8f01808/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ecd2a5852db7a365b7ed486f8f01808/output.pkl Binary files differnew file mode 100644 index 0000000..eb33eef --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ecd2a5852db7a365b7ed486f8f01808/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f30bb815f133fcf47917e202424b6b3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f30bb815f133fcf47917e202424b6b3/metadata.json new file mode 100644 index 0000000..d205b34 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f30bb815f133fcf47917e202424b6b3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5660319328308105, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with neurotic disorder and neuromyelitis optica. Given list is: STAT4, LACC1, TNXB, UMPS, SFRP4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989946.2596116}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f30bb815f133fcf47917e202424b6b3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f30bb815f133fcf47917e202424b6b3/output.pkl Binary files differnew file mode 100644 index 0000000..4d7d19e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f30bb815f133fcf47917e202424b6b3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f49c8acd3a260d04045fe33cc56a20c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f49c8acd3a260d04045fe33cc56a20c/metadata.json new file mode 100644 index 0000000..339ad4c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f49c8acd3a260d04045fe33cc56a20c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4506523609161377, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and idiopathic pulmonary fibrosis. Given list is: ATXN2, ERAP1, RBFOX1, NANOS1, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988542.335555}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f49c8acd3a260d04045fe33cc56a20c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f49c8acd3a260d04045fe33cc56a20c/output.pkl Binary files differnew file mode 100644 index 0000000..c27681c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f49c8acd3a260d04045fe33cc56a20c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f78356085f1868bded98f72281be917/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f78356085f1868bded98f72281be917/metadata.json new file mode 100644 index 0000000..eb6d91c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f78356085f1868bded98f72281be917/metadata.json @@ -0,0 +1 @@ +{"duration": 1.4074606895446777, "input_args": {"instruction": "'Context: Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene TLR4. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene TNFRSF13C. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene PTPN22. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene WAS. Disease vasculitis associates Gene SH2D1A. Disease vasculitis associates Gene IFNGR1. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene IL12A. Disease vasculitis associates Gene C4A. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene PNP. Disease vasculitis associates Gene TNFRSF1A. Disease vasculitis associates Gene SAA2. Disease ontology identifier of vasculitis is DOID:865. Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene C4B. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene TNFRSF13B. Disease autoimmune disease associates Gene TNFRSF13C. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene NLRP1. Disease autoimmune disease associates Gene C4A. Disease autoimmune disease associates Gene NFKB2. Disease autoimmune disease associates Gene NFKB1. Disease autoimmune disease associates Gene IL1B. Disease autoimmune disease associates Gene FCGR2B. Disease autoimmune disease associates Gene CARD9. Disease autoimmune disease associates Gene IL12B. Disease autoimmune disease associates Gene IL10RA. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene IL13. Disease autoimmune disease associates Gene IL1RN. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene TNFAIP3. Disease autoimmune disease associates Gene TNFSF4. Disease autoimmune disease associates Gene IL1A. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene IL6R. Disease autoimmune disease associates Gene DNASE1L3. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene ITGAM. Disease autoimmune disease associates Gene HLA-DRA. Disease autoimmune disease associates Gene NFKBIL1. Disease autoimmune disease associates Gene TLR5. Disease autoimmune disease associates Gene DNASE1. Disease autoimmune disease associates Gene CARD14. Disease autoimmune disease associates Gene IL4. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene SAA1. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene FCGR2A. Disease autoimmune disease associates Gene NLRP3. Disease autoimmune disease associates Gene IL7R. Disease autoimmune disease associates Gene IL10RB. Disease autoimmune disease associates Gene MEFV. Disease autoimmune disease associates Gene NOS3. Disease autoimmune disease associates Gene IL16. Disease autoimmune disease associates Gene CRP. \\nQuestion: Out of the given list, which Variant is associated with anti-neutrophil antibody associated vasculitis and autoimmune disease. Given list is: rs17293632, rs2487928, rs429358, rs6679677, rs6679677'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049116.5038939}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f78356085f1868bded98f72281be917/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f78356085f1868bded98f72281be917/output.pkl Binary files differnew file mode 100644 index 0000000..97aa399 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1f78356085f1868bded98f72281be917/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fd950e87465dfc6c13c1c2b14b04efc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fd950e87465dfc6c13c1c2b14b04efc/metadata.json new file mode 100644 index 0000000..3bef4e9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fd950e87465dfc6c13c1c2b14b04efc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6004555225372314, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and collagenous colitis. Given list is: FAM227B, HLA-B, HLA-DQA1, CDKAL1, PNPLA3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048184.241636}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fd950e87465dfc6c13c1c2b14b04efc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fd950e87465dfc6c13c1c2b14b04efc/output.pkl Binary files differnew file mode 100644 index 0000000..d609367 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fd950e87465dfc6c13c1c2b14b04efc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fe455d4ff34a0581fcb7c797fa26f68/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fe455d4ff34a0581fcb7c797fa26f68/metadata.json new file mode 100644 index 0000000..3b861a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fe455d4ff34a0581fcb7c797fa26f68/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5601520538330078, "input_args": {"instruction": "\"Context: Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene HLA-DQB2. Disease Takayasu's arteritis associates Gene HLA-DOB. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs9266745 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant rs117298325 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene ABHD16A. Variant rs12526858 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VWA7. Variant rs2844678 associates Disease Takayasu's arteritis. Variant rs2322599 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene RNF5. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Variant HLAB*1302 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs4410768 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRT4. Variant rs2836883 associates Disease Takayasu's arteritis. Variant rs1383258 associates Disease Takayasu's arteritis. Variant rs12980600 associates Disease Takayasu's arteritis. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and Takayasu's arteritis. Given list is: GTF2I, HLA-DQA1, HLA-B, CRTC1, RORA\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048301.4027684}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fe455d4ff34a0581fcb7c797fa26f68/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fe455d4ff34a0581fcb7c797fa26f68/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1fe455d4ff34a0581fcb7c797fa26f68/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ff695c6338e822ab531469d65e0fbc5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ff695c6338e822ab531469d65e0fbc5/metadata.json new file mode 100644 index 0000000..841b781 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ff695c6338e822ab531469d65e0fbc5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6291224956512451, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and diffuse large B-cell lymphoma. Given list is: HLA-B, CACNA1A, TERT, EPDR1, ATXN2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048713.8853168}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ff695c6338e822ab531469d65e0fbc5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ff695c6338e822ab531469d65e0fbc5/output.pkl Binary files differnew file mode 100644 index 0000000..5692c7a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/1ff695c6338e822ab531469d65e0fbc5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/200165cf1e01b5dd2562aee058ac9da1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/200165cf1e01b5dd2562aee058ac9da1/metadata.json new file mode 100644 index 0000000..4a62175 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/200165cf1e01b5dd2562aee058ac9da1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5332469940185547, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with androgenic alopecia and mature B-cell neoplasm. Given list is: TM6SF2, HLA-B, SLC14A2, PHGDH, TTLL5'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990186.5420692}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/200165cf1e01b5dd2562aee058ac9da1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/200165cf1e01b5dd2562aee058ac9da1/output.pkl Binary files differnew file mode 100644 index 0000000..a57ea87 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/200165cf1e01b5dd2562aee058ac9da1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20911824288b24f5507be7b5e1b09100/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20911824288b24f5507be7b5e1b09100/metadata.json new file mode 100644 index 0000000..f7e2227 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20911824288b24f5507be7b5e1b09100/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7437150478363037, "input_args": {"instruction": "'Context: Disease GM2 gangliosidosis associates Gene GM2A. Disease GM2 gangliosidosis associates Gene HEXA. Disease GM2 gangliosidosis associates Gene HEXB. Disease ontology identifier of GM2 gangliosidosis, AB variant is DOID:4795. Variant rs746766232 associates Disease GM1 gangliosidosis type 2. Variant rs7614776 associates Disease GM1 gangliosidosis type 2. Variant rs1553610382 associates Disease GM1 gangliosidosis type 2. Variant rs1575472038 associates Disease GM1 gangliosidosis type 2.. Variant rs754077128 associates Disease GM1 gangliosidosis type 2. Variant rs794729217 associates Disease GM1 gangliosidosis type 2. Variant rs397515614 associates Disease GM1 gangliosidosis type 2. Variant rs11552660 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs145823152 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs1005668285 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs150707660 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs760624454 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs139456115 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs761620958 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs555898820 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs146696295 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs4073889 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs146545933 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs146578303 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs368141783 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs891588656 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs560355552 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs781581192 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs1295961695 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs144668507 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs111836685 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs759068118 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs368133306 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs765328102 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs139321130 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs771150863 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs1437082537 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs377034676 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs148945152 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs148813816 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs951758262 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs555079079 associates Disease D-2-hydroxyglutaric aciduria 1. Variant rs576646391 associates Disease 3-methylglutaconic aciduria type 5. Variant rs142023670 associates Disease 3-methylglutaconic aciduria type 5. Variant rs145786060 associates Disease 3-methylglutaconic aciduria type 5. Variant rs367841424 associates Disease 3-methylglutaconic aciduria type 5. Variant rs1253268997 associates Disease 3-methylglutaconic aciduria type 5. Variant rs372756221 associates Disease 3-methylglutaconic aciduria type 5. Variant rs376891597 associates Disease 3-methylglutaconic aciduria type 5. Variant rs1057515676 associates Disease 3-methylglutaconic aciduria type 1.. Variant rs1057515675 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1057515677 associates Disease 3-methylglutaconic aciduria type 1. Variant rs143768042 associates Disease 3-methylglutaconic aciduria type 1. Variant rs146227896 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1219516037 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1587621572 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1050057219 associates Disease 3-methylglutaconic aciduria type 1. Variant rs148157596 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1827482942 associates Disease 3-methylglutaconic aciduria type 1. Variant rs121434636 associates Disease 3-methylglutaconic aciduria type 1. Variant rs530710210 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1482564472 associates Disease 3-methylglutaconic aciduria type 1. Variant rs141110052 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1826691653 associates Disease 3-methylglutaconic aciduria type 1. Variant rs377176126 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1554721818 associates Disease 3-methylglutaconic aciduria type 1. Variant rs746215620 associates Disease 3-methylglutaconic aciduria type 1. Variant rs863223911 associates Disease 3-methylglutaconic aciduria type 1. Variant rs759369259 associates Disease 3-methylglutaconic aciduria type 1. Variant rs141700491 associates Disease 3-methylglutaconic aciduria type 1. Variant rs1554688047 associates Disease 3-methylglutaconic aciduria type 1. \\nQuestion: Out of the given list, which Gene is associated with malaria and duodenal ulcer. Given list is: TP53, ABO, HLA-DPA1, ADGRV1, GNE'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988482.3065789}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20911824288b24f5507be7b5e1b09100/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20911824288b24f5507be7b5e1b09100/output.pkl Binary files differnew file mode 100644 index 0000000..bb8bd77 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20911824288b24f5507be7b5e1b09100/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20a0b9161fd0ae47672e168b79c12d4e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20a0b9161fd0ae47672e168b79c12d4e/metadata.json new file mode 100644 index 0000000..89a9a40 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20a0b9161fd0ae47672e168b79c12d4e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7788262367248535, "input_args": {"instruction": "'Context: Disease psoriatic arthritis associates Gene MFSD4B. Disease psoriatic arthritis associates Gene MRPS18B. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-F. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-C. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MUC22. Variant rs115645848 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Variant rs12188300 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL12B. Variant rs149997688 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Variant rs12044149 associates Disease psoriatic arthritis. Variant rs28724231 associates Disease psoriatic arthritis. Gene MIR15A associates Disease psoriatic arthritis. Variant rs76956521 associates Disease psoriatic arthritis. Disease myelodysplastic syndrome associates Gene HSPA9. Variant rs387906631 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS14. Disease myelodysplastic syndrome associates Gene PTPN11. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS26. Variant rs769053835 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS29. Disease myelodysplastic syndrome associates Gene RPS7. Variant rs12203592 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS10. Disease myelodysplastic syndrome associates Gene RPS27. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS17. Variant rs121913503 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS28. Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs121434596 associates Disease myelodysplastic syndrome. Variant rs78898975 associates Disease myelodysplastic syndrome. Variant rs752746786 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS20. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs11540652 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Variant rs1576745225 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS24. Disease myelodysplastic syndrome associates Gene FANCD2. Variant rs121913500 associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCC. Disease myelodysplastic syndrome associates Gene FANCL. Variant rs769081887 associates Disease myelodysplastic syndrome. Variant rs371769427 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCM. Disease myelodysplastic syndrome associates Gene RPS15A. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene DNAJC21. Disease myelodysplastic syndrome associates Gene FANCG. Disease myelodysplastic syndrome associates Gene FANCI. Disease myelodysplastic syndrome associates Gene FANCA. Variant rs121913499 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPA1. Disease myelodysplastic syndrome associates Gene FANCB. Variant rs121913237 associates Disease myelodysplastic syndrome. Variant rs267606870 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CEP57. Disease myelodysplastic syndrome associates Gene RPS19. Disease myelodysplastic syndrome associates Gene FANCE. Disease myelodysplastic syndrome associates Gene ERCC4. Disease myelodysplastic syndrome associates Gene RAF1. Disease myelodysplastic syndrome associates Gene PALB2. Variant rs147001633 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene MPL. Disease myelodysplastic syndrome associates Gene DKC1. \\nQuestion: Out of the given list, which Gene is associated with psoriatic arthritis and myelodysplastic syndrome. Given list is: EPDR1, HLA-B, SFRP4, PNPLA3, ARMS2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048748.9376895}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20a0b9161fd0ae47672e168b79c12d4e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20a0b9161fd0ae47672e168b79c12d4e/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20a0b9161fd0ae47672e168b79c12d4e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c70a28f49f91b5f4977dec026b0aee/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c70a28f49f91b5f4977dec026b0aee/metadata.json new file mode 100644 index 0000000..1b6fb66 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c70a28f49f91b5f4977dec026b0aee/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5983519554138184, "input_args": {"instruction": "'Context: Variant rs62642574 associates Disease age related macular degeneration. Variant rs76157638 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene FBLN5. Disease age related macular degeneration associates Gene APOE. Disease age related macular degeneration associates Gene ABCA4. Disease age related macular degeneration associates Gene NT5DC1. Disease age related macular degeneration associates Gene ASPM. Disease age related macular degeneration associates Gene NOTCH4. Disease age related macular degeneration associates Gene C2. Disease age related macular degeneration associates Gene TNFRSF10A. Disease age related macular degeneration associates Gene SYN3. Disease age related macular degeneration associates Gene C9. Disease age related macular degeneration associates Gene ERCC6. Disease age related macular degeneration associates Gene HERC2. Disease age related macular degeneration associates Gene ELOVL4. Disease age related macular degeneration associates Gene TLR4. Disease age related macular degeneration associates Gene FRK. Disease age related macular degeneration associates Gene C3. Disease age related macular degeneration associates Gene ARMS2. Disease age related macular degeneration associates Gene CX3CR1. Disease age related macular degeneration associates Gene CST3. Disease age related macular degeneration associates Gene BEST1. Disease age related macular degeneration associates Gene HMCN1. Disease age related macular degeneration associates Gene HTRA1. Disease age related macular degeneration associates Gene RAD51B. Disease age related macular degeneration associates Gene F13B. Disease age related macular degeneration associates Gene COL8A1. Disease age related macular degeneration associates Gene COL10A1. Disease age related macular degeneration associates Gene TGFBR1. Disease age related macular degeneration associates Gene TIMP3. Disease age related macular degeneration associates Gene CFB. Disease age related macular degeneration associates Gene VEGFA. Disease age related macular degeneration associates Gene CFH. Variant rs67538026 associates Disease Kuhnt-Junius degeneration. Variant rs11884770 associates Disease Kuhnt-Junius degeneration. Variant rs58978565 associates Disease Kuhnt-Junius degeneration. Variant rs8135665 associates Disease Kuhnt-Junius degeneration. Variant rs62247658 associates Disease Kuhnt-Junius degeneration. Variant rs570618 associates Disease Kuhnt-Junius degeneration. Variant rs9564692 associates Disease Kuhnt-Junius degeneration. Variant rs61985136 associates Disease Kuhnt-Junius degeneration. Variant rs5754227 associates Disease Kuhnt-Junius degeneration. Variant rs6565597 associates Disease Kuhnt-Junius degeneration. Variant rs61941274 associates Disease Kuhnt-Junius degeneration. Variant rs62358361 associates Disease Kuhnt-Junius degeneration. Variant rs147859257 associates Disease Kuhnt-Junius degeneration. Variant rs187328863 associates Disease Kuhnt-Junius degeneration. Variant rs2070895 associates Disease Kuhnt-Junius degeneration. Variant rs114092250 associates Disease Kuhnt-Junius degeneration. Variant rs114254831 associates Disease Kuhnt-Junius degeneration. Variant rs116503776 associates Disease Kuhnt-Junius degeneration. Variant rs5817082 associates Disease Kuhnt-Junius degeneration. \\nQuestion: Out of the given list, which Variant is associated with age related macular degeneration and Kuhnt-Junius degeneration. Given list is: rs7579899, rs3803662, rs76972608, rs10490924, rs16948876'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048929.2182183}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c70a28f49f91b5f4977dec026b0aee/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c70a28f49f91b5f4977dec026b0aee/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c70a28f49f91b5f4977dec026b0aee/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c7f6d96961452319783ca2f81c969d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c7f6d96961452319783ca2f81c969d/metadata.json new file mode 100644 index 0000000..370b953 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c7f6d96961452319783ca2f81c969d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6100785732269287, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung small cell carcinoma and opiate dependence. Given list is: CFH, CLPTM1L, TERT, FAT3, ADGRV1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989525.7015128}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c7f6d96961452319783ca2f81c969d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c7f6d96961452319783ca2f81c969d/output.pkl Binary files differnew file mode 100644 index 0000000..78b6cd8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/20c7f6d96961452319783ca2f81c969d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/21ae7e9ddc2b5009095757e4e74f47c0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/21ae7e9ddc2b5009095757e4e74f47c0/metadata.json new file mode 100644 index 0000000..6e2e627 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/21ae7e9ddc2b5009095757e4e74f47c0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7672510147094727, "input_args": {"instruction": "'Context: Disease myositis associates Gene STAT4. Disease myositis associates Gene IL10. Disease myositis associates Gene HLA-B. Disease myositis associates Gene TLR4. Disease myositis associates Gene IL12A. Disease myositis associates Gene STING1. Disease myositis associates Gene LSM11. Disease myositis associates Gene SPP1. Disease myositis associates Gene PSMB9. Variant rs115146037 associates Disease myositis. Disease myositis associates Gene PTPN22. Disease myositis associates Gene PSMB4. Disease myositis associates Gene FOXP3. Disease myositis associates Gene TNFRSF1A. Disease myositis associates Gene C4A. Disease myositis associates Gene PSTPIP1. Variant rs116088953 associates Disease myositis. Disease myositis associates Gene RNASEH2B. Variant rs115902351 associates Disease myositis. Disease myositis associates Gene TREX1. Disease myositis associates Gene DDX39B. Disease myositis associates Gene RNASEH2C. Disease myositis associates Gene RNASEH2A. Disease myositis associates Gene IL23R. Variant rs114388793 associates Disease myositis. Disease myositis associates Gene IFNGR1. Disease myositis associates Gene MATR3. Disease myositis associates Gene COX3. Variant rs3130614 associates Disease myositis. Disease myositis associates Gene LAMA2. Variant rs114042950 associates Disease myositis. Variant rs114771815 associates Disease myositis. Variant rs114050967 associates Disease myositis. Variant rs116662199 associates Disease myositis. Disease myositis associates Gene COX1. Disease myositis associates Gene CCR1. Disease myositis associates Gene ADAR. Disease myositis associates Gene ATP6V1G2. Disease myositis associates Gene CAV3. Variant rs114012716 associates Disease myositis. Disease myositis associates Gene PSMG2. Disease myositis associates Gene CAPN3. Variant B*08:01 associates Disease myositis. Disease myositis associates Gene MEFV. Variant rs188088967 associates Disease myositis. Gene MIR503 associates Disease systemic scleroderma. Variant rs8109496 associates Disease systemic scleroderma. Variant rs11642873 associates Disease systemic scleroderma. Variant rs4681851 associates Disease systemic scleroderma. Variant rs62478615 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene GSDMA. Disease systemic scleroderma associates Gene GSDMB. Disease systemic scleroderma associates Gene BLK. Variant rs3792783 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene DNASE1L3. Variant rs45471499 associates Disease systemic scleroderma. Variant rs4554699 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene STAT4. Gene MIR129-2 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene NFKB1. Variant rs9296015 associates Disease systemic scleroderma. Variant rs9275390 associates Disease systemic scleroderma. Variant rs3790566 associates Disease systemic scleroderma. Variant rs2305743 associates Disease systemic scleroderma. Variant rs36073657 associates Disease systemic scleroderma. Gene MIR129-1 associates Disease systemic scleroderma. Variant rs9884090 associates Disease systemic scleroderma. Variant rs76285340 associates Disease systemic scleroderma. Variant rs2409781 associates Disease systemic scleroderma. Variant rs17340351 associates Disease systemic scleroderma. Variant rs4317244 associates Disease systemic scleroderma. Variant rs35677470 associates Disease systemic scleroderma. Gene MIR202 associates Disease systemic scleroderma. Gene MIR92A2 associates Disease systemic scleroderma. Variant rs11893432 associates Disease systemic scleroderma. Variant rs1005714 associates Disease systemic scleroderma. Variant rs1378942 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene IL12RB1. Disease systemic scleroderma associates Gene TNPO3. Variant rs3894194 associates Disease systemic scleroderma. Gene MIR92A1 associates Disease systemic scleroderma. Variant rs1422673 associates Disease systemic scleroderma. Variant rs12534421 associates Disease systemic scleroderma. Variant rs10892299 associates Disease systemic scleroderma. Variant rs4731532 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene HLA-DRA. Variant rs589446 associates Disease systemic scleroderma. Variant rs3821236 associates Disease systemic scleroderma. Variant rs4076852 associates Disease systemic scleroderma. Gene MIR142 associates Disease systemic scleroderma. \\nQuestion: Out of the given list, which Gene is associated with myositis and systemic scleroderma. Given list is: BTNL2, DMRT1, STAT4, CLPTM1L, SLC2A9'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047777.8083718}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/21ae7e9ddc2b5009095757e4e74f47c0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/21ae7e9ddc2b5009095757e4e74f47c0/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/21ae7e9ddc2b5009095757e4e74f47c0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/220b18d920fc0f6e7bf501e2826ed55b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/220b18d920fc0f6e7bf501e2826ed55b/metadata.json new file mode 100644 index 0000000..f1bc49d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/220b18d920fc0f6e7bf501e2826ed55b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4737544059753418, "input_args": {"instruction": "'Context: Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene KRT16. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene PERP. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT14. Disease keratosis presents Symptom Deafness. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene KANK2. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene GJA1. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene GJB3. Disease keratosis localizes Anatomy mucosa of larynx. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene AQP5. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene GJB6. Disease keratosis associates Gene SASH1. Disease keratosis localizes Anatomy laryngeal vocal fold. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene SLURP1. Disease keratosis localizes Anatomy external ear. Disease keratosis associates Gene SMARCAD1. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene VPS33B. Disease keratosis resembles Disease auditory system disease. Disease squamous cell papilloma resembles Disease keratosis. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene CAST. Disease autosomal recessive nonsyndromic deafness 21 isa Disease autosomal recessive nonsyndromic deafness. \\nQuestion: Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and age-related hearing impairment. Given list is: rs1950829, rs13263709, rs1126809, rs34871267, rs2431108'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050481.2813375}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/220b18d920fc0f6e7bf501e2826ed55b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/220b18d920fc0f6e7bf501e2826ed55b/output.pkl Binary files differnew file mode 100644 index 0000000..149de20 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/220b18d920fc0f6e7bf501e2826ed55b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/227ea818278856104d105f625eeb2529/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/227ea818278856104d105f625eeb2529/metadata.json new file mode 100644 index 0000000..cfc4ac9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/227ea818278856104d105f625eeb2529/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5668272972106934, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Takayasu's arteritis and psoriasis. Given list is: ABCG2, HLA-B, CACNA1C, RGS14, PTPN22\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989714.2821069}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/227ea818278856104d105f625eeb2529/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/227ea818278856104d105f625eeb2529/output.pkl Binary files differnew file mode 100644 index 0000000..a363e3d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/227ea818278856104d105f625eeb2529/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/22f82f87c8e97af630396fe3b93ca81d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/22f82f87c8e97af630396fe3b93ca81d/metadata.json new file mode 100644 index 0000000..fe9f590 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/22f82f87c8e97af630396fe3b93ca81d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.43724679946899414, "input_args": {"instruction": "'Context: Variant rs1599507415 associates Disease membranoproliferative glomerulonephritis.. Disease membranoproliferative glomerulonephritis associates Gene C1QC. Disease membranoproliferative glomerulonephritis associates Gene C1QB. Disease membranoproliferative glomerulonephritis associates Gene C1QA. Disease membranoproliferative glomerulonephritis associates Gene CFHR2. Disease membranoproliferative glomerulonephritis associates Gene DNASE2. Disease membranoproliferative glomerulonephritis associates Gene LMNB2. Disease membranoproliferative glomerulonephritis associates Gene PGM3. Disease membranoproliferative glomerulonephritis associates Gene SLC37A4. Disease membranoproliferative glomerulonephritis associates Gene CFHR3. Disease membranoproliferative glomerulonephritis associates Gene CFHR5. Disease membranoproliferative glomerulonephritis associates Gene ZNFX1. Disease membranoproliferative glomerulonephritis associates Gene DGKE. Disease membranoproliferative glomerulonephritis associates Gene SOX18. Disease membranous glomerulonephritis associates Gene PSORS1C1. Disease membranous glomerulonephritis associates Gene PRRC2A. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene EGFL8. Disease membranous glomerulonephritis associates Gene PLA2R1. Disease membranous glomerulonephritis associates Gene FOXP3. Disease membranous glomerulonephritis associates Gene PRKCD. Variant rs1265159 associates Disease membranous glomerulonephritis. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs9267522 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene TCF19. Variant rs3134945 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene GPANK1. Variant rs2187668 associates Disease membranous glomerulonephritis. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene TSBP1. Variant rs230540 associates Disease membranous glomerulonephritis.. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs2233956 associates Disease membranous glomerulonephritis. Variant rs9314614; rs2738058; rs12716641 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene TGFB1. Disease IgA glomerulonephritis associates Gene PSMB8. Gene MIR877 associates Disease IgA glomerulonephritis. Variant rs6942325 associates Disease IgA glomerulonephritis. Gene MIR146A associates Disease IgA glomerulonephritis. Variant rs548169927 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene TNFSF12-TNFSF13. Variant rs9275596 associates Disease IgA glomerulonephritis. Variant rs6677604 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene MMP1. Disease IgA glomerulonephritis associates Gene CCDC97. Variant rs191495917 associates Disease IgA glomerulonephritis. Variant rs9314614 associates Disease IgA glomerulonephritis. Variant rs12716641 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene MPDU1. Variant rs56254331 associates Disease IgA glomerulonephritis. Variant rs2856717 associates Disease IgA glomerulonephritis. Variant rs9271082 associates Disease IgA glomerulonephritis. Variant rs2295119 associates Disease IgA glomerulonephritis. Gene MIR29A associates Disease IgA glomerulonephritis. Variant rs9266216 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene ACCS. Variant rs11574637 associates Disease IgA glomerulonephritis. Variant rs4227 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene PDPN. Variant rs1606888 associates Disease IgA glomerulonephritis. Variant rs3129721 associates Disease IgA glomerulonephritis. Variant rs2071543 associates Disease IgA glomerulonephritis. Variant rs291102 associates Disease IgA glomerulonephritis. Disease focal segmental glomerulosclerosis 9 associates Gene CRB2. Variant rs1221877694 associates Disease focal segmental glomerulosclerosis 9.. Variant rs879255252 associates Disease focal segmental glomerulosclerosis 9. Variant rs376152518 associates Disease focal segmental glomerulosclerosis 9. Variant rs147412276 associates Disease focal segmental glomerulosclerosis 9. Variant rs879255250 associates Disease focal segmental glomerulosclerosis 9. Variant rs1057519779 associates Disease renal carcinoma. Variant rs1057519778 associates Disease renal carcinoma. Variant rs121913246 associates Disease renal carcinoma. Variant rs121913243 associates Disease renal carcinoma. \\nQuestion: Out of the given list, which Gene is associated with membranous glomerulonephritis and cervix carcinoma. Given list is: PSCA, HLA-DQA1, KALRN, HLA-DQA1, HLA-DRB5'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988473.3665535}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/22f82f87c8e97af630396fe3b93ca81d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/22f82f87c8e97af630396fe3b93ca81d/output.pkl Binary files differnew file mode 100644 index 0000000..ee95d1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/22f82f87c8e97af630396fe3b93ca81d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/233859be1a6a4e61879e151a7f24a1e4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/233859be1a6a4e61879e151a7f24a1e4/metadata.json new file mode 100644 index 0000000..adec2d8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/233859be1a6a4e61879e151a7f24a1e4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.47452449798583984, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Hodgkin's lymphoma and Hodgkin's lymphoma, nodular sclerosis. Given list is: SHTN1, ERAP1, GATA3, XBP1, FTO\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988476.149591}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/233859be1a6a4e61879e151a7f24a1e4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/233859be1a6a4e61879e151a7f24a1e4/output.pkl Binary files differnew file mode 100644 index 0000000..ac52980 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/233859be1a6a4e61879e151a7f24a1e4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/237d37380bd4c9c7e59334639102c46a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/237d37380bd4c9c7e59334639102c46a/metadata.json new file mode 100644 index 0000000..4026a86 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/237d37380bd4c9c7e59334639102c46a/metadata.json @@ -0,0 +1 @@ +{"duration": 1.0065264701843262, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with age related macular degeneration and Kuhnt-Junius degeneration. Given list is: VAV3, UGT1A8, CFH, TP53, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047737.3795674}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/237d37380bd4c9c7e59334639102c46a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/237d37380bd4c9c7e59334639102c46a/output.pkl Binary files differnew file mode 100644 index 0000000..083527e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/237d37380bd4c9c7e59334639102c46a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/238a1f9e3c4e781279a9c4cfaf497e10/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/238a1f9e3c4e781279a9c4cfaf497e10/metadata.json new file mode 100644 index 0000000..b5e1666 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/238a1f9e3c4e781279a9c4cfaf497e10/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5468709468841553, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with squamous cell carcinoma and androgenic alopecia. Given list is: rs10455872, rs1011970, rs3814113, rs12203592, rs116264669'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050470.7728438}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/238a1f9e3c4e781279a9c4cfaf497e10/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/238a1f9e3c4e781279a9c4cfaf497e10/output.pkl Binary files differnew file mode 100644 index 0000000..3feb25c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/238a1f9e3c4e781279a9c4cfaf497e10/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/23cbfc323c2935052c58315271d2c510/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/23cbfc323c2935052c58315271d2c510/metadata.json new file mode 100644 index 0000000..ef7353a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/23cbfc323c2935052c58315271d2c510/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8515632152557373, "input_args": {"instruction": "'Context: Variant rs4692386 associates Disease inflammatory bowel disease. Variant rs4676410 associates Disease inflammatory bowel disease. Variant rs4946717 associates Disease inflammatory bowel disease. Variant rs4656958 associates Disease inflammatory bowel disease. Variant rs12654812 associates Disease inflammatory bowel disease. Variant rs145922845 associates Disease inflammatory bowel disease. Variant rs11677953 associates Disease inflammatory bowel disease. Variant rs4409764 associates Disease inflammatory bowel disease. Variant rs371608920 associates Disease inflammatory bowel disease. Variant rs11641016 associates Disease inflammatory bowel disease. Variant rs6708413 associates Disease inflammatory bowel disease. Variant rs4246215 associates Disease inflammatory bowel disease. Variant rs146951811 associates Disease inflammatory bowel disease. Variant rs8049439 associates Disease inflammatory bowel disease. Variant rs568879359 associates Disease inflammatory bowel disease. Variant rs2179070 associates Disease inflammatory bowel disease. Variant rs35164067 associates Disease inflammatory bowel disease. Variant rs11581607 associates Disease inflammatory bowel disease. Variant rs11743851 associates Disease inflammatory bowel disease. Variant rs11741861 associates Disease inflammatory bowel disease. Variant rs11681525 associates Disease inflammatory bowel disease. Variant rs5743626 associates Disease inflammatory bowel disease. Variant rs6863411 associates Disease inflammatory bowel disease. Variant rs4676408 associates Disease inflammatory bowel disease. Variant rs12585310 associates Disease inflammatory bowel disease. Variant rs67289879 associates Disease inflammatory bowel disease. Variant rs4246905 associates Disease inflammatory bowel disease. Variant rs4380874 associates Disease inflammatory bowel disease. Variant rs3766920 associates Disease inflammatory bowel disease. Variant rs5743289 associates Disease inflammatory bowel disease. Variant rs12946510 associates Disease inflammatory bowel disease. Variant rs2945412 associates Disease inflammatory bowel disease. Variant rs11614178 associates Disease inflammatory bowel disease. Variant rs3776414 associates Disease inflammatory bowel disease. Variant rs5763767 associates Disease inflammatory bowel disease. Variant rs4976646 associates Disease inflammatory bowel disease. Variant rs6556412 associates Disease inflammatory bowel disease. Variant rs12942547 associates Disease inflammatory bowel disease. Variant rs116392568 associates Disease inflammatory bowel disease. Variant rs34779708 associates Disease inflammatory bowel disease. Variant rs4845604 associates Disease inflammatory bowel disease. Variant rs35675666 associates Disease inflammatory bowel disease. Variant rs6740847 associates Disease inflammatory bowel disease. Variant rs142738614 associates Disease inflammatory bowel disease. Variant rs4256018 associates Disease inflammatory bowel disease. Variant rs746523858 associates Disease inflammatory bowel disease. Variant rs11768365 associates Disease inflammatory bowel disease. Variant rs3766606 associates Disease inflammatory bowel disease. Variant rs4795397 associates Disease inflammatory bowel disease. Variant rs6856616 associates Disease inflammatory bowel disease. Variant rs6871626 associates Disease inflammatory bowel disease. Variant rs4703855 associates Disease inflammatory bowel disease. Variant rs6592362 associates Disease inflammatory bowel disease. Variant rs11742570 associates Disease inflammatory bowel disease. Variant rs6142618 associates Disease inflammatory bowel disease. Variant rs139073251 associates Disease inflammatory bowel disease. Variant rs760677075 associates Disease inflammatory bowel disease. Variant rs886057005 associates Disease inflammatory bowel disease. Variant rs6568421 associates Disease inflammatory bowel disease. Variant rs11612508 associates Disease inflammatory bowel disease. Variant rs11672983 associates Disease inflammatory bowel disease. Variant rs34920465 associates Disease inflammatory bowel disease. Variant rs11554257 associates Disease inflammatory bowel disease. Variant rs376787667 associates Disease inflammatory bowel disease. Variant rs6586030 associates Disease inflammatory bowel disease. Variant rs1893217 associates Disease inflammatory bowel disease. Variant rs141219090 associates Disease inflammatory bowel disease. Variant rs5843596 associates Disease inflammatory bowel disease. Variant rs6058869 associates Disease inflammatory bowel disease. Variant rs550164520 associates Disease inflammatory bowel disease. Variant rs16953946 associates Disease inflammatory bowel disease. Variant rs4899554 associates Disease inflammatory bowel disease. Variant rs111456533 associates Disease inflammatory bowel disease. Variant rs780612967 associates Disease inflammatory bowel disease. Variant rs13407913 associates Disease inflammatory bowel disease. Variant rs4813003 associates Disease Kawasaki disease. Variant rs12037447 associates Disease Kawasaki disease. Variant rs1801274 associates Disease Kawasaki disease. Variant rs2857151 associates Disease Kawasaki disease. Variant rs146732504 associates Disease Kawasaki disease. Variant rs1883832 associates Disease Kawasaki disease. Variant rs35393613 associates Disease Kawasaki disease. Variant rs2849322 associates Disease Kawasaki disease. Variant rs2857602 associates Disease Kawasaki disease. Variant rs28493229 associates Disease Kawasaki disease.. Variant rs3129960 associates Disease Kawasaki disease. Variant rs1873212 associates Disease Kawasaki disease. Variant rs4774175 associates Disease Kawasaki disease. Variant rs1264516 associates Disease Kawasaki disease. Variant rs2254546 associates Disease Kawasaki disease. Variant rs6671847 associates Disease Kawasaki disease. Variant rs2720378 associates Disease Kawasaki disease. Variant rs3745213 associates Disease Kawasaki disease. Variant rs2071473 associates Disease Kawasaki disease. Variant rs1569723 associates Disease Kawasaki disease. Variant rs2130392 associates Disease Kawasaki disease. Variant rs1778477 associates Disease Kawasaki disease. \\nQuestion: Out of the given list, which Variant is associated with inflammatory bowel disease and Kawasaki disease. Given list is: rs3764147, rs1801274, rs3814113, rs479844, rs13141641'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048866.4853148}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/23cbfc323c2935052c58315271d2c510/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/23cbfc323c2935052c58315271d2c510/output.pkl Binary files differnew file mode 100644 index 0000000..d417436 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/23cbfc323c2935052c58315271d2c510/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/240cadcb843201dd24e0ad188ab8ffc1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/240cadcb843201dd24e0ad188ab8ffc1/metadata.json new file mode 100644 index 0000000..5fd5c1a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/240cadcb843201dd24e0ad188ab8ffc1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.770693302154541, "input_args": {"instruction": "'Context: Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant chr11:1102586 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs79684490 associates Disease idiopathic pulmonary fibrosis. Variant rs62025270 associates Disease idiopathic pulmonary fibrosis.. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene ATM. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene MRPS31. Disease myeloproliferative neoplasm associates Gene THPO.. Disease myeloproliferative neoplasm associates Gene MPL. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and myeloproliferative neoplasm. Given list is: STAT4, UMOD, ADGRV1, UMPS, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047673.4331505}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/240cadcb843201dd24e0ad188ab8ffc1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/240cadcb843201dd24e0ad188ab8ffc1/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/240cadcb843201dd24e0ad188ab8ffc1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/243e3e9faf07fbccd2bbe52076cd421c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/243e3e9faf07fbccd2bbe52076cd421c/metadata.json new file mode 100644 index 0000000..7230703 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/243e3e9faf07fbccd2bbe52076cd421c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5734553337097168, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myelodysplastic syndrome and allergic rhinitis. Given list is: ARMS2, CHEK2, HLA-B, BTN3A1, GSDMB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989830.2919989}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/243e3e9faf07fbccd2bbe52076cd421c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/243e3e9faf07fbccd2bbe52076cd421c/output.pkl Binary files differnew file mode 100644 index 0000000..286ba1f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/243e3e9faf07fbccd2bbe52076cd421c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24b7856fbc0e2d6eadd79bd39a2e7809/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24b7856fbc0e2d6eadd79bd39a2e7809/metadata.json new file mode 100644 index 0000000..8f954d9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24b7856fbc0e2d6eadd79bd39a2e7809/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6601996421813965, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with herpes zoster and diffuse large B-cell lymphoma. Given list is: HLA-B, ATXN2, SLC14A2, EYA2, POU5F1B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990017.007988}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24b7856fbc0e2d6eadd79bd39a2e7809/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24b7856fbc0e2d6eadd79bd39a2e7809/output.pkl Binary files differnew file mode 100644 index 0000000..33fa333 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24b7856fbc0e2d6eadd79bd39a2e7809/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24bc6dfa80ec28b6eabe1a8433723de1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24bc6dfa80ec28b6eabe1a8433723de1/metadata.json new file mode 100644 index 0000000..5a39e23 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24bc6dfa80ec28b6eabe1a8433723de1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7053582668304443, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and membranous glomerulonephritis. Given list is: STAT4, HLA-DQA1, TNFSF13, CFH, KITLG'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047681.2245705}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24bc6dfa80ec28b6eabe1a8433723de1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24bc6dfa80ec28b6eabe1a8433723de1/output.pkl Binary files differnew file mode 100644 index 0000000..51e3ad9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/24bc6dfa80ec28b6eabe1a8433723de1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/250c297838c0657d4a557177fefd1b2a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/250c297838c0657d4a557177fefd1b2a/metadata.json new file mode 100644 index 0000000..4c4e9e3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/250c297838c0657d4a557177fefd1b2a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7194869518280029, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Takayasu's arteritis and diffuse large B-cell lymphoma. Given list is: HLA-B, PLG, BRCA2, PNPLA3, PBX2\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989760.776145}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/250c297838c0657d4a557177fefd1b2a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/250c297838c0657d4a557177fefd1b2a/output.pkl Binary files differnew file mode 100644 index 0000000..31d6c16 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/250c297838c0657d4a557177fefd1b2a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2530b1c139dec290a3acc6f7afb27169/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2530b1c139dec290a3acc6f7afb27169/metadata.json new file mode 100644 index 0000000..6b0b8aa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2530b1c139dec290a3acc6f7afb27169/metadata.json @@ -0,0 +1 @@ +{"duration": 0.584503173828125, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and myelodysplastic syndrome. Given list is: TRAF3IP2, FADS1, SHTN1, ATXN2, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048255.8003502}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2530b1c139dec290a3acc6f7afb27169/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2530b1c139dec290a3acc6f7afb27169/output.pkl Binary files differnew file mode 100644 index 0000000..3a9b4c9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2530b1c139dec290a3acc6f7afb27169/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/259a67fd9aa544feda8d4a0120df3479/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/259a67fd9aa544feda8d4a0120df3479/metadata.json new file mode 100644 index 0000000..3578f34 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/259a67fd9aa544feda8d4a0120df3479/metadata.json @@ -0,0 +1 @@ +{"duration": 27.929099082946777, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with membranous glomerulonephritis and cutaneous lupus erythematosus. Given list is: ZFHX3, HLA-DQA1, EPDR1, CRTC1, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988469.786004}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/259a67fd9aa544feda8d4a0120df3479/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/259a67fd9aa544feda8d4a0120df3479/output.pkl Binary files differnew file mode 100644 index 0000000..ac3bbfc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/259a67fd9aa544feda8d4a0120df3479/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/25e02de2bde66f43477f90a2a2fac990/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/25e02de2bde66f43477f90a2a2fac990/metadata.json new file mode 100644 index 0000000..dafdbbd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/25e02de2bde66f43477f90a2a2fac990/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4610331058502197, "input_args": {"instruction": "'Context: Variant rs769834604 associates Disease nephrotic syndrome. Variant rs565501407 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Variant rs267606919 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PLCE1. Variant rs145976111 associates Disease nephrotic syndrome. Variant rs769259446 associates Disease nephrotic syndrome. Variant rs786204632 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP85. Variant rs2079386835 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PTPRO. Variant rs1569495819 associates Disease nephrotic syndrome. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs886058682 associates Disease nephrotic syndrome. Variant rs2063103741 associates Disease nephrotic syndrome. Variant rs886058681 associates Disease nephrotic syndrome. Variant rs886058680 associates Disease nephrotic syndrome. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs776859868 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ANLN. Disease nephrotic syndrome associates Gene NUP160. Variant rs769133638 associates Disease nephrotic syndrome. Variant rs1800492946 associates Disease nephrotic syndrome. Variant rs2045467851 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NPHP1. Variant rs886058679 associates Disease nephrotic syndrome. Variant rs2045394381 associates Disease nephrotic syndrome. Variant rs759043857 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A4. Disease nephrotic syndrome associates Gene NPHS1. Variant rs764181464 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene HLA-DQB1. Variant rs140511594 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A3. Variant rs959473971 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP205. Disease nephrotic syndrome associates Gene ZAP70. Variant rs2016645859 associates Disease nephrotic syndrome. Variant rs376983109 associates Disease nephrotic syndrome. Variant rs149560153 associates Disease nephrotic syndrome. Variant rs2068656107 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A5. Variant rs1223251037 associates Disease nephrotic syndrome. Variant rs781347673 associates Disease nephrotic syndrome. Variant rs118203956 associates Disease nephrotic syndrome. Variant rs145623004 associates Disease nephrotic syndrome. Variant rs114203578 associates Disease nephrotic syndrome. Variant rs529211517 associates Disease nephrotic syndrome. Variant rs766482429 associates Disease nephrotic syndrome. Variant rs776254762 associates Disease nephrotic syndrome. Variant rs4642516 associates Disease nephrotic syndrome. Variant rs9273542 associates Disease nephrotic syndrome. Variant rs145473779 associates Disease nephrotic syndrome. Variant rs1601356283 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Variant rs2066736944 associates Disease nephrotic syndrome. Variant rs886047492 associates Disease nephrotic syndrome. Variant rs371914169 associates Disease nephrotic syndrome. Variant rs369363545 associates Disease nephrotic syndrome. Variant rs751611955 associates Disease nephrotic syndrome. Variant rs534522842 associates Disease nephrotic syndrome. Variant rs369558225 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ITGA3. Variant rs780428043 associates Disease nephrotic syndrome. Variant rs370860586 associates Disease nephrotic syndrome. Variant rs1054215531 associates Disease nephrotic syndrome. Variant rs570583897 associates Disease nephrotic syndrome. Variant rs9269202 associates Disease nephrotic syndrome. Variant rs2051495579 associates Disease nephrotic syndrome. Variant rs1191455921 associates Disease nephrotic syndrome. Variant rs2059360185 associates Disease nephrotic syndrome. Variant rs762704370 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene APOA1. Variant HLA-DQB1*03 associates Disease nephrotic syndrome. Disease oropharynx cancer associates Gene HLA-DQB1. Variant rs189602139 associates Disease oropharynx cancer. Variant rs28418426 associates Disease oropharynx cancer. Variant rs1229984 associates Disease oropharynx cancer. Variant rs35189640 associates Disease oropharynx cancer. \\nQuestion: Out of the given list, which Gene is associated with nephrotic syndrome and oropharynx cancer. Given list is: PRKAG2, SYT14, VAV3, HLA-DQB1, PNPLA3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990133.7045531}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/25e02de2bde66f43477f90a2a2fac990/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/25e02de2bde66f43477f90a2a2fac990/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/25e02de2bde66f43477f90a2a2fac990/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/26ebe35c25a39bf5b5127d28a5f9b339/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/26ebe35c25a39bf5b5127d28a5f9b339/metadata.json new file mode 100644 index 0000000..783fac3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/26ebe35c25a39bf5b5127d28a5f9b339/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5406789779663086, "input_args": {"instruction": "'Context: Variant rs876660821 associates Disease lung small cell carcinoma. Variant rs876658468 associates Disease lung small cell carcinoma. Variant rs1057520001 associates Disease lung small cell carcinoma. Variant rs1057520005 associates Disease lung small cell carcinoma. Variant rs1057520003 associates Disease lung small cell carcinoma. Variant rs1057520006 associates Disease lung small cell carcinoma. Variant rs864622237 associates Disease lung small cell carcinoma. Variant rs1057519985 associates Disease lung small cell carcinoma. Variant rs1057519989 associates Disease lung small cell carcinoma. Variant rs876660754 associates Disease lung small cell carcinoma. Variant rs483352697 associates Disease lung small cell carcinoma. Variant rs1057519747 associates Disease lung small cell carcinoma. Variant rs121913295 associates Disease lung small cell carcinoma. Variant rs587782329 associates Disease lung small cell carcinoma. Variant rs1057519990 associates Disease lung small cell carcinoma. Variant rs1057519879 associates Disease lung small cell carcinoma. Variant rs1057519927 associates Disease lung small cell carcinoma. Variant rs985033810 associates Disease lung small cell carcinoma. Variant rs1057519877 associates Disease lung small cell carcinoma. Variant rs55853698 associates Disease lung small cell carcinoma. Gene MIR29B1 associates Disease lung small cell carcinoma. Variant rs121913274 associates Disease lung small cell carcinoma. Gene MIR34B associates Disease lung small cell carcinoma. Variant rs116427960 associates Disease lung small cell carcinoma. Gene MIR29B2 associates Disease lung small cell carcinoma. Variant rs121913275 associates Disease lung small cell carcinoma. Variant rs1057519991 associates Disease lung small cell carcinoma. Variant rs121913343 associates Disease lung small cell carcinoma. Variant rs121913297 associates Disease lung small cell carcinoma. Gene MIR34C associates Disease lung small cell carcinoma. Variant rs121909229 associates Disease lung small cell carcinoma. Variant rs121913273 associates Disease lung small cell carcinoma. Variant rs886039484 associates Disease lung small cell carcinoma. Variant rs3813565 associates Disease lung small cell carcinoma. Gene MIR34A associates Disease lung small cell carcinoma. Gene MIR125B2 associates Disease lung small cell carcinoma. Variant rs587782082 associates Disease lung small cell carcinoma. Gene MIR590 associates Disease cervix carcinoma. Gene MIR106B associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ADGRV1. Disease cervix carcinoma associates Gene EXOC1. Variant rs59661306 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Gene MIR27B associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene LTA. Gene MIR155 associates Disease cervix carcinoma. Gene MIR135B associates Disease cervix carcinoma. Gene MIR34A associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Gene MIR139 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Gene MIR26B associates Disease cervix carcinoma. Gene MIR4262 associates Disease cervix carcinoma. Gene MIR361 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-G. Disease cervix carcinoma associates Gene TUBB. Gene MIR381 associates Disease cervix carcinoma. Gene MIR25 associates Disease cervix carcinoma. Gene MIR491 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Gene MIR503 associates Disease cervix carcinoma. Variant rs3131631 associates Disease cervix carcinoma. Gene MIR494 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Gene MIR346 associates Disease cervix carcinoma. Gene MIR429 associates Disease cervix carcinoma. Gene MIR362 associates Disease cervix carcinoma. Gene MIR107 associates Disease cervix carcinoma. Gene MIR497 associates Disease cervix carcinoma. Gene MIR31 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Gene MIR145 associates Disease cervix carcinoma. Gene MIR502 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Gene MIR146A associates Disease cervix carcinoma. Variant rs3130218 associates Disease cervix carcinoma. \\nQuestion: Out of the given list, which Gene is associated with lung small cell carcinoma and cervix carcinoma. Given list is: TERT, ADGRV1, PHGDH, CACNA1D, TFAP2B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989528.0341616}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/26ebe35c25a39bf5b5127d28a5f9b339/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/26ebe35c25a39bf5b5127d28a5f9b339/output.pkl Binary files differnew file mode 100644 index 0000000..6b803af --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/26ebe35c25a39bf5b5127d28a5f9b339/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27568ea8ef32248c461d982af13c0489/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27568ea8ef32248c461d982af13c0489/metadata.json new file mode 100644 index 0000000..7b98313 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27568ea8ef32248c461d982af13c0489/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5876424312591553, "input_args": {"instruction": "'Context: Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene HLA-C. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs76956521 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs149997688 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Variant rs1610601 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene STAT2. Disease psoriatic arthritis associates Gene MFSD4B. Disease psoriatic arthritis associates Gene IL23R. Variant rs458017 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TRAF3IP2. Variant rs12188300 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Disease psoriasis associates Gene HLA-B. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DQB1. Variant rs9366778 x rs4959062 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs2844624 x rs2523619 associates Disease psoriasis. Variant rs6929464 x rs1265112 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs4358666 x rs9468992 associates Disease psoriasis. Variant rs4358666 x rs6916062 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs6931633 x rs2853935 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DRB1. Variant rs1265079 x rs4358666 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs1265067 x rs4358666 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant rs142903734 associates Disease psoriasis. Variant rs12527188 x rs2853961 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant rs1265114 x rs4358666 associates Disease psoriasis. Variant rs4358666 x rs10223568 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs465969 associates Disease psoriasis. Variant rs6677595 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs6929434 x rs9380238 associates Disease psoriasis. Variant rs2844603 x rs9468932 associates Disease psoriasis. Variant rs6911408 x rs9468932 associates Disease psoriasis. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant rs4248149 x rs9380237 associates Disease psoriasis. Variant rs13203895 x rs4418214 associates Disease psoriasis. Variant rs4795067 associates Disease psoriasis. Variant rs1960278 x rs4947314 associates Disease psoriasis. Variant rs61871342 associates Disease psoriasis. Variant rs16898629 x rs6913137 associates Disease psoriasis. Variant rs1265112 x rs4358666 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant rs62149416 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant rs746647 x rs4358666 associates Disease psoriasis. Variant rs1265079 x rs34100370 associates Disease psoriasis. Variant rs12564022 associates Disease psoriasis. Variant rs9264602 x rs9468914 associates Disease psoriasis. Variant rs6931633 x rs28575156 associates Disease psoriasis. Variant rs17728338 x rs13203895 associates Disease psoriasis. Variant rs1265114 x rs34100370 associates Disease psoriasis. Variant rs12586317 associates Disease psoriasis. Variant chr12: 56741228 associates Disease psoriasis. Variant rs59827721 associates Disease psoriasis. Variant rs45533135 x rs9267464 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs6929464 x rs1639110 associates Disease psoriasis. Variant rs9504361 associates Disease psoriasis. Variant rs2517985 x rs4358666 associates Disease psoriasis. Variant rs887468 x rs9468932 associates Disease psoriasis. Variant rs13202464 x rs9267677 associates Disease psoriasis. Variant rs28894086 x rs1265078 associates Disease psoriasis. Variant rs12602912 associates Disease psoriasis. Variant rs2201841 associates Disease psoriasis. Variant rs12046909 associates Disease psoriasis. Variant rs9487605 associates Disease psoriasis. Variant rs1265079 x rs4624908 associates Disease psoriasis. Variant rs76956521 x rs13191519 associates Disease psoriasis. Variant rs12191877 x rs10848821 associates Disease psoriasis. Variant rs1265112 x rs34100370 associates Disease psoriasis. Variant rs130069 x rs9267673 associates Disease psoriasis. Variant rs2524052 x rs4947314 associates Disease psoriasis. Variant rs6933647 x rs2524096 associates Disease psoriasis. \\nQuestion: Out of the given list, which Gene is associated with psoriatic arthritis and psoriasis. Given list is: HLA-B, DAB2IP, TYR, FTO, FAT3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048727.9609637}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27568ea8ef32248c461d982af13c0489/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27568ea8ef32248c461d982af13c0489/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27568ea8ef32248c461d982af13c0489/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2769f104715aa74817604be2755137d3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2769f104715aa74817604be2755137d3/metadata.json new file mode 100644 index 0000000..d27a99c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2769f104715aa74817604be2755137d3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5346927642822266, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oropharynx cancer and autoimmune hepatitis. Given list is: HLA-DQB1, TNXB, FBN1, C9, BTN3A1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990065.6865587}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2769f104715aa74817604be2755137d3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2769f104715aa74817604be2755137d3/output.pkl Binary files differnew file mode 100644 index 0000000..b9d7be1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2769f104715aa74817604be2755137d3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27c6335a618aae401cd19eabeedbb464/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27c6335a618aae401cd19eabeedbb464/metadata.json new file mode 100644 index 0000000..8ebf8c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27c6335a618aae401cd19eabeedbb464/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5331993103027344, "input_args": {"instruction": "'Context: Disease idiopathic pulmonary fibrosis associates Gene TERT. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Disease idiopathic pulmonary fibrosis associates Gene STN1. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Disease idiopathic pulmonary fibrosis associates Gene TINF2. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs62025270 associates Disease idiopathic pulmonary fibrosis.. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs74614704 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Gene MIR142 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs16991615 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TCF7L2. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs3760982 associates Disease estrogen-receptor negative breast cancer. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs11076805 associates Disease estrogen-receptor negative breast cancer. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Variant rs35840638 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene PEX14. Disease estrogen-receptor negative breast cancer associates Gene FTO. Variant rs16857609 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene MRTFA. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs1637365 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs12710696 associates Disease estrogen-receptor negative breast cancer.. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs371350410 associates Disease breast cancer. Variant rs1601985311 associates Disease breast cancer. Variant rs370976710 associates Disease breast cancer. Disease breast cancer associates Gene TERT. Variant rs45551636 associates Disease breast cancer. Variant rs369561166 associates Disease breast cancer. Variant rs371614039 associates Disease breast cancer. Variant rs137853011 associates Disease breast cancer. Variant rs397508006 associates Disease breast cancer. Variant rs142063461 associates Disease breast cancer. Variant rs137853009 associates Disease breast cancer. Variant rs1304634005 associates Disease breast cancer. Variant rs377149139 associates Disease breast cancer. Disease breast cancer associates Gene TERF2IP. Variant rs397508051 associates Disease breast cancer. Variant rs139612775 associates Disease breast cancer. Variant rs376313955 associates Disease breast cancer. Variant rs1567808616 associates Disease breast cancer. Variant rs539960851 associates Disease breast cancer. Variant rs1131690820 associates Disease breast cancer. Variant rs397508045 associates Disease breast cancer. Variant rs137853007 associates Disease breast cancer. Variant rs397508867 associates Disease breast cancer. Variant rs141163928 associates Disease breast cancer. Variant rs1694983227 associates Disease breast cancer. Variant rs1966967065 associates Disease breast cancer. Variant rs12721593 associates Disease breast cancer. Variant rs386134270 associates Disease breast cancer. Variant rs200381392 associates Disease breast cancer. Variant rs536282050 associates Disease breast cancer. Variant rs200310662 associates Disease breast cancer. Variant rs142763740 associates Disease breast cancer. Variant rs139438201 associates Disease breast cancer. Variant rs376102028 associates Disease breast cancer. Variant rs1218108009 associates Disease breast cancer. Variant rs554012110 associates Disease breast cancer. Variant rs397508874 associates Disease breast cancer. Variant rs1399574459 associates Disease breast cancer. Variant rs121913469 associates Disease breast cancer. Disease breast cancer associates Gene MEFV. Variant rs140856217 associates Disease breast cancer. Variant rs397508979 associates Disease breast cancer. Variant rs35236080 associates Disease breast cancer. Variant rs276174853 associates Disease breast cancer. Variant rs531398630 associates Disease breast cancer. Variant rs145068586 associates Disease breast cancer. Variant rs276174856 associates Disease breast cancer. Variant rs59004709 associates Disease breast cancer. Variant rs1569104011 associates Disease breast cancer. Variant rs140566004 associates Disease breast cancer. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and estrogen-receptor negative breast cancer. Given list is: TERT, TNFSF15, NTM, IGF2BP2, STN1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989584.3075473}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27c6335a618aae401cd19eabeedbb464/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27c6335a618aae401cd19eabeedbb464/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/27c6335a618aae401cd19eabeedbb464/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2800357867134cbcd36dab81ca38d32b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2800357867134cbcd36dab81ca38d32b/metadata.json new file mode 100644 index 0000000..d18de53 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2800357867134cbcd36dab81ca38d32b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6934206485748291, "input_args": {"instruction": "'Context: Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene IL10. Variant rs541558502 associates Disease herpes zoster. Variant rs142765674 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Disease herpes zoster associates Gene POLR3C. Variant rs537841689 associates Disease herpes zoster.. Disease herpes zoster associates Gene POLR3A. Variant rs147482218 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT1. Variant rs117171752 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Variant rs75640364 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease herpes zoster associates Gene STAT3. Variant rs2574974 associates Disease herpes zoster. Disease herpes zoster associates Gene LRRC32. Variant rs765885335 associates Disease herpes zoster. Disease ontology identifier of herpes zoster is DOID:8536. Disease amyotrophic neuralgia resembles Disease herpes zoster. Disease herpes zoster presents Symptom Hyperesthesia. Disease facial nerve disease resembles Disease herpes zoster. Disease cranial nerve disease resembles Disease herpes zoster. Disease herpes zoster isa Disease nervous system disease. Disease herpes zoster presents Symptom Oral Manifestations. Disease facial dermatosis resembles Disease herpes zoster. Disease central nervous system vasculitis resembles Disease herpes zoster. Compound Mycophenolate mofetil contraindicates Disease herpes zoster. Disease herpes simplex virus keratitis resembles Disease herpes zoster. Disease glossopharyngeal motor neuropathy resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy central nervous system. Compound Mycophenolic acid contraindicates Disease herpes zoster. Disease glossopharyngeal neuralgia resembles Disease herpes zoster. Disease myelitis resembles Disease herpes zoster. Disease Guillain-Barre syndrome resembles Disease herpes zoster. Disease myoclonic cerebellar dyssynergia resembles Disease herpes zoster. Disease Vagus nerve disease resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal nerve. Disease herpes zoster localizes Anatomy skin of body. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. \\nQuestion: Out of the given list, which Gene is associated with herpes zoster and diffuse large B-cell lymphoma. Given list is: HLA-B, ATXN2, SLC14A2, EYA2, POU5F1B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990018.0983095}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2800357867134cbcd36dab81ca38d32b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2800357867134cbcd36dab81ca38d32b/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2800357867134cbcd36dab81ca38d32b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/28076a9615e8cd9ed1fa16e9dc7b135e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/28076a9615e8cd9ed1fa16e9dc7b135e/metadata.json new file mode 100644 index 0000000..93e80d3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/28076a9615e8cd9ed1fa16e9dc7b135e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7245159149169922, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with herpes zoster and allergic rhinitis. Given list is: HLA-B, HLA-B, IGF2BP2, CLPTM1L, CACNA2D1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990015.2516053}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/28076a9615e8cd9ed1fa16e9dc7b135e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/28076a9615e8cd9ed1fa16e9dc7b135e/output.pkl Binary files differnew file mode 100644 index 0000000..2dbbb15 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/28076a9615e8cd9ed1fa16e9dc7b135e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2902a80d8f84b16474ffb813a5b325b7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2902a80d8f84b16474ffb813a5b325b7/metadata.json new file mode 100644 index 0000000..90d2389 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2902a80d8f84b16474ffb813a5b325b7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.41931867599487305, "input_args": {"instruction": "'Context: Variant rs2294008 associates Disease atrophic gastritis.. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene DEF6. Disease atrophic gastritis associates Gene IL1RN. Disease atrophic gastritis associates Gene IL1B. Disease atrophic gastritis associates Gene CTLA4. Disease atrophic gastritis associates Gene NFKB1. Disease ontology identifier of atrophic gastritis is DOID:8929. Disease atrophic gastritis associates Gene IFIH1. Compound 3-(4-Amino-2-methyl-pyrimidin-5-ylmethyl)-5-(2-hydroxy-ethyl)-4-methyl-thiazol-3-ium contraindicates Disease atrophic gastritis. Disease atrophic gastritis associates Gene KRAS. Gene MIR155 associates Disease atrophic gastritis. Variant rs505922 associates Disease duodenal ulcer. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer associates Gene SYK. Compound CID 16685690 treats Disease duodenal ulcer. Compound 4-Aminosalicylic acid contraindicates Disease duodenal ulcer. Disease duodenal ulcer associates Gene PLG. Disease ontology identifier of duodenal ulcer is DOID:1724. Compound Rabeprazole treats Disease duodenal ulcer. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer presents Symptom Asthenia. \\nQuestion: Out of the given list, which Variant is associated with atrophic gastritis and duodenal ulcer. Given list is: rs4459895, rs12203592, rs9275260, rs12524487, rs2294008'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048990.616436}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2902a80d8f84b16474ffb813a5b325b7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2902a80d8f84b16474ffb813a5b325b7/output.pkl Binary files differnew file mode 100644 index 0000000..407b953 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2902a80d8f84b16474ffb813a5b325b7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/291bbb09496018273bef3bf872c18f86/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/291bbb09496018273bef3bf872c18f86/metadata.json new file mode 100644 index 0000000..2ce2cd4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/291bbb09496018273bef3bf872c18f86/metadata.json @@ -0,0 +1 @@ +{"duration": 1.100879430770874, "input_args": {"instruction": "'Context: Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT16. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene KRT14. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene MBTPS2. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene SMARCAD1. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene GJB3. Disease epidermodysplasia verruciformis resembles Disease keratosis. Disease keratosis associates Gene ATP2A2. Disease keratosis presents Symptom Erythema. Disease keratosis associates Gene CAST. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene TAT. Disease keratosis associates Gene PERP. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene KANK2. Disease keratosis associates Gene VPS33B. Disease keratosis presents Symptom Skin Manifestations. Disease keratosis associates Gene GJA1. Disease keratosis resembles Disease acrodermatitis. Disease nonepidermolytic palmoplantar keratoderma resembles Disease keratosis. Disease acrokeratosis verruciformis isa Disease keratosis. Disease keratosis associates Gene SNAP29. Disease erythrokeratodermia variabilis resembles Disease keratosis. Disease keratosis presents Symptom Oral Manifestations. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of the skin. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of the skin. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis associates Gene RAC2. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of blood and blood-forming tissues. Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene TNFRSF13C. Disease vasculitis associates Gene PRKCD. Disease vasculitis associates Gene TLR4. Disease vasculitis associates Gene KLRC4. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene CCR1. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene P4HA2. Disease vasculitis associates Gene IL12RB1. Disease vasculitis associates Gene UBAC2. Disease vasculitis associates Gene SYK. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene IL12A. Disease vasculitis associates Gene MVK. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene MYD88. \\nQuestion: Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and anti-neutrophil antibody associated vasculitis. Given list is: rs6679677, rs12187903, rs1333047, rs11585651, rs55730499'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049053.100616}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/291bbb09496018273bef3bf872c18f86/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/291bbb09496018273bef3bf872c18f86/output.pkl Binary files differnew file mode 100644 index 0000000..2c25235 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/291bbb09496018273bef3bf872c18f86/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29327e978ec0c117fc901790b1f6d950/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29327e978ec0c117fc901790b1f6d950/metadata.json new file mode 100644 index 0000000..353b418 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29327e978ec0c117fc901790b1f6d950/metadata.json @@ -0,0 +1 @@ +{"duration": 3.487687826156616, "input_args": {"instruction": "'Context: Variant rs6996585 associates Disease differentiated thyroid gland carcinoma. Variant rs11693806 associates Disease differentiated thyroid gland carcinoma. Variant rs12990503 associates Disease differentiated thyroid gland carcinoma. Disease thyroid gland papillary carcinoma associates Gene NKX2-1. Variant rs6996585 associates Disease thyroid gland papillary carcinoma. Gene MIR135B associates Disease thyroid gland papillary carcinoma. Gene MIR551B associates Disease thyroid gland papillary carcinoma. Gene MIR4728 associates Disease thyroid gland papillary carcinoma. Variant rs148335539 associates Disease thyroid gland papillary carcinoma. Variant rs12990503 associates Disease thyroid gland papillary carcinoma. Gene MIR1271 associates Disease thyroid gland papillary carcinoma. Gene MIR595 associates Disease thyroid gland papillary carcinoma. Variant rs201958469 associates Disease thyroid gland papillary carcinoma. Gene MIR7-2 associates Disease thyroid gland papillary carcinoma. Gene MIR369 associates Disease thyroid gland papillary carcinoma. Variant rs9858271 associates Disease thyroid gland papillary carcinoma. Gene MIR144 associates Disease thyroid gland papillary carcinoma. Gene MIR204 associates Disease thyroid gland papillary carcinoma. Gene MIR31 associates Disease thyroid gland papillary carcinoma. Gene MIR623 associates Disease thyroid gland papillary carcinoma. Gene MIR141 associates Disease thyroid gland papillary carcinoma. Gene MIR99B associates Disease thyroid gland papillary carcinoma. Disease thyroid gland papillary carcinoma associates Gene NRG1. Gene MIR34C associates Disease thyroid gland papillary carcinoma. \\nQuestion: Out of the given list, which Gene is associated with differentiated thyroid gland carcinoma and thyroid gland papillary carcinoma. Given list is: ITPA, CHEK2, CRTC1, PLG, VAV3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047718.8520713}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29327e978ec0c117fc901790b1f6d950/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29327e978ec0c117fc901790b1f6d950/output.pkl Binary files differnew file mode 100644 index 0000000..58dc925 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29327e978ec0c117fc901790b1f6d950/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29698f52c0ddac5c0f474939caf1aaff/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29698f52c0ddac5c0f474939caf1aaff/metadata.json new file mode 100644 index 0000000..13358c1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29698f52c0ddac5c0f474939caf1aaff/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8249871730804443, "input_args": {"instruction": "\"Context: Variant rs11574938 associates Disease sclerosing cholangitis. Variant rs3184504 associates Disease sclerosing cholangitis. Variant rs114202211 associates Disease sclerosing cholangitis. Variant rs3197999 associates Disease sclerosing cholangitis. Variant rs4655215 associates Disease sclerosing cholangitis. Variant rs4676410 associates Disease sclerosing cholangitis. Variant rs3853824 associates Disease sclerosing cholangitis. Variant rs12943464 associates Disease sclerosing cholangitis. Variant rs66504140 associates Disease sclerosing cholangitis. Variant rs11306716 associates Disease sclerosing cholangitis. Variant rs12932970 associates Disease sclerosing cholangitis. Variant rs28550029 associates Disease sclerosing cholangitis. Variant rs35320439 associates Disease sclerosing cholangitis. Variant rs4703855 associates Disease sclerosing cholangitis. Variant rs4143332 associates Disease sclerosing cholangitis. Variant rs2145623 associates Disease sclerosing cholangitis. Variant rs11750385 associates Disease sclerosing cholangitis. Variant rs12942547 associates Disease sclerosing cholangitis. Variant rs11749040 associates Disease sclerosing cholangitis. Variant rs4971079 associates Disease sclerosing cholangitis. Variant rs67025039 associates Disease sclerosing cholangitis. Variant rs12968719 associates Disease sclerosing cholangitis. Variant rs4243971 associates Disease sclerosing cholangitis. Variant rs4946717 associates Disease sclerosing cholangitis. Variant rs61861422 associates Disease sclerosing cholangitis. Variant rs4851529 associates Disease sclerosing cholangitis. Variant rs12987977 associates Disease sclerosing cholangitis. Variant rs6863411 associates Disease sclerosing cholangitis. Variant rs4986790 associates Disease sclerosing cholangitis. Variant rs13107612 associates Disease sclerosing cholangitis. Variant rs11691685 associates Disease sclerosing cholangitis. Variant rs34779708 associates Disease sclerosing cholangitis. Variant rs145832854 associates Disease sclerosing cholangitis. Variant rs11649613 associates Disease sclerosing cholangitis. Variant rs35874463 associates Disease sclerosing cholangitis. Variant rs11098964 associates Disease sclerosing cholangitis. Variant rs6651252 associates Disease sclerosing cholangitis. Variant rs35667974 associates Disease sclerosing cholangitis. Variant rs4845604 associates Disease sclerosing cholangitis. Variant rs34804116 associates Disease sclerosing cholangitis. Variant rs60652743 associates Disease sclerosing cholangitis. Variant rs56167332 associates Disease sclerosing cholangitis. Variant rs61802846 associates Disease sclerosing cholangitis. Variant rs6058869 associates Disease sclerosing cholangitis. Variant rs6781808 associates Disease sclerosing cholangitis. Variant rs4921482 associates Disease sclerosing cholangitis. Variant rs3776414 associates Disease sclerosing cholangitis. Variant rs13407913 associates Disease sclerosing cholangitis. Variant rs3747517 associates Disease sclerosing cholangitis. Variant rs2111485 associates Disease sclerosing cholangitis. Variant rs9687958 associates Disease sclerosing cholangitis. Variant rs9889296 associates Disease sclerosing cholangitis. Variant rs28998802 associates Disease sclerosing cholangitis. Variant rs1800682 associates Disease sclerosing cholangitis. Variant rs9554587 associates Disease sclerosing cholangitis. Variant rs6556411 associates Disease sclerosing cholangitis. Variant rs16841904 associates Disease sclerosing cholangitis. Variant rs34920465 associates Disease sclerosing cholangitis. Variant rs6697886 associates Disease sclerosing cholangitis. Variant rs116046827 associates Disease sclerosing cholangitis. Variant rs35018800 associates Disease sclerosing cholangitis. Variant rs35074907 associates Disease sclerosing cholangitis. Variant rs3766606 associates Disease sclerosing cholangitis. Variant rs9977672 associates Disease sclerosing cholangitis. Variant rs11117431 associates Disease sclerosing cholangitis. Variant rs11749391 associates Disease sclerosing cholangitis. Variant rs28701841 associates Disease sclerosing cholangitis. Variant rs9491891 associates Disease sclerosing cholangitis. Variant rs61839660 associates Disease sclerosing cholangitis. Variant rs80060485 associates Disease sclerosing cholangitis. Variant rs36023390 associates Disease sclerosing cholangitis. Variant rs2823288 associates Disease sclerosing cholangitis. Variant rs11676348 associates Disease sclerosing cholangitis. Variant rs12131796 associates Disease sclerosing cholangitis. Variant rs80174646 associates Disease sclerosing cholangitis. Variant rs113973829 associates Disease Crohn's disease. Variant rs1343151; rs12567232; rs2902440; rs11209003; rs2201841; rs1004819; rs11465804; rs6669582; rs10789230; rs11209002; rs2064689; rs11465802; rs10889677; rs11209026; rs10889676; rs9988642 associates Disease Crohn's disease. Variant rs3197999 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs34779708 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs13204742 associates Disease Crohn's disease. Variant rs11879191 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs11175593 associates Disease Crohn's disease. Variant rs13204048 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs148319899 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs17309827 associates Disease Crohn's disease. Variant rs1998598 associates Disease Crohn's disease. Variant rs9271060 associates Disease Crohn's disease. Variant rs28449958 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs395157 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs13333062 associates Disease Crohn's disease. Variant rs4263839 associates Disease Crohn's disease. Variant rs13300218 associates Disease Crohn's disease. Variant rs1260326 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs1736135 associates Disease Crohn's disease. Variant rs11581607 associates Disease Crohn's disease. Variant rs4871611 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs17391694 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs1432296 associates Disease Crohn's disease. Variant rs4796791 associates Disease Crohn's disease. Variant rs6738825 associates Disease Crohn's disease. Variant rs2930047 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs5763767 associates Disease Crohn's disease. Variant rs4957294 associates Disease Crohn's disease. Variant rs13003464 associates Disease Crohn's disease. Variant rs11871801 associates Disease Crohn's disease. Variant rs12942547 associates Disease Crohn's disease. Variant rs12663356 associates Disease Crohn's disease. Variant rs2823286 associates Disease Crohn's disease. Variant rs151314883 associates Disease Crohn's disease. Variant rs34687326 associates Disease Crohn's disease. Variant rs1799964 associates Disease Crohn's disease. Variant rs9989735 associates Disease Crohn's disease. Variant rs4409764 associates Disease Crohn's disease. Variant rs314313 associates Disease Crohn's disease. Variant rs11742570 associates Disease Crohn's disease. Variant rs12946510 associates Disease Crohn's disease. Variant rs12994997 associates Disease Crohn's disease. Variant rs13407913 associates Disease Crohn's disease. Variant rs1736020 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs6074022 associates Disease Crohn's disease. Variant rs78898421 associates Disease Crohn's disease. Variant rs574835 associates Disease Crohn's disease. Variant rs17234657 associates Disease Crohn's disease. Variant rs423674 associates Disease Crohn's disease. Variant rs6752107 associates Disease Crohn's disease. Variant rs12677663 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs9297145 associates Disease Crohn's disease. Variant rs516246 associates Disease Crohn's disease. Variant rs2945412 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Variant rs9891119 associates Disease Crohn's disease. \\nQuestion: Out of the given list, which Variant is associated with sclerosing cholangitis and Crohn's disease. Given list is: rs3197999, rs59325236, rs6444305, rs1122171, rs1314913\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048987.0286412}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29698f52c0ddac5c0f474939caf1aaff/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29698f52c0ddac5c0f474939caf1aaff/output.pkl Binary files differnew file mode 100644 index 0000000..5255b14 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29698f52c0ddac5c0f474939caf1aaff/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29717b37d4e67bc86117a0c21cd7388b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29717b37d4e67bc86117a0c21cd7388b/metadata.json new file mode 100644 index 0000000..0812cee --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29717b37d4e67bc86117a0c21cd7388b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5580325126647949, "input_args": {"instruction": "'Context: Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-G. Disease cervix carcinoma associates Gene HLA-DQA2. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. Disease cervix carcinoma associates Gene VWA7.. Variant rs150806792 associates Disease cervix carcinoma. Variant rs28752857 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Variant HAL-DRB1*13 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Gene MIR16-2 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs8067378 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs117670375 associates Disease cervix carcinoma. Variant rs116149201 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs10175462 associates Disease cervix carcinoma. Variant rs114115115 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Gene MIR26B associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene PAX8. Variant rs9272050 associates Disease cervix carcinoma. Variant rs3130218 associates Disease cervix carcinoma. Variant rs7457728 associates Disease cervix carcinoma. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene CSNK2A1. Disease immunoglobulin alpha deficiency associates Gene ATM. Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Disease immunoglobulin alpha deficiency associates Gene ZNF341. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Disease immunoglobulin alpha deficiency associates Gene GATA3. Disease immunoglobulin alpha deficiency associates Gene CD247. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Disease immunoglobulin alpha deficiency associates Gene JAK3. Disease immunoglobulin alpha deficiency associates Gene TCN2. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Disease immunoglobulin alpha deficiency associates Gene CD79B. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene LCK. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene CASP8. Disease immunoglobulin alpha deficiency isa Disease B cell deficiency. Disease immunoglobulin alpha deficiency associates Gene CR2. Disease immunoglobulin alpha deficiency associates Gene DNMT3B. Disease immunoglobulin alpha deficiency associates Gene PIK3CG. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and immunoglobulin alpha deficiency. Given list is: SAMD9L, CDK8, HLA-DQA1, CFH, PRKN'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048183.6359494}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29717b37d4e67bc86117a0c21cd7388b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29717b37d4e67bc86117a0c21cd7388b/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29717b37d4e67bc86117a0c21cd7388b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29caa5277909a92d50d7e93c485304cc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29caa5277909a92d50d7e93c485304cc/metadata.json new file mode 100644 index 0000000..5599561 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29caa5277909a92d50d7e93c485304cc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4893181324005127, "input_args": {"instruction": "'Context: Variant rs5771069 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TNFSF15. Variant rs2858829 associates Disease ulcerative colitis. Variant rs12261843 associates Disease ulcerative colitis. Variant rs886774 associates Disease ulcerative colitis. Variant rs2111485 associates Disease ulcerative colitis. Variant rs41291790 associates Disease ulcerative colitis. Variant rs1830610 associates Disease ulcerative colitis. Variant rs9858542 associates Disease ulcerative colitis. Variant rs2823286 associates Disease ulcerative colitis. Variant rs4656958 associates Disease ulcerative colitis. Variant rs4380874 associates Disease ulcerative colitis. Variant rs2201841 associates Disease ulcerative colitis. Variant rs1182188 associates Disease ulcerative colitis. Variant rs528766038 associates Disease ulcerative colitis. Variant rs17207986 associates Disease ulcerative colitis. Variant rs4722672 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL10RB. Variant rs9268853 associates Disease ulcerative colitis. Variant rs12568930 associates Disease ulcerative colitis. Variant rs6088765 associates Disease ulcerative colitis. Variant rs4957048 associates Disease ulcerative colitis. Variant rs2155219 associates Disease ulcerative colitis. Variant rs4246905 associates Disease ulcerative colitis. Variant rs113986290 associates Disease ulcerative colitis. Variant rs2838519 associates Disease ulcerative colitis. Variant rs3197999 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene CCL20. Variant rs9263739 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL10RA. Disease ulcerative colitis associates Gene CDH3. Variant rs200349593 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL23R. Variant rs4065985 associates Disease ulcerative colitis. Variant rs55838263 associates Disease ulcerative colitis. Variant rs11083840 associates Disease ulcerative colitis. Variant rs9847710 associates Disease ulcerative colitis. Variant rs4728142 associates Disease ulcerative colitis. Variant rs11676348 associates Disease ulcerative colitis. Variant rs113010081 associates Disease ulcerative colitis. Variant rs3194051 associates Disease ulcerative colitis. Variant rs3774959 associates Disease ulcerative colitis. Variant rs9268877 associates Disease ulcerative colitis. Variant rs11581607 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL10. Variant rs9822268 associates Disease ulcerative colitis. Variant rs11742570 associates Disease ulcerative colitis. Variant rs4510766 associates Disease ulcerative colitis. Variant rs113307843 associates Disease ulcerative colitis. Variant rs1317209 associates Disease ulcerative colitis. Variant rs1521186 associates Disease ulcerative colitis. Variant rs145568234 associates Disease ulcerative colitis. Variant rs4409764 associates Disease ulcerative colitis. Variant rs661054 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SMAD3. Variant rs117506082 associates Disease ulcerative colitis. Variant rs2836878 associates Disease ulcerative colitis. Variant rs4817983 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene MMP24OS. Disease ulcerative colitis associates Gene SFMBT1. Variant rs2413583 associates Disease ulcerative colitis. Variant rs4676406 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene HLA-DQA1. Variant rs12149608 associates Disease ulcerative colitis. Variant rs12942547 associates Disease ulcerative colitis. Variant rs13003464 associates Disease ulcerative colitis. Variant rs6871626 associates Disease ulcerative colitis. Variant rs4743820 associates Disease ulcerative colitis. Variant rs4676408 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TCF4. Variant rs2189234 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene ADCY7. Variant rs6667605 associates Disease ulcerative colitis. Variant rs11209026 associates Disease ulcerative colitis.. Variant rs3851228 associates Disease ulcerative colitis. Disease ankylosing spondylitis associates Gene IL12B. Disease ankylosing spondylitis associates Gene IL1A. Disease ankylosing spondylitis associates Gene IL6R. Disease ankylosing spondylitis associates Gene IL27. Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene IL17A. Disease ankylosing spondylitis associates Gene TNFRSF1A. Disease ankylosing spondylitis associates Gene IL23R. Disease ankylosing spondylitis associates Gene IL1R1. Variant rs4676410 associates Disease ankylosing spondylitis. Gene MIR10B associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA1. Variant rs1250550 associates Disease ankylosing spondylitis. Variant rs4349859 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA2. Disease ankylosing spondylitis associates Gene CDC37. Variant rs35164067 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R2. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs1801274 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs6556416 associates Disease ankylosing spondylitis. Variant rs12141575 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Gene MIR146A associates Disease ankylosing spondylitis. Variant rs13001372 associates Disease ankylosing spondylitis. Variant rs12615545 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene USP8. Variant rs117486637 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene MEFV. Variant rs8070463 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene ANO6. Variant rs9901869 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs11624293 associates Disease ankylosing spondylitis. Variant rs6871626 associates Disease ankylosing spondylitis. Variant rs378108 associates Disease ankylosing spondylitis. Gene MIR29A associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene KIF21B. \\nQuestion: Out of the given list, which Gene is associated with ulcerative colitis and ankylosing spondylitis. Given list is: ALDH1A2, IL23R, DTNB, SNTB1, MYH7'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990126.8801892}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29caa5277909a92d50d7e93c485304cc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29caa5277909a92d50d7e93c485304cc/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/29caa5277909a92d50d7e93c485304cc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a15e55f8a908e8daaf0c972337070a8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a15e55f8a908e8daaf0c972337070a8/metadata.json new file mode 100644 index 0000000..7672f4a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a15e55f8a908e8daaf0c972337070a8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4883430004119873, "input_args": {"instruction": "\"Context: Variant rs2188554 associates Disease esophagus adenocarcinoma. Disease esophagus adenocarcinoma associates Gene KHDRBS2. Disease esophagus adenocarcinoma associates Gene TPPP. Variant rs76014404 associates Disease esophagus adenocarcinoma. Variant rs9823696 associates Disease esophagus adenocarcinoma. Gene MIR16-2 associates Disease esophagus adenocarcinoma. Disease esophagus adenocarcinoma associates Gene CFTR. Gene MIR27B associates Disease esophagus adenocarcinoma. Variant rs75783973 associates Disease esophagus adenocarcinoma. Disease esophagus adenocarcinoma associates Gene ASZ1.. Gene MIR4521 associates Disease esophagus adenocarcinoma. Variant rs13259457 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene CRTC1. Variant rs62423175 associates Disease Barrett's esophagus. Variant rs139606545 associates Disease Barrett's esophagus. Variant rs11789015 associates Disease Barrett's esophagus.. Variant rs4676893 associates Disease Barrett's esophagus. Variant rs17451754 associates Disease Barrett's esophagus. Variant rs9257809 associates Disease Barrett's esophagus. Variant rs66725070 associates Disease Barrett's esophagus. Variant rs199620551 associates Disease Barrett's esophagus. Variant rs17321041 associates Disease Barrett's esophagus. Variant rs2597301 associates Disease Barrett's esophagus. Variant rs2003476 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene ALDH1A2. Variant rs2464469 associates Disease Barrett's esophagus. Variant rs112894788 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene CTHRC1. Variant rs10419226 associates Disease Barrett's esophagus. Gene MIR196A1 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene ASCC1. Variant rs10108511 associates Disease Barrett's esophagus. Variant rs9918259 associates Disease Barrett's esophagus. Variant rs2687201 associates Disease Barrett's esophagus. Variant rs1247942 associates Disease Barrett's esophagus. \\nQuestion: Out of the given list, which Gene is associated with esophagus adenocarcinoma and Barrett's esophagus. Given list is: TERT, HLA-DQB2, EPDR1, PNPLA3, CRTC1\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048689.9509914}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a15e55f8a908e8daaf0c972337070a8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a15e55f8a908e8daaf0c972337070a8/output.pkl Binary files differnew file mode 100644 index 0000000..4f99742 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a15e55f8a908e8daaf0c972337070a8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a53382b3d8ea28c2e287491768d3b87/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a53382b3d8ea28c2e287491768d3b87/metadata.json new file mode 100644 index 0000000..ba09929 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a53382b3d8ea28c2e287491768d3b87/metadata.json @@ -0,0 +1 @@ +{"duration": 0.3812403678894043, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with periodontitis and primary angle-closure glaucoma. Given list is: EPDR1, TYR, IL23R, STN1, PRNP'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988473.7517395}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a53382b3d8ea28c2e287491768d3b87/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a53382b3d8ea28c2e287491768d3b87/output.pkl Binary files differnew file mode 100644 index 0000000..ea88012 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2a53382b3d8ea28c2e287491768d3b87/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa25e635330fcc95083018918ce33f5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa25e635330fcc95083018918ce33f5/metadata.json new file mode 100644 index 0000000..4d3dfea --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa25e635330fcc95083018918ce33f5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6971487998962402, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and membranous glomerulonephritis. Given list is: HLA-DQA1, HLA-DQB1, MYH7, TNRC6B, CRTC1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047703.7493467}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa25e635330fcc95083018918ce33f5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa25e635330fcc95083018918ce33f5/output.pkl Binary files differnew file mode 100644 index 0000000..906a46d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa25e635330fcc95083018918ce33f5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa4e78e82a2df1f50c643f9f869ec4c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa4e78e82a2df1f50c643f9f869ec4c/metadata.json new file mode 100644 index 0000000..d783d65 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa4e78e82a2df1f50c643f9f869ec4c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7730646133422852, "input_args": {"instruction": "'Context: Disease kidney disease associates Gene ZNF592. Disease kidney disease associates Gene TCF4. Disease kidney disease associates Gene CFB. Disease kidney disease associates Gene ZNF699. Disease kidney disease associates Gene FBN1. Disease kidney disease associates Gene CHEK2. Disease kidney disease associates Gene ZNF423. Disease kidney disease associates Gene ZNFX1. Disease kidney disease associates Gene ETFB. Disease kidney disease associates Gene CFH. Disease kidney disease associates Gene CTNS. Disease kidney disease associates Gene DNAJB11. Disease kidney disease associates Gene NEK8. Disease kidney disease associates Gene CTH. Disease kidney disease associates Gene ETFDH. Disease kidney disease associates Gene NEK1. Variant rs9275596 associates Disease kidney disease. Disease kidney disease associates Gene CLCN3. Disease kidney disease associates Gene KCNJ11. Disease kidney disease associates Gene FEZF1. Disease kidney disease associates Gene ZNF148. Disease kidney disease associates Gene ZFP57. Disease kidney disease associates Gene CLDN3. Disease kidney disease associates Gene DNAJC30. Disease kidney disease associates Gene GATA3. Disease kidney disease associates Gene HLA-DPB1. Disease kidney disease associates Gene FANCD2. Disease kidney disease associates Gene FRAS1. Disease kidney disease associates Gene CLDN2. Disease kidney disease associates Gene CLDN16. Disease kidney disease associates Gene HLA-B. Disease kidney disease associates Gene XRCC4. Disease kidney disease associates Gene KCNJ10. Disease kidney disease associates Gene KCTD1. Disease kidney disease associates Gene ETFA. Disease kidney disease associates Gene KCNJ1. Disease kidney disease associates Gene NEUROD2. Disease kidney disease associates Gene CTNNB1. Disease kidney disease associates Gene CLDN14. Disease kidney disease associates Gene DNAJC21. Disease kidney disease associates Gene MAFB. Disease kidney disease associates Gene CUBN. Disease kidney disease associates Gene FANCB. Disease kidney disease associates Gene FAM149B1. Disease kidney disease associates Gene DPH1. Disease kidney disease associates Gene CLDN19. Disease kidney disease associates Gene XYLT2. Disease kidney disease associates Gene RAD54B. Disease kidney disease associates Gene XYLT1. Disease kidney disease associates Gene ZBTB16. Disease kidney disease associates Gene FUZ. Disease kidney disease associates Gene FANCC. Disease kidney disease associates Gene DKC1. Disease kidney disease associates Gene FKTN. Disease kidney disease associates Gene FANCL. Disease kidney disease associates Gene NTRK1. Disease kidney disease associates Gene CYP4F22. Disease kidney disease associates Gene PROK2. Disease kidney disease associates Gene FANCF. Disease kidney disease associates Gene FANCA. Disease kidney disease associates Gene FANCI. Disease kidney disease associates Gene DNASE1. Disease kidney disease associates Gene ZBTB18. Disease kidney disease associates Gene COL3A1. Disease kidney disease associates Gene CLDN10. Disease kidney disease associates Gene NDUFB10. Disease kidney disease associates Gene CTU2. Disease kidney disease associates Gene NDUFB8. Disease kidney disease associates Gene FANCG. Disease kidney disease associates Gene NEUROD1. Disease kidney disease associates Gene PKDCC. Disease kidney disease associates Gene ZEB2. Disease kidney disease associates Gene DACT1. Disease kidney disease associates Gene NDUFB9. Disease kidney disease associates Gene TRPC6. Disease Kuhnt-Junius degeneration associates Gene CFB. Disease Kuhnt-Junius degeneration associates Gene CFH. Disease Kuhnt-Junius degeneration associates Gene SLC44A4. Variant rs10490924 associates Disease Kuhnt-Junius degeneration. Variant rs10033900 associates Disease Kuhnt-Junius degeneration. Variant rs142450006 associates Disease Kuhnt-Junius degeneration. Variant rs61941274 associates Disease Kuhnt-Junius degeneration. Variant rs10507047 associates Disease Kuhnt-Junius degeneration. Variant rs61818925 associates Disease Kuhnt-Junius degeneration. Variant rs12019136 associates Disease Kuhnt-Junius degeneration. Variant rs10922109 associates Disease Kuhnt-Junius degeneration. Variant rs429358 associates Disease Kuhnt-Junius degeneration. Variant rs147859257 associates Disease Kuhnt-Junius degeneration. Variant rs35292876 associates Disease Kuhnt-Junius degeneration. Variant rs2070895 associates Disease Kuhnt-Junius degeneration. Variant rs9332739 associates Disease Kuhnt-Junius degeneration.. Variant rs9564692 associates Disease Kuhnt-Junius degeneration. Variant rs8135665 associates Disease Kuhnt-Junius degeneration. Variant rs201459901 associates Disease Kuhnt-Junius degeneration. \\nQuestion: Out of the given list, which Gene is associated with kidney disease and Kuhnt-Junius degeneration. Given list is: CFH, HLA-DQB2, DNMT3A, TNNT2, GATA3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048123.9469342}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa4e78e82a2df1f50c643f9f869ec4c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa4e78e82a2df1f50c643f9f869ec4c/output.pkl Binary files differnew file mode 100644 index 0000000..8d7d05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aa4e78e82a2df1f50c643f9f869ec4c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2acd8c1c890c10886914cf3976faaa2f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2acd8c1c890c10886914cf3976faaa2f/metadata.json new file mode 100644 index 0000000..a22c42a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2acd8c1c890c10886914cf3976faaa2f/metadata.json @@ -0,0 +1 @@ +{"duration": 11.986957311630249, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with kidney disease and age related macular degeneration. Given list is: CFH, MUC5B, DAB2IP, BTN2A1, ADH1B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048118.06931}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2acd8c1c890c10886914cf3976faaa2f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2acd8c1c890c10886914cf3976faaa2f/output.pkl Binary files differnew file mode 100644 index 0000000..72d2068 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2acd8c1c890c10886914cf3976faaa2f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aff666b61b6e93c1724f83809ea0d39/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aff666b61b6e93c1724f83809ea0d39/metadata.json new file mode 100644 index 0000000..c3104a4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aff666b61b6e93c1724f83809ea0d39/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6722338199615479, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and estrogen-receptor negative breast cancer. Given list is: STAT4, MYH7, BTBD9, ERAP1, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047833.673106}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aff666b61b6e93c1724f83809ea0d39/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aff666b61b6e93c1724f83809ea0d39/output.pkl Binary files differnew file mode 100644 index 0000000..bf1b5e1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2aff666b61b6e93c1724f83809ea0d39/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b8e3649f2a7cc601f7e176deebeee7e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b8e3649f2a7cc601f7e176deebeee7e/metadata.json new file mode 100644 index 0000000..e31da9b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b8e3649f2a7cc601f7e176deebeee7e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8854522705078125, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene RUNX1. Disease allergic rhinitis associates Gene MFSD13A. Disease allergic rhinitis associates Gene HLA-B. Variant chr6:32631116 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs11685995 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFSF4. Variant rs45613035 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF11A. Disease allergic rhinitis associates Gene CSF2RB. Disease allergic rhinitis associates Gene AHI1. Disease allergic rhinitis associates Gene MS4A2. Variant rs4616071 associates Disease allergic rhinitis. Variant rs950881 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs10468514 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene FOSL2. Variant rs61192126 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD51B. Disease allergic rhinitis associates Gene IL6R. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs5743618 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene PRDM16. Variant rs10501149 associates Disease allergic rhinitis. Variant rs6021268 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Variant rs1140310 associates Disease allergic rhinitis. Variant rs186856025 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene COL15A1. Variant rs59183580 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene STAT6. Variant rs6066184 associates Disease allergic rhinitis. Variant rs61839660 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DPB1. Variant rs61815559 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ATXN2. Variant rs62404084 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Variant rs9816071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DMB. Variant rs12886625 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RUNX3. Variant rs1438673 associates Disease allergic rhinitis.. Disease allergic rhinitis associates Gene FCER1G. Disease allergic rhinitis associates Gene SLC15A2. Variant rs4381563 associates Disease allergic rhinitis. Variant rs6986151 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Variant rs13185930 associates Disease allergic rhinitis. Variant rs1504215 associates Disease allergic rhinitis. Variant rs4845604 associates Disease allergic rhinitis. Variant rs13166760 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Variant rs17513503 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TTC6. Variant rs61907713 associates Disease allergic rhinitis. Variant rs507666 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL2RA. Disease allergic rhinitis associates Gene SULT1A1. Variant rs9549238 associates Disease allergic rhinitis. Variant rs1950897 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene INPP5D. Variant rs12122629 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Variant rs7953139 associates Disease allergic rhinitis. Variant rs3024971 associates Disease allergic rhinitis. Variant rs13395467 associates Disease allergic rhinitis. Variant rs7601800 associates Disease allergic rhinitis. Variant rs2160203 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCD2. Variant rs12203592 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Disease myelodysplastic syndrome associates Gene TSR2. Disease myelodysplastic syndrome associates Gene FANCL. Disease myelodysplastic syndrome associates Gene PALB2. Disease myelodysplastic syndrome associates Gene PTPN11. Disease myelodysplastic syndrome associates Gene FANCE. Disease myelodysplastic syndrome associates Gene FANCC. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene FANCI. Disease myelodysplastic syndrome associates Gene FANCG. Disease myelodysplastic syndrome associates Gene FANCM. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene ATRX. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs104894229 associates Disease myelodysplastic syndrome.. Variant rs121913500 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA1. Variant rs11540652 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51C. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs387906631 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA2. Variant rs752856195 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene HAX1. Variant rs121434596 associates Disease myelodysplastic syndrome. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs193303018 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene XRCC2. Disease myelodysplastic syndrome associates Gene ERCC4. Gene MIR124-3 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51. Disease myelodysplastic syndrome associates Gene CSF3R. Variant rs1576745225 associates Disease myelodysplastic syndrome. Gene MIR124-2 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CEP57. Variant rs121913237 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene SH2B3. Disease myelodysplastic syndrome associates Gene TET2. Disease myelodysplastic syndrome associates Gene RPS20. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene ADH5. Disease myelodysplastic syndrome associates Gene CDKN2A. Disease myelodysplastic syndrome associates Gene MDM2. Variant rs147001633 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene BRCA2. Disease myelodysplastic syndrome associates Gene CHEK2. Variant rs752746786 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RUNX1. Disease myelodysplastic syndrome associates Gene ADA2. Disease myelodysplastic syndrome associates Gene RPS19. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and myelodysplastic syndrome. Given list is: TRAF3IP2, FADS1, SHTN1, ATXN2, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048257.2909591}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b8e3649f2a7cc601f7e176deebeee7e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b8e3649f2a7cc601f7e176deebeee7e/output.pkl Binary files differnew file mode 100644 index 0000000..f7a6ee0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b8e3649f2a7cc601f7e176deebeee7e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b90911c37c81e086efb1103843e1e51/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b90911c37c81e086efb1103843e1e51/metadata.json new file mode 100644 index 0000000..3edfda1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b90911c37c81e086efb1103843e1e51/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5339765548706055, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with gastric fundus cancer and atrophic gastritis. Given list is: rs2294008, rs2072499, rs3197999, rs1537377, rs988958'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049048.5088222}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b90911c37c81e086efb1103843e1e51/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b90911c37c81e086efb1103843e1e51/output.pkl Binary files differnew file mode 100644 index 0000000..bb855d8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2b90911c37c81e086efb1103843e1e51/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2bdb89a38179049ed3fb6ea1876a60f4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2bdb89a38179049ed3fb6ea1876a60f4/metadata.json new file mode 100644 index 0000000..e5b2cef --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2bdb89a38179049ed3fb6ea1876a60f4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5833971500396729, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and lung carcinoma. Given list is: TERT, IL23R, PHACTR1, SLC2A9, JRK'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048724.576829}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2bdb89a38179049ed3fb6ea1876a60f4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2bdb89a38179049ed3fb6ea1876a60f4/output.pkl Binary files differnew file mode 100644 index 0000000..fb4c70e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2bdb89a38179049ed3fb6ea1876a60f4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2c4625d15f7c13a6f4e3d6d0d36e7654/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2c4625d15f7c13a6f4e3d6d0d36e7654/metadata.json new file mode 100644 index 0000000..4f6df13 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2c4625d15f7c13a6f4e3d6d0d36e7654/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9841985702514648, "input_args": {"instruction": "'Context: Disease hypertrophic cardiomyopathy associates Gene HLA-B. Disease hypertrophic cardiomyopathy associates Gene MYOZ2. Disease hypertrophic cardiomyopathy associates Gene FANCD2. Disease hypertrophic cardiomyopathy associates Gene FANCF. Disease hypertrophic cardiomyopathy associates Gene FANCL. Disease hypertrophic cardiomyopathy associates Gene FANCA. Disease hypertrophic cardiomyopathy associates Gene FANCI. Disease hypertrophic cardiomyopathy associates Gene FANCM. Variant rs2078661310 associates Disease hypertrophic cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene FANCC. Disease hypertrophic cardiomyopathy associates Gene FANCB. Variant rs2079392310 associates Disease hypertrophic cardiomyopathy. Variant rs1057524030 associates Disease hypertrophic cardiomyopathy. Variant rs192883939 associates Disease hypertrophic cardiomyopathy. Variant rs878853956 associates Disease hypertrophic cardiomyopathy. Variant rs878853954 associates Disease hypertrophic cardiomyopathy. Variant rs2079395612 associates Disease hypertrophic cardiomyopathy. Variant rs759226950 associates Disease hypertrophic cardiomyopathy. Variant rs1892151210 associates Disease hypertrophic cardiomyopathy. Variant rs2095896870 associates Disease hypertrophic cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene FKBP6. Variant rs1278436075 associates Disease hypertrophic cardiomyopathy. Variant rs878853955 associates Disease hypertrophic cardiomyopathy. Variant rs1892944510 associates Disease hypertrophic cardiomyopathy. Variant rs1892855882 associates Disease hypertrophic cardiomyopathy. Variant rs1892454098 associates Disease hypertrophic cardiomyopathy. Variant rs143922069 associates Disease hypertrophic cardiomyopathy. Variant rs1057518584 associates Disease hypertrophic cardiomyopathy. Variant rs1031194974 associates Disease hypertrophic cardiomyopathy. Variant rs1892271096 associates Disease hypertrophic cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene FANCG. Variant rs878853957 associates Disease hypertrophic cardiomyopathy. Variant rs1430666956 associates Disease hypertrophic cardiomyopathy. Variant rs1892816286 associates Disease hypertrophic cardiomyopathy. Variant rs1892132855 associates Disease hypertrophic cardiomyopathy. Variant rs2079660280 associates Disease hypertrophic cardiomyopathy. Variant rs1892853470 associates Disease hypertrophic cardiomyopathy. Variant rs1892409857 associates Disease hypertrophic cardiomyopathy. Variant rs149193520 associates Disease hypertrophic cardiomyopathy. Variant rs1892152784 associates Disease hypertrophic cardiomyopathy. Variant rs1892891910 associates Disease hypertrophic cardiomyopathy. Variant rs2079541369 associates Disease hypertrophic cardiomyopathy. Variant rs1051971790 associates Disease hypertrophic cardiomyopathy. Variant rs1057521992 associates Disease hypertrophic cardiomyopathy. Variant rs2072182869 associates Disease hypertrophic cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene FANCE. Variant rs2095896066 associates Disease hypertrophic cardiomyopathy. Variant rs868789318 associates Disease hypertrophic cardiomyopathy. Variant rs786204091 associates Disease hypertrophic cardiomyopathy. Variant rs750204313 associates Disease hypertrophic cardiomyopathy. Variant rs878853840 associates Disease hypertrophic cardiomyopathy. Variant rs1060501432 associates Disease hypertrophic cardiomyopathy. Variant rs1892728325 associates Disease hypertrophic cardiomyopathy. Variant rs1892178080 associates Disease hypertrophic cardiomyopathy. Variant rs2095888152 associates Disease hypertrophic cardiomyopathy. Variant rs1963877824 associates Disease hypertrophic cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene MYH7. Variant rs2095880876 associates Disease hypertrophic cardiomyopathy. Variant rs1439599919 associates Disease hypertrophic cardiomyopathy. Variant rs368588523 associates Disease hypertrophic cardiomyopathy. Variant rs1060501434 associates Disease hypertrophic cardiomyopathy. Variant rs886051096 associates Disease hypertrophic cardiomyopathy. Variant rs1057520814 associates Disease hypertrophic cardiomyopathy. Variant rs1892206760 associates Disease hypertrophic cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene MYL2. Variant rs1893032620 associates Disease hypertrophic cardiomyopathy. Variant rs1892948780 associates Disease hypertrophic cardiomyopathy. Variant rs1057522198 associates Disease hypertrophic cardiomyopathy. Variant rs2095885868 associates Disease hypertrophic cardiomyopathy. Variant rs2095890510 associates Disease hypertrophic cardiomyopathy. Variant rs1060501439 associates Disease hypertrophic cardiomyopathy. Variant rs1060501438 associates Disease hypertrophic cardiomyopathy. Variant rs1892752744 associates Disease hypertrophic cardiomyopathy. Variant rs2095885090 associates Disease hypertrophic cardiomyopathy. Variant rs1892500486 associates Disease hypertrophic cardiomyopathy. Disease dilated cardiomyopathy associates Gene MYH6. Variant rs142143310 associates Disease dilated cardiomyopathy. Disease dilated cardiomyopathy associates Gene MYH7. Variant rs1938608628 associates Disease dilated cardiomyopathy. Variant rs1430856878 associates Disease dilated cardiomyopathy. Variant rs142951316 associates Disease dilated cardiomyopathy. Variant rs1427758049 associates Disease dilated cardiomyopathy. Variant rs2095752062 associates Disease dilated cardiomyopathy. Variant rs56284940 associates Disease dilated cardiomyopathy. Variant rs936216558 associates Disease dilated cardiomyopathy. Variant rs368506422 associates Disease dilated cardiomyopathy. Variant rs142951505 associates Disease dilated cardiomyopathy. Variant rs28763958 associates Disease dilated cardiomyopathy. Variant rs56264840 associates Disease dilated cardiomyopathy. Variant rs183950022 associates Disease dilated cardiomyopathy. Variant rs370756162 associates Disease dilated cardiomyopathy. Variant rs192827821 associates Disease dilated cardiomyopathy. Variant rs192766485 associates Disease dilated cardiomyopathy. Variant rs1915485566 associates Disease dilated cardiomyopathy. Variant rs200108545 associates Disease dilated cardiomyopathy. Variant rs2047085522 associates Disease dilated cardiomyopathy. Variant rs1948583041 associates Disease dilated cardiomyopathy. Variant rs1669494952 associates Disease dilated cardiomyopathy. Variant rs527271064 associates Disease dilated cardiomyopathy. Variant rs368552426 associates Disease dilated cardiomyopathy. Variant rs1528182 associates Disease dilated cardiomyopathy. Disease dilated cardiomyopathy associates Gene FHL2. Variant rs144815863 associates Disease dilated cardiomyopathy. Variant rs368282893 associates Disease dilated cardiomyopathy. Variant rs142885240 associates Disease dilated cardiomyopathy. Variant rs140811086 associates Disease dilated cardiomyopathy. Variant rs960962542 associates Disease dilated cardiomyopathy. Variant rs587782952 associates Disease dilated cardiomyopathy. Variant rs188370772 associates Disease dilated cardiomyopathy. Variant rs1057515819 associates Disease dilated cardiomyopathy. Variant rs368561764 associates Disease dilated cardiomyopathy. Variant rs139610204 associates Disease dilated cardiomyopathy. Disease dilated cardiomyopathy associates Gene HAMP. Variant rs371620771 associates Disease dilated cardiomyopathy. Variant rs62232870 associates Disease dilated cardiomyopathy. Variant rs144946187 associates Disease dilated cardiomyopathy. Variant rs587782959 associates Disease dilated cardiomyopathy. Variant rs1037792824 associates Disease dilated cardiomyopathy. Variant rs143930021 associates Disease dilated cardiomyopathy. Variant rs191527230 associates Disease dilated cardiomyopathy. Variant rs187065627 associates Disease dilated cardiomyopathy. Variant rs200830807 associates Disease dilated cardiomyopathy. Variant rs1588971724 associates Disease dilated cardiomyopathy. Variant rs377506142 associates Disease dilated cardiomyopathy. Variant rs370328209 associates Disease dilated cardiomyopathy. Variant rs1590673852 associates Disease dilated cardiomyopathy. Variant rs144200285 associates Disease dilated cardiomyopathy. Variant rs920640841 associates Disease dilated cardiomyopathy. Variant rs200942544 associates Disease dilated cardiomyopathy. Variant rs528059873 associates Disease dilated cardiomyopathy. Variant rs878854502 associates Disease dilated cardiomyopathy. Variant rs143121072 associates Disease dilated cardiomyopathy. Variant rs1588846853 associates Disease dilated cardiomyopathy. Variant rs371142225 associates Disease dilated cardiomyopathy. Variant rs1259706318 associates Disease dilated cardiomyopathy. Disease dilated cardiomyopathy associates Gene DMD. Variant rs1575584918 associates Disease dilated cardiomyopathy. Variant rs557142042 associates Disease dilated cardiomyopathy. Variant rs558954630 associates Disease dilated cardiomyopathy. Variant rs151318437 associates Disease dilated cardiomyopathy. Variant rs1407608886 associates Disease dilated cardiomyopathy. Variant rs878854982 associates Disease dilated cardiomyopathy. Variant rs570878629 associates Disease dilated cardiomyopathy. Variant rs1057515818 associates Disease dilated cardiomyopathy. Variant rs1939470316 associates Disease dilated cardiomyopathy. Variant rs2049345864 associates Disease dilated cardiomyopathy. Variant rs563762318 associates Disease dilated cardiomyopathy. Variant rs374848954 associates Disease dilated cardiomyopathy. Variant rs1938606140 associates Disease dilated cardiomyopathy. Variant rs1008629337 associates Disease dilated cardiomyopathy. \\nQuestion: Out of the given list, which Gene is associated with hypertrophic cardiomyopathy and dilated cardiomyopathy. Given list is: ZFPM2, HLA-B, BRCA2, MST1, MYH7'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989476.6809}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2c4625d15f7c13a6f4e3d6d0d36e7654/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2c4625d15f7c13a6f4e3d6d0d36e7654/output.pkl Binary files differnew file mode 100644 index 0000000..c6eda8b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2c4625d15f7c13a6f4e3d6d0d36e7654/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2cdd5f4df9224ae96f0367b5174e96dc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2cdd5f4df9224ae96f0367b5174e96dc/metadata.json new file mode 100644 index 0000000..441c711 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2cdd5f4df9224ae96f0367b5174e96dc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6009113788604736, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lymphoma and hepatitis B. Given list is: HLA-DQB2, YLPM1, MTTP, HAAO, PTPN22'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990008.3968549}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2cdd5f4df9224ae96f0367b5174e96dc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2cdd5f4df9224ae96f0367b5174e96dc/output.pkl Binary files differnew file mode 100644 index 0000000..1531d41 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2cdd5f4df9224ae96f0367b5174e96dc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2deb600145174f0062a302e1e25a1ba8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2deb600145174f0062a302e1e25a1ba8/metadata.json new file mode 100644 index 0000000..35e3e55 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2deb600145174f0062a302e1e25a1ba8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9182074069976807, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene TLR1. Disease allergic rhinitis associates Gene SLC27A4. Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene TNFRSF8. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene TNFRSF11A. Disease allergic rhinitis associates Gene PLCL1. Variant rs2961920 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene LPP. Disease allergic rhinitis associates Gene HLA-DQA1. Variant rs34004019 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Variant rs35350651 associates Disease allergic rhinitis. Variant rs11169225 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Variant rs16858573 associates Disease allergic rhinitis. Variant rs35597970 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SMAD3. Variant rs12623041 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFSF4. Variant rs12952581 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC15A2. Variant rs13277355 associates Disease allergic rhinitis. Variant rs2139049 associates Disease allergic rhinitis. Variant rs1241357 associates Disease allergic disease. Variant rs4971089 associates Disease allergic disease. Variant rs11169225 associates Disease allergic disease. Variant rs12743520 associates Disease allergic disease. Variant rs11652139 associates Disease allergic disease. Variant rs519973 associates Disease allergic disease. Variant rs12413578 associates Disease allergic disease. Variant rs9911533 associates Disease allergic disease. Variant rs5743618 associates Disease allergic disease. Variant rs11171739 associates Disease allergic disease. Variant rs28393318 associates Disease allergic disease. Variant rs6906021 associates Disease allergic disease. Disease allergic disease associates Gene ARL6. Variant rs12551834 associates Disease allergic disease. Variant rs11071559 associates Disease allergic disease. Disease allergic disease associates Gene SLC27A4. Variant rs11644510 associates Disease allergic disease. Variant rs34004019 associates Disease allergic disease. Variant rs2910162 associates Disease allergic disease. Variant rs12596613 associates Disease allergic disease. Variant rs17607589 associates Disease allergic disease. Variant rs2070902 associates Disease allergic disease. Disease allergic disease associates Gene SOX6. Variant rs4938576 associates Disease allergic disease. Variant rs4671601 associates Disease allergic disease. Variant rs115045402 associates Disease allergic disease. Variant SLC39A8 associates Disease allergic disease. Variant rs2070901 associates Disease allergic disease. Variant rs6990534 associates Disease allergic disease. Variant rs36045143 associates Disease allergic disease. Disease rhinitis associates Gene SLC27A4. Disease rhinitis associates Gene SLC29A3. Disease rhinitis associates Gene CFAP221. Disease rhinitis associates Gene CFAP298. Disease rhinitis associates Gene DNAL1. Disease rhinitis associates Gene TNFSF11. Disease rhinitis associates Gene CFAP300. Disease rhinitis associates Gene DNAH11. Disease rhinitis associates Gene NLRP1. Disease rhinitis associates Gene DNAH1. Disease rhinitis associates Gene RSPH1. Disease rhinitis associates Gene FOXJ1. Disease rhinitis associates Gene KRT74. Disease rhinitis associates Gene PLCG2. Disease rhinitis associates Gene CARMIL2. Disease rhinitis associates Gene SPAG1. Disease rhinitis associates Gene BLM. Disease rhinitis associates Gene RSPH9. Disease rhinitis associates Gene OFD1. Disease rhinitis associates Gene LRRC56. Disease rhinitis associates Gene DNAAF11. Disease rhinitis associates Gene RAG1. Disease rhinitis associates Gene DNAJB13. Disease rhinitis associates Gene CLCN7. Disease rhinitis associates Gene DNAAF1. Disease rhinitis associates Gene RSPH3. Disease rhinitis associates Gene ELANE. Disease rhinitis associates Gene IL21R. Disease rhinitis associates Gene DNAI1. Disease rhinitis associates Gene DNAH9. Disease allergic rhinitis isa Disease respiratory allergy. Disease respiratory allergy isa Disease allergic disease.. Disease allergic asthma isa Disease respiratory allergy. Disease ontology identifier of autoimmune disease of eyes, ear, nose and throat is DOID:0060030. \\nQuestion: Out of the given list, which Gene is associated with limited scleroderma and allergic rhinitis. Given list is: TLR1, WNT4, HLA-DPA1, PSCA, DTNB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988480.564773}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2deb600145174f0062a302e1e25a1ba8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2deb600145174f0062a302e1e25a1ba8/output.pkl Binary files differnew file mode 100644 index 0000000..56b0bc2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2deb600145174f0062a302e1e25a1ba8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e472721d6f1a67881fc2f17727a66af/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e472721d6f1a67881fc2f17727a66af/metadata.json new file mode 100644 index 0000000..95e2a68 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e472721d6f1a67881fc2f17727a66af/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5401313304901123, "input_args": {"instruction": "'Context: Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene TP53. Variant rs59060240 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RTEL1. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene ETFA. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene LZTR1. Variant rs1801591 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TUBB. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene PIK3CA. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene SIX3. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene TMEM106B. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene TP53. Variant rs2157719 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CPLANE1. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene PSEN1. Disease central nervous system cancer associates Gene PDGFB. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ELP1. Disease central nervous system cancer associates Gene POLR2A. Disease central nervous system cancer associates Gene TCTN3. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene LRP5. Disease central nervous system cancer associates Gene LUZP1. Disease central nervous system cancer associates Gene ALX3. Variant rs1555876140 associates Disease central nervous system cancer. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TRAF7. Disease central nervous system cancer associates Gene OFD1. Variant rs75061358 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene LMNA. Disease central nervous system cancer associates Gene BDNF. Variant rs1920116 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SIX6. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene ALX1. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene YY1. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GRN. Disease central nervous system cancer associates Gene PDE6D. Variant rs12230172 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene MYO1H. Disease central nervous system cancer associates Gene FAT4. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene MBD4. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene KLLN. Variant rs4809324 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene APC. Disease central nervous system cancer associates Gene BMPR1A. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene BRD4. Disease central nervous system cancer associates Gene MSH6. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and central nervous system cancer. Given list is: PLG, HLA-DQA1, IL6, ATXN2, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989512.6282856}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e472721d6f1a67881fc2f17727a66af/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e472721d6f1a67881fc2f17727a66af/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e472721d6f1a67881fc2f17727a66af/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e4d3d43a991fdbf2e9f5c74bc1dacba/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e4d3d43a991fdbf2e9f5c74bc1dacba/metadata.json new file mode 100644 index 0000000..cd07661 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e4d3d43a991fdbf2e9f5c74bc1dacba/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4810042381286621, "input_args": {"instruction": "'Context: Disease lung squamous cell carcinoma associates Gene BRCA2. Variant rs967461896 associates Disease lung squamous cell carcinoma. Variant rs142618987 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene CYP2A6.. Variant rs1057519889 associates Disease lung squamous cell carcinoma. Variant rs149866169 associates Disease lung squamous cell carcinoma. Variant rs866987936 associates Disease lung squamous cell carcinoma. Variant rs1057519884 associates Disease lung squamous cell carcinoma. Variant rs1057519789 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene CHEK2. Variant rs465498 associates Disease lung squamous cell carcinoma. Variant rs34928889 associates Disease lung squamous cell carcinoma. Variant rs56354945 associates Disease lung squamous cell carcinoma. Variant rs36109883 associates Disease lung squamous cell carcinoma. Variant rs1057519882 associates Disease lung squamous cell carcinoma. Variant rs148883465 associates Disease lung squamous cell carcinoma. Variant rs1057519895 associates Disease lung squamous cell carcinoma. Variant rs34192549 associates Disease lung squamous cell carcinoma. Variant rs876658468 associates Disease lung squamous cell carcinoma. Variant rs1057519926 associates Disease lung squamous cell carcinoma. Variant rs1057520039 associates Disease lung squamous cell carcinoma. Variant rs1057519925 associates Disease lung squamous cell carcinoma. Variant rs1057519990 associates Disease lung squamous cell carcinoma. Variant rs1057519920 associates Disease lung squamous cell carcinoma. Variant rs1057519883 associates Disease lung squamous cell carcinoma. Variant rs1057519994 associates Disease lung squamous cell carcinoma. Variant rs1057519922 associates Disease lung squamous cell carcinoma. Variant rs1057519896 associates Disease lung squamous cell carcinoma. Variant rs1057519992 associates Disease lung squamous cell carcinoma. Variant rs1057519912 associates Disease lung squamous cell carcinoma. Variant rs1057519921 associates Disease lung squamous cell carcinoma. Variant rs1057519997 associates Disease lung squamous cell carcinoma. Variant rs1057519923 associates Disease lung squamous cell carcinoma. Variant rs1057519931 associates Disease lung squamous cell carcinoma. Variant rs1057519932 associates Disease lung squamous cell carcinoma. Variant rs876660821 associates Disease lung squamous cell carcinoma. Variant rs1057519879 associates Disease lung squamous cell carcinoma. Variant rs1057519930 associates Disease lung squamous cell carcinoma. Variant rs148924904 associates Disease lung squamous cell carcinoma. Variant rs1057519928 associates Disease lung squamous cell carcinoma. Variant rs1668958808 associates Disease lung squamous cell carcinoma. Variant rs1057519980 associates Disease lung squamous cell carcinoma. Variant rs1057519790 associates Disease lung squamous cell carcinoma. Variant rs116461399 associates Disease lung squamous cell carcinoma. Variant rs1057519975 associates Disease lung squamous cell carcinoma. Variant rs876659802 associates Disease lung squamous cell carcinoma. Variant rs1057519978 associates Disease lung squamous cell carcinoma. Variant rs1057519996 associates Disease lung squamous cell carcinoma. Variant rs149949 associates Disease lung squamous cell carcinoma. Variant rs1057519991 associates Disease lung squamous cell carcinoma. Variant rs1057519984 associates Disease lung squamous cell carcinoma. Variant rs3795850 associates Disease lung squamous cell carcinoma. Variant rs56084662 associates Disease lung squamous cell carcinoma. Variant rs1057519924 associates Disease lung squamous cell carcinoma. Variant rs1057519976 associates Disease lung squamous cell carcinoma. Variant rs104894226 associates Disease lung squamous cell carcinoma. Variant rs375874539 associates Disease lung squamous cell carcinoma. Variant rs1669420011 associates Disease lung squamous cell carcinoma. Variant rs1057519982 associates Disease lung squamous cell carcinoma. Variant rs864622237 associates Disease lung squamous cell carcinoma. Variant rs1057519986 associates Disease lung squamous cell carcinoma. Variant rs56404467 associates Disease lung squamous cell carcinoma. Variant rs985033810 associates Disease lung squamous cell carcinoma. Variant rs942158624 associates Disease lung squamous cell carcinoma. Variant rs34878803 associates Disease lung squamous cell carcinoma. Variant rs1057519989 associates Disease lung squamous cell carcinoma. Gene MIR101-2 associates Disease lung squamous cell carcinoma. Variant rs1057520004 associates Disease lung squamous cell carcinoma. Variant rs1355287 associates Disease lung squamous cell carcinoma. Variant rs544282452 associates Disease lung squamous cell carcinoma. Variant rs1057519791 associates Disease lung squamous cell carcinoma. Variant rs56113850 associates Disease lung squamous cell carcinoma. Variant rs1057520003 associates Disease lung squamous cell carcinoma. Variant rs1057519988 associates Disease lung squamous cell carcinoma. Variant rs467095 associates Disease lung squamous cell carcinoma. Disease estrogen-receptor negative breast cancer associates Gene BRCA2. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs149934734 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs17356907 associates Disease estrogen-receptor negative breast cancer. Variant rs56345976 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs12710696 associates Disease estrogen-receptor negative breast cancer.. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs4849887 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Variant rs143521471 associates Disease estrogen-receptor negative breast cancer. Variant rs11374964 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TCF7L2. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with lung squamous cell carcinoma and estrogen-receptor negative breast cancer. Given list is: STAT4, CACNA2D1, KIF1B, ATXN2, BRCA2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048757.4610243}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e4d3d43a991fdbf2e9f5c74bc1dacba/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e4d3d43a991fdbf2e9f5c74bc1dacba/output.pkl Binary files differnew file mode 100644 index 0000000..6634bf1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2e4d3d43a991fdbf2e9f5c74bc1dacba/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2ee6170d471ec3ad4ba97b86f9841cff/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2ee6170d471ec3ad4ba97b86f9841cff/metadata.json new file mode 100644 index 0000000..7a93fee --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2ee6170d471ec3ad4ba97b86f9841cff/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7066738605499268, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Sjogren's syndrome and systemic scleroderma. Given list is: BTN3A1, HLA-DQB1, JAK2, TGM2, STAT4\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048191.8399231}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2ee6170d471ec3ad4ba97b86f9841cff/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2ee6170d471ec3ad4ba97b86f9841cff/output.pkl Binary files differnew file mode 100644 index 0000000..987355a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2ee6170d471ec3ad4ba97b86f9841cff/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f21ded26f8bbe38d1e7cab43e47f9fe/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f21ded26f8bbe38d1e7cab43e47f9fe/metadata.json new file mode 100644 index 0000000..54a0ce7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f21ded26f8bbe38d1e7cab43e47f9fe/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7103786468505859, "input_args": {"instruction": "'Context: Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of the skin. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of the skin. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis associates Gene RAC2. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of blood and blood-forming tissues. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT16. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene KRT6A. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene SMARCAD1. Disease keratosis presents Symptom Erythema. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene GJB3. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene CAST. Disease keratosis associates Gene RHBDF2. Disease epidermodysplasia verruciformis resembles Disease keratosis. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene VPS33B. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene PERP. Disease keratosis associates Gene JUP. Disease nonepidermolytic palmoplantar keratoderma resembles Disease keratosis. Disease keratosis resembles Disease acrodermatitis. Disease keratosis presents Symptom Purpura. Disease keratosis associates Gene SASH1. Disease keratosis associates Gene KANK2. Disease keratosis presents Symptom Skin Manifestations. Disease keratosis associates Gene TAT. Disease keratosis associates Gene GJA1. \\nQuestion: Out of the given list, which Variant is associated with anti-neutrophil antibody associated vasculitis and keratinocyte carcinoma\"@e. Given list is: rs2812378, rs17145188, rs12931267, rs6679677, rs12413409'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049114.0471854}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f21ded26f8bbe38d1e7cab43e47f9fe/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f21ded26f8bbe38d1e7cab43e47f9fe/output.pkl Binary files differnew file mode 100644 index 0000000..d7123c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f21ded26f8bbe38d1e7cab43e47f9fe/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f4cec6582db39f193968378454978f1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f4cec6582db39f193968378454978f1/metadata.json new file mode 100644 index 0000000..d8ba80e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f4cec6582db39f193968378454978f1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5345323085784912, "input_args": {"instruction": "'Context: Disease hypothyroidism associates Gene RASGRP1. Disease hypothyroidism associates Gene PRLR. Disease hypothyroidism associates Gene VAV3. Disease hypothyroidism associates Gene BRAF. Disease hypothyroidism associates Gene TNFRSF14. Variant rs1266904735 associates Disease hypothyroidism. Variant rs11406335 associates Disease hypothyroidism. Disease hypothyroidism associates Gene LEPR. Disease hypothyroidism associates Gene NFATC1. Variant rs3184504 associates Disease hypothyroidism. Disease hypothyroidism associates Gene XRCC4. Disease hypothyroidism associates Gene PIK3R5. Disease hypothyroidism associates Gene PTEN. Disease hypothyroidism associates Gene PIEZO1. Variant rs57145876 associates Disease hypothyroidism. Variant rs142063461 associates Disease hypothyroidism. Variant rs113229608 associates Disease hypothyroidism. Variant chr14:81143695 associates Disease hypothyroidism. Disease hypothyroidism associates Gene HLA-DPB1. Variant rs57938373 associates Disease hypothyroidism. Variant rs370475698 associates Disease hypothyroidism. Variant rs6908626 associates Disease hypothyroidism. Variant rs12582330 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TG. Disease hypothyroidism associates Gene PRKAR1A. Disease hypothyroidism associates Gene PLAA. Variant rs61101437 associates Disease hypothyroidism. Disease hypothyroidism associates Gene GLI3. Disease hypothyroidism associates Gene STAT4. Variant rs113473633 associates Disease hypothyroidism. Variant rs57033802 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PLVAP. Disease hypothyroidism associates Gene POLR3GL. Variant rs143210911 associates Disease hypothyroidism. Variant rs9273370 associates Disease hypothyroidism. Variant rs114378220 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TSHB. Variant rs3850765 associates Disease hypothyroidism. Disease hypothyroidism associates Gene POU3F4. Variant rs4835534 associates Disease hypothyroidism. Variant rs13355543 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TRHR. Variant rs4823073 associates Disease hypothyroidism. Variant rs11666808 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PTCH1. Disease hypothyroidism associates Gene LIG4. Variant rs12485900 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PLAG1. Variant rs1561924 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PPP1R15B. Variant rs9562955 associates Disease hypothyroidism. Disease hypothyroidism associates Gene NKX2-5. Variant rs61759532 associates Disease hypothyroidism. Variant rs151289341 associates Disease hypothyroidism. Disease hypothyroidism associates Gene SGPL1. Disease hypothyroidism associates Gene PLCH1. Disease hypothyroidism associates Gene STAT1. Disease hypothyroidism associates Gene FGF13. Disease hypothyroidism associates Gene IL2RG. Disease hypothyroidism associates Gene RPL10. Variant rs6833591 associates Disease hypothyroidism. Disease hypothyroidism associates Gene CDHR5. Variant rs8054578 associates Disease hypothyroidism. Disease hypothyroidism associates Gene POLG. Variant rs57096603 associates Disease hypothyroidism. Variant rs6914622 associates Disease hypothyroidism. Variant rs3775291 associates Disease hypothyroidism. Variant rs2111485 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PIK3C2A. Variant rs3118469 associates Disease hypothyroidism. Variant rs34536443 associates Disease hypothyroidism. Disease hypothyroidism associates Gene CTNNB1. Disease hypothyroidism associates Gene GP1BB. Disease hypothyroidism associates Gene PROP1. Variant rs142804409 associates Disease hypothyroidism. Variant rs11693806 associates Disease thyroid gland carcinoma. Variant rs6759952 associates Disease thyroid gland carcinoma. Variant rs9642727 associates Disease thyroid gland carcinoma. Variant rs56062135 associates Disease thyroid gland carcinoma. Gene MIR449B associates Disease thyroid gland carcinoma. Variant rs116909374 associates Disease thyroid gland carcinoma. Gene MIR204 associates Disease thyroid gland carcinoma. Variant rs944289 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene NKX2-1. Variant rs965513 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene RASGRP1. Variant rs925489 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene SEMA3C. Variant rs368187 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene PDE11A. Disease thyroid gland carcinoma associates Gene DMPK. Disease thyroid gland carcinoma associates Gene SEMA4A. Variant rs772695095 associates Disease thyroid gland carcinoma. Variant rs12129938 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene PRKAR1A. Variant rs966423 associates Disease thyroid gland carcinoma. Variant rs6793295 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene CDKN1B. Disease thyroid gland carcinoma associates Gene TP53. Gene MIR375 associates Disease thyroid gland carcinoma. Variant rs2466074 associates Disease thyroid gland carcinoma. Gene MIR144 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene RPS20. Gene MIR126 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene ARID1A. Disease thyroid gland carcinoma associates Gene CHEK2. Variant rs2466076 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene CDKN1A. Variant rs2439302 associates Disease thyroid gland carcinoma. Variant rs10122541 associates Disease thyroid gland carcinoma. Variant rs75076352 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene SMARCB1. Disease thyroid gland carcinoma associates Gene ARID1B. Gene MIR222 associates Disease thyroid gland carcinoma. Gene MIR34B associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene PTEN. Variant chr2:173859846 associates Disease thyroid gland carcinoma. Gene MIR182 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene BMPR1A. Disease thyroid gland carcinoma associates Gene EDNRB. Variant rs2289261 associates Disease thyroid gland carcinoma. Variant rs73227498 associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene EDN3. Gene MIR148A associates Disease thyroid gland carcinoma. Disease thyroid gland carcinoma associates Gene SEMA3D. \\nQuestion: Out of the given list, which Gene is associated with hypothyroidism and differentiated thyroid gland carcinoma. Given list is: PNPLA3, RELN, RP1, STAT4, VAV3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989705.5655184}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f4cec6582db39f193968378454978f1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f4cec6582db39f193968378454978f1/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f4cec6582db39f193968378454978f1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f9a400a3358cfbc45f68869f43b5892/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f9a400a3358cfbc45f68869f43b5892/metadata.json new file mode 100644 index 0000000..f69c13b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f9a400a3358cfbc45f68869f43b5892/metadata.json @@ -0,0 +1 @@ +{"duration": 0.568373441696167, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with systemic scleroderma and Sjogren's syndrome. Given list is: KITLG, STAT4, SLC14A2, COL22A1, TDP2\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047944.9313018}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f9a400a3358cfbc45f68869f43b5892/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f9a400a3358cfbc45f68869f43b5892/output.pkl Binary files differnew file mode 100644 index 0000000..8a32a22 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2f9a400a3358cfbc45f68869f43b5892/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2fa8893a195b7bf026b43b7d98c92164/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2fa8893a195b7bf026b43b7d98c92164/metadata.json new file mode 100644 index 0000000..416b06f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2fa8893a195b7bf026b43b7d98c92164/metadata.json @@ -0,0 +1 @@ +{"duration": 10.784735679626465, "input_args": {"instruction": "'Context: Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs1057520012 associates Disease lung adenocarcinoma. Variant rs1057519984 associates Disease lung adenocarcinoma. Variant rs1057519985 associates Disease lung adenocarcinoma. Variant rs1057519982 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs1057519989 associates Disease lung adenocarcinoma. Variant rs1057519986 associates Disease lung adenocarcinoma. Variant rs1057519981 associates Disease lung adenocarcinoma. Variant rs1057520017 associates Disease lung adenocarcinoma. Variant rs1057519988 associates Disease lung adenocarcinoma. Variant rs1057520003 associates Disease lung adenocarcinoma. Variant rs1057519987 associates Disease lung adenocarcinoma. Variant rs1057520004 associates Disease lung adenocarcinoma. Variant rs1057520005 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs1057520002 associates Disease lung adenocarcinoma. Variant rs1057520001 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs1057519881 associates Disease lung adenocarcinoma. Variant rs1057520006 associates Disease lung adenocarcinoma. Variant rs1057520008 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs1057519045 associates Disease lung adenocarcinoma. Variant rs28408315 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs1057519932 associates Disease lung adenocarcinoma. Variant rs530941076 associates Disease lung adenocarcinoma. Variant rs1057519895 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs1057520007 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs1057519923 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs1057519934 associates Disease lung adenocarcinoma. Variant rs1057519922 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs1057519854 associates Disease lung adenocarcinoma. Variant rs1057519879 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs1057519918 associates Disease lung adenocarcinoma. Variant rs5879422 associates Disease lung adenocarcinoma. Variant rs1057519920 associates Disease lung adenocarcinoma. Variant rs786201419 associates Disease lung adenocarcinoma. Variant rs866775781 associates Disease lung adenocarcinoma. Variant rs1057519935 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs1057519782 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs397507484 associates Disease lung adenocarcinoma. Variant rs1057519785 associates Disease lung adenocarcinoma. Variant rs1057519921 associates Disease lung adenocarcinoma. Variant rs104894230 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs1057519933 associates Disease lung adenocarcinoma. Variant rs1057519816 associates Disease lung adenocarcinoma. Variant rs1057519883 associates Disease lung adenocarcinoma. Variant rs1057519926 associates Disease lung adenocarcinoma. Variant rs1057519928 associates Disease lung adenocarcinoma. Variant rs1057519962 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs1057519990 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs1057519786 associates Disease lung adenocarcinoma. Variant rs1057519876 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Disease interstitial lung disease associates Gene TERT. Variant rs2076295 associates Disease interstitial lung disease. Variant rs116483731 associates Disease interstitial lung disease. Variant rs35705950 associates Disease interstitial lung disease. Variant rs2736100 associates Disease interstitial lung disease. Variant rs12702634 associates Disease interstitial lung disease. Variant rs116906005 associates Disease interstitial lung disease. Variant rs561398374 associates Disease interstitial lung disease. Variant rs6631122 associates Disease interstitial lung disease. Variant rs73199442 associates Disease interstitial lung disease. Variant rs2034650 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene OFD1. Variant rs4727443 associates Disease interstitial lung disease. Variant rs6886640 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NKX2-1. Variant rs1278769 associates Disease interstitial lung disease. Variant rs1981997 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene IL2RA. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene IL2RB. Disease interstitial lung disease associates Gene TP53. Variant rs6477542 associates Disease interstitial lung disease. Variant rs12610495 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene AP3B1. Disease interstitial lung disease associates Gene HLA-B. Variant rs11191865 associates Disease interstitial lung disease. Variant rs7934606 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA1. Variant rs912535 associates Disease interstitial lung disease. Variant rs2609255 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene COL3A1. Disease interstitial lung disease associates Gene CSF2RB. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene STXBP2. Disease interstitial lung disease associates Gene CSF2RA. Disease interstitial lung disease associates Gene SFTPA2. Disease interstitial lung disease associates Gene MCIDAS. Disease interstitial lung disease associates Gene ASAH1. Variant rs6793295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPB. Variant rs2957316 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene STAT3. Disease interstitial lung disease associates Gene SFTPC. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene DNAAF3. Disease interstitial lung disease associates Gene DNAAF4. Disease interstitial lung disease associates Gene PIK3CG. Disease interstitial lung disease associates Gene SLC26A9. Disease interstitial lung disease associates Gene HLA-DRB1. Disease interstitial lung disease associates Gene TOM1. Disease interstitial lung disease associates Gene DNAAF5. Disease interstitial lung disease associates Gene DNAAF11. Disease interstitial lung disease associates Gene ODAD2. Disease interstitial lung disease associates Gene CTC1. Disease interstitial lung disease associates Gene FOXP3. Disease interstitial lung disease associates Gene TGFB1. Disease interstitial lung disease associates Gene PTPN22. Disease interstitial lung disease associates Gene DNAAF2. Disease interstitial lung disease associates Gene DNAAF6. Disease interstitial lung disease associates Gene STN1. Disease interstitial lung disease associates Gene SLC6A14. Disease interstitial lung disease associates Gene IRF5. Disease interstitial lung disease associates Gene DKC1. Gene MIR142 associates Disease interstitial lung disease. Gene MIR200C associates Disease interstitial lung disease. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and interstitial lung disease. Given list is: TERT, YLPM1, FTO, SHTN1, IL23R'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048357.6630352}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2fa8893a195b7bf026b43b7d98c92164/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2fa8893a195b7bf026b43b7d98c92164/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/2fa8893a195b7bf026b43b7d98c92164/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/306792780acd759bc4d164b948d6d389/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/306792780acd759bc4d164b948d6d389/metadata.json new file mode 100644 index 0000000..7f9ba1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/306792780acd759bc4d164b948d6d389/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4677400588989258, "input_args": {"instruction": "'Context: Variant rs149014140 associates Disease thoracic aortic aneurysm. Variant rs148927240 associates Disease thoracic aortic aneurysm. Variant rs35766612 associates Disease thoracic aortic aneurysm. Variant rs55633527 associates Disease thoracic aortic aneurysm.. Variant rs4074718 associates Disease thoracic aortic aneurysm. Variant rs4073288 associates Disease thoracic aortic aneurysm. Variant rs1036476 associates Disease thoracic aortic aneurysm. Variant rs78851735 associates Disease thoracic aortic aneurysm. Variant rs773847667 associates Disease thoracic aortic aneurysm. Variant rs7904519 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene HLA-B. Disease thoracic aortic aneurysm associates Gene ATP6V1A. Disease thoracic aortic aneurysm associates Gene B3GALT6. Disease thoracic aortic aneurysm associates Gene FBXW11. Disease thoracic aortic aneurysm associates Gene ACTL6A. Disease thoracic aortic aneurysm associates Gene MYH11. Disease thoracic aortic aneurysm associates Gene FBN1. Disease thoracic aortic aneurysm associates Gene MMP23B. Disease thoracic aortic aneurysm associates Gene SVBP. Disease thoracic aortic aneurysm associates Gene VPS37D. Disease thoracic aortic aneurysm associates Gene TGFBR1. Disease thoracic aortic aneurysm associates Gene WASF1. Disease thoracic aortic aneurysm associates Gene ACTL6B. Disease thoracic aortic aneurysm associates Gene LOX. Disease thoracic aortic aneurysm associates Gene ANGPTL6. Disease thoracic aortic aneurysm associates Gene TGFB2. Disease thoracic aortic aneurysm associates Gene FBN2. Disease thoracic aortic aneurysm associates Gene GATA5. Disease thoracic aortic aneurysm associates Gene ADAMTS19. Disease thoracic aortic aneurysm associates Gene WDFY3. Disease thoracic aortic aneurysm associates Gene COL1A1. Disease thoracic aortic aneurysm associates Gene ACTA2. Disease thoracic aortic aneurysm associates Gene SMAD6. Disease thoracic aortic aneurysm associates Gene BCAS3. Disease thoracic aortic aneurysm associates Gene TNRC6B. Disease thoracic aortic aneurysm associates Gene BAP1. Disease thoracic aortic aneurysm associates Gene SLC12A2. Disease thoracic aortic aneurysm associates Gene HTT. Disease thoracic aortic aneurysm associates Gene TGFB3. Disease thoracic aortic aneurysm associates Gene FBLN5. Disease thoracic aortic aneurysm associates Gene SLC2A10. Disease thoracic aortic aneurysm associates Gene UBE4B. Gene MIR29B2 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene HSPG2. Disease thoracic aortic aneurysm associates Gene KCNAB2. Disease thoracic aortic aneurysm associates Gene COL5A2. Disease thoracic aortic aneurysm associates Gene MBTPS2. Disease thoracic aortic aneurysm associates Gene FKBP6. Disease thoracic aortic aneurysm associates Gene MAPK8IP3. Disease thoracic aortic aneurysm associates Gene UBR7. Disease thoracic aortic aneurysm associates Gene SMAD2. Disease thoracic aortic aneurysm associates Gene COL3A1. Disease thoracic aortic aneurysm associates Gene TBL2. Disease thoracic aortic aneurysm associates Gene NKX2-5. Gene MIR29B1 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene ALG5. Disease thoracic aortic aneurysm associates Gene COL1A2. Disease thoracic aortic aneurysm associates Gene ALG9. Disease thoracic aortic aneurysm associates Gene GTF2IRD1. Disease thoracic aortic aneurysm associates Gene METTL27. Disease thoracic aortic aneurysm associates Gene TGFBR3. Disease thoracic aortic aneurysm associates Gene ANKRD17. Gene MIR1-2 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene COL5A1. Disease thoracic aortic aneurysm associates Gene TCF20. Disease thoracic aortic aneurysm associates Gene ALDH1A2. Variant rs4936098 associates Disease abdominal aortic aneurysm. Variant rs55958997 associates Disease abdominal aortic aneurysm. Variant rs118039278 associates Disease abdominal aortic aneurysm. Variant rs116390453 associates Disease abdominal aortic aneurysm. Variant rs3176336 associates Disease abdominal aortic aneurysm. Variant rs58749629 associates Disease abdominal aortic aneurysm.. Variant rs113626898 associates Disease abdominal aortic aneurysm. Variant rs35254673 associates Disease abdominal aortic aneurysm. Variant rs964184 associates Disease abdominal aortic aneurysm. Variant rs1795061 associates Disease abdominal aortic aneurysm. Variant rs2383207 associates Disease abdominal aortic aneurysm. Variant rs4401144 associates Disease abdominal aortic aneurysm. Variant rs2836411 associates Disease abdominal aortic aneurysm. Variant rs193181528 associates Disease abdominal aortic aneurysm. Variant rs9316871 associates Disease abdominal aortic aneurysm. Variant rs429358 associates Disease abdominal aortic aneurysm. Variant rs73149487 associates Disease abdominal aortic aneurysm. Variant rs602633 associates Disease abdominal aortic aneurysm. Variant rs11591147 associates Disease abdominal aortic aneurysm. Variant rs1466535 associates Disease abdominal aortic aneurysm. Variant rs1412445 associates Disease abdominal aortic aneurysm. Variant rs10808546 associates Disease abdominal aortic aneurysm. Variant rs6511720 associates Disease abdominal aortic aneurysm. Variant rs10985349 associates Disease abdominal aortic aneurysm. Variant rs12133641 associates Disease abdominal aortic aneurysm. Variant rs7025486 associates Disease abdominal aortic aneurysm. Variant rs10757274 associates Disease abdominal aortic aneurysm. Variant rs10023907 associates Disease abdominal aortic aneurysm. \\nQuestion: Out of the given list, which Variant is associated with thoracic aortic aneurysm and abdominal aortic aneurysm. Given list is: rs1642764, rs595244, rs139606545, rs12077210, rs12917707'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050476.6121783}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/306792780acd759bc4d164b948d6d389/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/306792780acd759bc4d164b948d6d389/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/306792780acd759bc4d164b948d6d389/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30be9126f94eaebf202f223a451c5040/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30be9126f94eaebf202f223a451c5040/metadata.json new file mode 100644 index 0000000..71f89c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30be9126f94eaebf202f223a451c5040/metadata.json @@ -0,0 +1 @@ +{"duration": 5.296802043914795, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and estrogen-receptor negative breast cancer. Given list is: TERT, TNFSF15, NTM, IGF2BP2, STN1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989580.6482127}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30be9126f94eaebf202f223a451c5040/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30be9126f94eaebf202f223a451c5040/output.pkl Binary files differnew file mode 100644 index 0000000..ba862ca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30be9126f94eaebf202f223a451c5040/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30c20dd62fb08d1c8e34b9fb8161bd00/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30c20dd62fb08d1c8e34b9fb8161bd00/metadata.json new file mode 100644 index 0000000..149798b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30c20dd62fb08d1c8e34b9fb8161bd00/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6595852375030518, "input_args": {"instruction": "\"Context: Disease Takayasu's arteritis associates Gene HLA-DQB2. Disease Takayasu's arteritis associates Gene ABHD16A. Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene TRIM26. Disease Takayasu's arteritis associates Gene CCHCR1. Disease Takayasu's arteritis associates Gene RPS9. Disease Takayasu's arteritis associates Gene PSORS1C1. Disease Takayasu's arteritis associates Gene RNF5. Variant rs62392216 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene MSH5. Disease Takayasu's arteritis associates Gene PTK2B. Disease Takayasu's arteritis associates Gene TRIM40. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant rs17193507 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Variant rs11666543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DOB. Disease Takayasu's arteritis associates Gene TRIM31. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VWA7. Variant chr6:31570670 associates Disease Takayasu's arteritis. Variant rs117298325 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Variant rs76457959 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G5C. Variant rs1713450 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene BAG6. Variant rs2322599 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G5B. Disease Takayasu's arteritis associates Gene GPANK1. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs9266745 associates Disease Takayasu's arteritis. Disease myelodysplastic syndrome associates Gene ERCC4. Disease myelodysplastic syndrome associates Gene XRCC2. Variant rs1057519960 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51C. Variant rs387906631 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS19. Variant rs373145711 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Disease myelodysplastic syndrome associates Gene DKC1. Disease myelodysplastic syndrome associates Gene RUNX1. Disease myelodysplastic syndrome associates Gene RAD51. Gene MIR181A2 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Gene MIR181A1 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS17. Disease myelodysplastic syndrome associates Gene GATA1. Disease myelodysplastic syndrome associates Gene DNAJC21. Variant rs121913250 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene SMARCD2. Disease myelodysplastic syndrome associates Gene RPA1. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs121913500 associates Disease myelodysplastic syndrome. Gene MIR181B2 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs121912651 associates Disease myelodysplastic syndrome. Variant rs121913237 associates Disease myelodysplastic syndrome. Variant rs1576745225 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA2. Disease myelodysplastic syndrome associates Gene RPS10. Disease myelodysplastic syndrome associates Gene TAF2. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs193303018 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs769081887 associates Disease myelodysplastic syndrome. Variant rs12203592 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CDKN2A. Disease myelodysplastic syndrome associates Gene PTPN11. Variant rs104894230 associates Disease myelodysplastic syndrome. Gene MIR145 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS27. Disease myelodysplastic syndrome associates Gene SAMD9L. Disease myelodysplastic syndrome associates Gene FANCD2. Disease myelodysplastic syndrome associates Gene RPS7. Variant rs752746786 associates Disease myelodysplastic syndrome. Variant rs78898975 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS29. Variant rs121434596 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS15A. Disease myelodysplastic syndrome associates Gene CEP57. Variant rs147001633 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPS14. Variant rs1203207717 associates Disease myelodysplastic syndrome. Gene MIR17 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Gene MIR143 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CHEK2. Gene MIR1-2 associates Disease myelodysplastic syndrome. \\nQuestion: Out of the given list, which Gene is associated with Takayasu's arteritis and myelodysplastic syndrome. Given list is: CCDC33, PCDH15, RBFOX1, HLA-B, ERAP1\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989717.415878}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30c20dd62fb08d1c8e34b9fb8161bd00/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30c20dd62fb08d1c8e34b9fb8161bd00/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/30c20dd62fb08d1c8e34b9fb8161bd00/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3110f3fb3ca602df52db8749fbbefdee/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3110f3fb3ca602df52db8749fbbefdee/metadata.json new file mode 100644 index 0000000..fefdcc3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3110f3fb3ca602df52db8749fbbefdee/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6134815216064453, "input_args": {"instruction": "'Context: Disease autosomal recessive nonsyndromic deafness 21 isa Disease autosomal recessive nonsyndromic deafness. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene PERP. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene KRT16. Disease keratosis associates Gene KANK2. Disease keratosis presents Symptom Deafness. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene GJA1. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene SLURP1. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene GJB6. Disease keratosis associates Gene GJB3. Disease keratosis localizes Anatomy external ear. Disease keratosis associates Gene SASH1. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene KRT6C. Disease keratosis localizes Anatomy mucosa of larynx. Disease keratosis resembles Disease auditory system disease. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene VPS33B. Disease keratosis associates Gene KRT6A. Disease keratosis localizes Anatomy laryngeal vocal fold. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene SMARCAD1. Disease keratosis associates Gene DSG1. Disease keratosis associates Gene KDSR. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene SERPINB7. Disease keratosis presents Symptom Hoarseness. Disease keratosis associates Gene CAST. \\nQuestion: Out of the given list, which Variant is associated with age-related hearing impairment and keratinocyte carcinoma\"@e. Given list is: rs259919, rs2503199, rs325485, rs1126809, rs229541'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050488.842732}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3110f3fb3ca602df52db8749fbbefdee/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3110f3fb3ca602df52db8749fbbefdee/output.pkl Binary files differnew file mode 100644 index 0000000..223b78c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3110f3fb3ca602df52db8749fbbefdee/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/311b3ba1dce0f991c968cbe7e6b33e8f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/311b3ba1dce0f991c968cbe7e6b33e8f/metadata.json new file mode 100644 index 0000000..d1a4be2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/311b3ba1dce0f991c968cbe7e6b33e8f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5860676765441895, "input_args": {"instruction": "'Context: Variant HLA-B*27 associates Disease anterior uveitis. Variant rs114102658 associates Disease anterior uveitis. Variant rs116488202 associates Disease anterior uveitis. Variant HLA-B27 associates Disease anterior uveitis. Variant rs149567432 associates Disease anterior uveitis. Variant rs4672507 associates Disease anterior uveitis. Variant rs115879499 associates Disease anterior uveitis. Variant rs2032890 associates Disease anterior uveitis. Disease anterior uveitis associates Gene IL23R. Disease anterior uveitis associates Gene ERAP1. Disease ontology identifier of anterior uveitis is DOID:1407. Variant rs79755370 associates Disease anterior uveitis. Disease spondyloarthropathy resembles Disease anterior uveitis. Disease anterior uveitis localizes Anatomy sacro-iliac joint. Compound (3S,6S,9S,12S,15S,18S,21S,24S,30S,33S)-30-ethyl-33-[(1R,2R,4E)-1-hydroxy-2-methylhepta-4,6-dienyl]-1,4,7,10,12,15,19,25,28-nonamethyl-6,9,18,24-tetrakis(2-methylpropyl)-3,21-di(propan-2-yl)-1,4,7,10,13,16,19,22,25,28,31-undecazacyclotritriacontane-2,5,8,11,14,17,20,23,26,29,32-undecone treats Disease anterior uveitis. Disease anterior uveitis localizes Anatomy anterior segment of eyeball. Disease anterior uveitis presents Symptom Eye Manifestations. Disease anterior uveitis presents Symptom Back Pain. Disease anterior uveitis resembles Disease reactive arthritis. Disease anterior uveitis resembles Disease endophthalmitis.. Disease anterior uveitis presents Symptom Vision Disorders. Compound Fusidic Acid treats Disease anterior uveitis. Disease anterior uveitis localizes Anatomy anterior chamber of eyeball. Disease scleritis resembles Disease anterior uveitis. Disease anterior uveitis localizes Anatomy eye trabecular meshwork. Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene IL12B. Disease ankylosing spondylitis associates Gene TNFRSF1A. Disease ankylosing spondylitis associates Gene IL1A. Disease ankylosing spondylitis associates Gene IL6R. Variant rs12141575 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA1. Disease ankylosing spondylitis associates Gene IL17A. Gene MIR10B associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R1. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs6556416 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R2. Variant rs116488202 associates Disease ankylosing spondylitis. Variant rs4676410 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA2. Disease ankylosing spondylitis associates Gene IL27. Gene MIR146A associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene USP8. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs61752717 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene ERAP1. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs11249215 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Variant rs117486637 associates Disease ankylosing spondylitis. Variant rs378108 associates Disease ankylosing spondylitis. Variant rs6871626 associates Disease ankylosing spondylitis. Gene MIR21 associates Disease ankylosing spondylitis. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs27529 associates Disease ankylosing spondylitis. Gene MIR29A associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene MEFV. Disease ankylosing spondylitis associates Gene KIF21B. Variant rs13001372 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene ERAP2. Disease ankylosing spondylitis associates Gene BACH2. Variant rs2910686 associates Disease ankylosing spondylitis. Variant rs10045403 associates Disease ankylosing spondylitis. \\nQuestion: Out of the given list, which Gene is associated with anterior uveitis and ankylosing spondylitis. Given list is: SYT14, TNFSF15, UGT1A8, HBB, ERAP1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048125.5214496}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/311b3ba1dce0f991c968cbe7e6b33e8f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/311b3ba1dce0f991c968cbe7e6b33e8f/output.pkl Binary files differnew file mode 100644 index 0000000..aa5a05f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/311b3ba1dce0f991c968cbe7e6b33e8f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3147233bec9367e9330d46ccd4d8010e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3147233bec9367e9330d46ccd4d8010e/metadata.json new file mode 100644 index 0000000..2710c61 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3147233bec9367e9330d46ccd4d8010e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6286816596984863, "input_args": {"instruction": "'Context: Variant rs11574914 associates Disease rheumatoid arthritis. Variant rs4936059 associates Disease rheumatoid arthritis. Variant rs6705628 associates Disease rheumatoid arthritis. Variant rs72634030 associates Disease rheumatoid arthritis. Variant rs35139284 associates Disease rheumatoid arthritis. Variant rs9268839 associates Disease rheumatoid arthritis. Variant rs4602043 associates Disease rheumatoid arthritis. Variant rs12467084 associates Disease rheumatoid arthritis. Variant rs149041927 associates Disease rheumatoid arthritis. Variant rs10797431 associates Disease rheumatoid arthritis. Variant rs73194058 associates Disease rheumatoid arthritis. Variant rs35156883 associates Disease rheumatoid arthritis. Variant rs17604670 associates Disease rheumatoid arthritis. Variant rs12506688 associates Disease rheumatoid arthritis. Variant rs775728920 associates Disease rheumatoid arthritis. Variant rs13192471 associates Disease rheumatoid arthritis. Variant rs6910071 associates Disease rheumatoid arthritis. Variant rs11594656 associates Disease rheumatoid arthritis. Variant rs1566328963 associates Disease rheumatoid arthritis. Variant rs6920220 associates Disease rheumatoid arthritis. Variant rs34030880 associates Disease rheumatoid arthritis. Variant rs12379034 associates Disease rheumatoid arthritis. Variant rs9275428 associates Disease rheumatoid arthritis. Variant rs80202727 associates Disease rheumatoid arthritis. Variant rs3184504 associates Disease rheumatoid arthritis. Variant rs1355208 associates Disease rheumatoid arthritis. Variant rs9269234 associates Disease rheumatoid arthritis. Variant rs138790505 associates Disease rheumatoid arthritis. Variant rs4305317 associates Disease rheumatoid arthritis. Variant rs113066392 associates Disease rheumatoid arthritis. Variant rs77331626 associates Disease rheumatoid arthritis. Variant rs1547233 associates Disease rheumatoid arthritis. Variant rs35677470 associates Disease rheumatoid arthritis. Variant rs35926684 associates Disease rheumatoid arthritis. Variant rs4602367 associates Disease rheumatoid arthritis. Variant rs9296015 associates Disease rheumatoid arthritis. Variant rs10790268 associates Disease rheumatoid arthritis. Variant rs6712515 associates Disease rheumatoid arthritis. Variant rs7320598 associates Disease rheumatoid arthritis. Variant rs3806624 associates Disease rheumatoid arthritis. Variant rs149253747 associates Disease rheumatoid arthritis. Variant rs13426947 associates Disease rheumatoid arthritis. Variant rs11933540 associates Disease rheumatoid arthritis. Variant rs1005753 associates Disease rheumatoid arthritis. Variant rs11915402 associates Disease rheumatoid arthritis. Variant rs2664035 associates Disease rheumatoid arthritis. Variant rs9603618 associates Disease rheumatoid arthritis. Variant rs199894206 associates Disease rheumatoid arthritis. Variant rs142469968 associates Disease rheumatoid arthritis. Variant rs12413578 associates Disease rheumatoid arthritis. Variant rs9603616 associates Disease rheumatoid arthritis. Variant rs1044690 associates Disease rheumatoid arthritis. Variant rs77465633 associates Disease rheumatoid arthritis. Variant rs56139217 associates Disease rheumatoid arthritis. Variant rs4622308 associates Disease rheumatoid arthritis. Variant rs2203098 associates Disease rheumatoid arthritis. Variant rs11673987 associates Disease rheumatoid arthritis. Variant rs58721818 associates Disease rheumatoid arthritis. Variant rs74956615 associates Disease rheumatoid arthritis. Variant rs147622113 associates Disease rheumatoid arthritis. Variant rs13103285 associates Disease rheumatoid arthritis. Variant rs34695944 associates Disease rheumatoid arthritis. Variant rs79145843 associates Disease rheumatoid arthritis. Variant rs9693589 associates Disease rheumatoid arthritis. Variant rs111469885 associates Disease rheumatoid arthritis. Variant rs2306848 associates Disease rheumatoid arthritis. Variant rs1217403 associates Disease rheumatoid arthritis. Variant rs28411352 associates Disease rheumatoid arthritis. Variant rs1660322 associates Disease rheumatoid arthritis. Variant rs34046593 associates Disease rheumatoid arthritis. Variant rs148363003 associates Disease rheumatoid arthritis. Variant rs4452313 associates Disease rheumatoid arthritis. Variant rs4963581 associates Disease rheumatoid arthritis. Variant rs8043085 associates Disease rheumatoid arthritis. Variant rs13054355 associates Disease rheumatoid arthritis. Variant rs35161626 associates Disease vitiligo. Variant rs4766578 associates Disease vitiligo. Variant rs4908760 associates Disease vitiligo. Variant rs9271597 associates Disease vitiligo. Variant rs13076312 associates Disease vitiligo. Variant rs145954018 associates Disease vitiligo.. Variant rs117744081 associates Disease vitiligo. Variant rs4268748 associates Disease vitiligo. Variant rs3814231 associates Disease vitiligo. Variant rs12771452 associates Disease vitiligo. Variant rs12421615 associates Disease vitiligo. Variant rs59374417 associates Disease vitiligo. Variant rs6059655 associates Disease vitiligo. Variant rs3806156 associates Disease vitiligo. Variant rs2476601 associates Disease vitiligo. Variant rs13136820 associates Disease vitiligo. Variant rs5952553 associates Disease vitiligo. Variant rs638893 associates Disease vitiligo. Variant rs6583331 associates Disease vitiligo. Variant rs1635168 associates Disease vitiligo. Variant rs11966200 associates Disease vitiligo. Variant rs16872571 associates Disease vitiligo. Variant rs41342147 associates Disease vitiligo. Variant rs1393350 associates Disease vitiligo. Variant rs12203592 associates Disease vitiligo. Variant rs4308124 associates Disease vitiligo. Variant rs2456973 associates Disease vitiligo. Variant rs6012953 associates Disease vitiligo. Variant rs9468925 associates Disease vitiligo. Variant rs561079 associates Disease vitiligo. Variant rs34346645 associates Disease vitiligo. Variant rs757850683 associates Disease vitiligo. Variant rs8192917 associates Disease vitiligo. Variant rs16843742 associates Disease vitiligo. Variant rs3757247 associates Disease vitiligo. Variant rs60131261 associates Disease vitiligo. Variant rs12482904 associates Disease vitiligo. Variant rs4822024 associates Disease vitiligo. Variant rs11079035 associates Disease vitiligo. Variant rs3823355 associates Disease vitiligo. Variant rs2111485 associates Disease vitiligo. Variant rs301807 associates Disease vitiligo. Variant rs2236313 associates Disease vitiligo. Variant rs9926296 associates Disease vitiligo. Variant rs2017445 associates Disease vitiligo. Variant rs35860234 associates Disease vitiligo. Variant rs1464510 associates Disease vitiligo. Variant rs11021232 associates Disease vitiligo. Variant rs8083511 associates Disease vitiligo. Variant rs4409785 associates Disease vitiligo. Variant rs78521699 associates Disease vitiligo. \\nQuestion: Out of the given list, which Variant is associated with rheumatoid arthritis and vitiligo. Given list is: rs7176508, rs11675342, rs3018362, rs6426833, rs2476601'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048923.8535507}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3147233bec9367e9330d46ccd4d8010e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3147233bec9367e9330d46ccd4d8010e/output.pkl Binary files differnew file mode 100644 index 0000000..aef1deb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3147233bec9367e9330d46ccd4d8010e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/31eeb6bc2c6133a07952a9dd1da9955a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/31eeb6bc2c6133a07952a9dd1da9955a/metadata.json new file mode 100644 index 0000000..1b438bd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/31eeb6bc2c6133a07952a9dd1da9955a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6016743183135986, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene HLA-DQB1. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene HLA-DMB. Disease allergic rhinitis associates Gene TNFSF4. Disease allergic rhinitis associates Gene IL1B. Disease allergic rhinitis associates Gene IL1RL1. Disease allergic rhinitis associates Gene PRDM16. Disease allergic rhinitis associates Gene IL13. Disease allergic rhinitis associates Gene PTPRK. Variant rs62404084 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Disease allergic rhinitis associates Gene TNFRSF11A. Variant rs5743618 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFAIP8. Variant rs6738825 associates Disease allergic rhinitis. Variant rs3793079 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene INPP5D. Variant rs61907713 associates Disease allergic rhinitis. Variant rs61977073 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HSPE1-MOB4. Variant rs17033015 associates Disease allergic rhinitis. Variant rs16858573 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene LPP. Disease allergic rhinitis associates Gene NFKB1. Variant rs5743604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene MFSD13A. Variant rs11680788 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs11169225 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Disease allergic rhinitis associates Gene SPSB1. Variant chr6:32631116 associates Disease allergic rhinitis. Variant rs144829310 associates Disease allergic rhinitis. Variant rs111371454 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD51B. Variant rs61839660 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene PHF19. Disease allergic rhinitis associates Gene IRF1. Disease allergic rhinitis associates Gene ZPBP2. Variant rs17294280 associates Disease allergic rhinitis. Variant rs13277355 associates Disease allergic rhinitis. Variant rs9271701 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ZDHHC12. Variant rs12887759 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Variant rs981625 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene COL15A1. Variant rs6479828 associates Disease allergic rhinitis. Variant rs9297768 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Variant rs17133587 associates Disease allergic rhinitis. Variant rs63406760 associates Disease allergic rhinitis. Variant rs138050288 associates Disease allergic rhinitis. Variant rs3116590 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Variant rs147725790 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL18R1. Variant rs9442514 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ALOX15. Variant rs12365699 associates Disease allergic rhinitis. Variant rs28690449 associates Disease allergic rhinitis. Variant rs7650683 associates Disease allergic rhinitis. Variant rs12784963 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Variant rs61192126 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Variant rs61815559 associates Disease allergic rhinitis. Disease psoriasis associates Gene HLA-B. Variant chr1: 152591953 associates Disease psoriasis. Variant chr1: 8286009 associates Disease psoriasis. Variant chr6: 138197824 associates Disease psoriasis. Variant chr12: 56741228 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DQB1. Variant chr6: 20689945 associates Disease psoriasis. Variant chr19: 10886206 associates Disease psoriasis. Variant chr11: 128391937 associates Disease psoriasis. Variant chr18: 51816394 associates Disease psoriasis. Variant chr5: 96118852 associates Disease psoriasis. Variant chr5: 150469973 associates Disease psoriasis. Variant chr5: 158829527 associates Disease psoriasis. Variant chr3: 16996623 associates Disease psoriasis. Variant chr6: 577820 associates Disease psoriasis. Variant chr10: 81043743 associates Disease psoriasis. Variant chr1: 25291010 associates Disease psoriasis. Variant chr6: 159506600 associates Disease psoriasis. Variant chr9: 110792282 associates Disease psoriasis. Variant chr6: 111929862 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DRB1. Variant chr5: 131996445 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant chr10: 75601596 associates Disease psoriasis. Variant chr6:32166618 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant chr6: 30916259 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant chr17: 78175483 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant chr13: 45321731 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs12130219 associates Disease psoriasis. Variant chr19: 10463118 associates Disease psoriasis. Variant chr7: 37385365 associates Disease psoriasis. Variant chr16: 11354091 associates Disease psoriasis. Variant rs59827721 associates Disease psoriasis. Variant rs465969 associates Disease psoriasis. Variant chr16: 31021078 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs55823223 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis. Variant rs4795067 associates Disease psoriasis. Variant chr1: 24518206 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant chr1: 67713346 associates Disease psoriasis. Disease psoriasis associates Gene IL12B. Variant chr17: 40536396 associates Disease psoriasis. Variant chr11: 109962432 associates Disease psoriasis. Variant rs2076346 associates Disease psoriasis. Variant rs9366778 x rs4959062 associates Disease psoriasis. Variant rs1960278 x rs4947314 associates Disease psoriasis. Variant rs6929464 x rs1265112 associates Disease psoriasis. Variant rs12119179 associates Disease psoriasis. Variant chr3: 189662658 associates Disease psoriasis. Disease psoriasis associates Gene AP5B1. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs1265114 x rs4358666 associates Disease psoriasis. Disease psoriasis associates Gene IFNGR2. Variant rs2524096 x rs28575156 associates Disease psoriasis. Variant rs28894086 x rs1265078 associates Disease psoriasis. Variant rs1265112 x rs4358666 associates Disease psoriasis. Variant rs12445568 associates Disease psoriasis. Variant rs1265067 x rs4358666 associates Disease psoriasis. Variant rs12586317 associates Disease psoriasis. Variant rs1265079 x rs4358666 associates Disease psoriasis. Variant rs610604 associates Disease psoriasis. Variant rs559406 associates Disease psoriasis. Variant rs3130517 x rs12191877 associates Disease psoriasis. Variant rs1265078 x rs2894207 associates Disease psoriasis. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and psoriasis. Given list is: MYH7, ADH1B, MYH7, HLA-B, PKNOX2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048251.4466295}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/31eeb6bc2c6133a07952a9dd1da9955a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/31eeb6bc2c6133a07952a9dd1da9955a/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/31eeb6bc2c6133a07952a9dd1da9955a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/323b753e3f35205697a61875eeeed219/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/323b753e3f35205697a61875eeeed219/metadata.json new file mode 100644 index 0000000..0915708 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/323b753e3f35205697a61875eeeed219/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6970686912536621, "input_args": {"instruction": "'Context: Disease oral cavity cancer associates Gene HLA-DQB1. Disease oral cavity cancer associates Gene GPN1.. Variant rs10851478 associates Disease oral cavity cancer. Variant rs201982221 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. Variant rs8181047 associates Disease oral cavity cancer. Variant rs121909224 associates Disease oral cavity cancer. Variant rs527571090 associates Disease nephrotic syndrome. Variant rs1569495819 associates Disease nephrotic syndrome. Variant rs530318579 associates Disease nephrotic syndrome. Variant rs4642516 associates Disease nephrotic syndrome. Variant rs529211517 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene CCND1. Variant rs1223251037 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ITGA3. Variant rs1601356283 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene HLA-DQB1. Variant rs554480714 associates Disease nephrotic syndrome. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs149560153 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene CRB2. Variant rs1054215531 associates Disease nephrotic syndrome. Variant rs145623004 associates Disease nephrotic syndrome. Variant rs570583897 associates Disease nephrotic syndrome. Variant rs1973174583 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene OSGEP. Disease nephrotic syndrome associates Gene ZFPM2. Variant rs369558225 associates Disease nephrotic syndrome. Variant rs1555331969 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Variant rs2063103741 associates Disease nephrotic syndrome. Variant rs1973238637 associates Disease nephrotic syndrome. Variant rs118203956 associates Disease nephrotic syndrome. Variant rs2016645859 associates Disease nephrotic syndrome. Variant rs4979462 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TP53RK. Variant rs762704370 associates Disease nephrotic syndrome. Variant rs565501407 associates Disease nephrotic syndrome. Gene MIR503 associates Disease nephrotic syndrome. Variant rs140781106 associates Disease nephrotic syndrome. Variant rs959473971 associates Disease nephrotic syndrome. Variant rs2079386835 associates Disease nephrotic syndrome. Variant rs375606039 associates Disease nephrotic syndrome. Variant rs199837675 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Variant rs534522842 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Variant rs1568296260 associates Disease nephrotic syndrome. Variant rs145146218 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A4. Variant rs104886210 associates Disease nephrotic syndrome. Variant rs199506378 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene FN1. Variant rs150183033 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ANLN. Variant rs370860586 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A5. Variant rs2051495579 associates Disease nephrotic syndrome. Variant rs201269631 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ZAP70. Variant rs140511594 associates Disease nephrotic syndrome. Variant rs376983109 associates Disease nephrotic syndrome. Variant rs1589475328 associates Disease nephrotic syndrome. Variant rs2045467851 associates Disease nephrotic syndrome. Variant rs1673255837 associates Disease nephrotic syndrome. Variant rs371914169 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A3. Variant rs9273542 associates Disease nephrotic syndrome. Variant HLA-DQA1*02:01 associates Disease nephrotic syndrome. Variant rs369363545 associates Disease nephrotic syndrome. Variant rs2045394381 associates Disease nephrotic syndrome. Variant rs114203578 associates Disease nephrotic syndrome. Variant rs1412135409 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene CYBC1. Variant rs2068656107 associates Disease nephrotic syndrome. Variant rs145473779 associates Disease nephrotic syndrome. Variant rs10518133 associates Disease nephrotic syndrome. Variant rs386833863 associates Disease nephrotic syndrome. Variant HLA-DQA1*01 associates Disease nephrotic syndrome. Variant rs374099285 associates Disease nephrotic syndrome. \\nQuestion: Out of the given list, which Gene is associated with oral cavity cancer and nephrotic syndrome. Given list is: ARMS2, HLA-DQB1, LOXL1, HLA-B, ACOXL'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989767.2757742}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/323b753e3f35205697a61875eeeed219/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/323b753e3f35205697a61875eeeed219/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/323b753e3f35205697a61875eeeed219/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/329bbad155968a144afb5241608049a1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/329bbad155968a144afb5241608049a1/metadata.json new file mode 100644 index 0000000..0444175 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/329bbad155968a144afb5241608049a1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7462975978851318, "input_args": {"instruction": "'Context: Variant rs6996585 associates Disease thyroid gland papillary carcinoma. Variant rs113488022 associates Disease thyroid gland papillary carcinoma. Variant rs12990503 associates Disease thyroid gland papillary carcinoma. Gene MIR369 associates Disease thyroid gland papillary carcinoma. Variant rs201958469 associates Disease thyroid gland papillary carcinoma. Variant rs148335539 associates Disease thyroid gland papillary carcinoma. Gene MIR361 associates Disease thyroid gland papillary carcinoma. Disease thyroid gland papillary carcinoma associates Gene NKX2-1. Gene MIR182 associates Disease thyroid gland papillary carcinoma. Gene MIR192 associates Disease thyroid gland papillary carcinoma. Gene MIR551B associates Disease thyroid gland papillary carcinoma. Variant rs9858271 associates Disease thyroid gland papillary carcinoma. Gene MIR623 associates Disease thyroid gland papillary carcinoma. Gene MIR375 associates Disease thyroid gland papillary carcinoma. Gene MIR222 associates Disease thyroid gland papillary carcinoma. Variant rs751409106 associates Disease thyroid gland papillary carcinoma. Gene MIR4728 associates Disease thyroid gland papillary carcinoma. Gene MIR141 associates Disease thyroid gland papillary carcinoma. Gene MIR718 associates Disease thyroid gland papillary carcinoma. Gene MIR20A associates Disease thyroid gland papillary carcinoma. Gene MIR595 associates Disease thyroid gland papillary carcinoma. Variant rs6908626 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PROP1. Disease hypothyroidism associates Gene CLPB. Variant chr14:81143695 associates Disease hypothyroidism. Variant rs370475698 associates Disease hypothyroidism. Variant rs61759532 associates Disease hypothyroidism. Variant rs1266904735 associates Disease hypothyroidism. Disease hypothyroidism associates Gene HPD. Variant rs61101437 associates Disease hypothyroidism. Variant rs6992869 associates Disease hypothyroidism. Variant rs6914622 associates Disease hypothyroidism. Variant rs9273370 associates Disease hypothyroidism. Variant rs11406335 associates Disease hypothyroidism. Variant rs4823073 associates Disease hypothyroidism. Variant rs114378220 associates Disease hypothyroidism. Variant rs3850765 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PTCH1. Variant rs9562955 associates Disease hypothyroidism. Variant rs113229608 associates Disease hypothyroidism. Variant rs3184504 associates Disease hypothyroidism. Variant rs11822813 associates Disease hypothyroidism. Disease hypothyroidism associates Gene MMP23B. Variant rs11666808 associates Disease hypothyroidism. Variant rs61778693 associates Disease hypothyroidism. Variant rs926103 associates Disease hypothyroidism. Variant rs12485900 associates Disease hypothyroidism. Variant rs587777630 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PLAA. Variant rs57033802 associates Disease hypothyroidism. Variant rs6505765 associates Disease hypothyroidism. Variant rs12582330 associates Disease hypothyroidism. Disease hypothyroidism associates Gene INPP5B. Variant rs12482947 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PRLR. Variant rs1599795 associates Disease hypothyroidism. Variant rs4835534 associates Disease hypothyroidism. Variant rs61776678 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PLVAP. Variant rs56818621 associates Disease hypothyroidism. Variant rs1561924 associates Disease hypothyroidism. Variant rs229528 associates Disease hypothyroidism. Variant rs3118469 associates Disease hypothyroidism. Disease hypothyroidism associates Gene BMP6. Variant rs3784099 associates Disease hypothyroidism. Variant rs151289341 associates Disease hypothyroidism. Variant rs12981033 associates Disease hypothyroidism. Variant rs13076468 associates Disease hypothyroidism. Variant rs3847803 associates Disease hypothyroidism. Variant rs1724088 associates Disease hypothyroidism. Variant rs8054578 associates Disease hypothyroidism. Variant rs36019010 associates Disease hypothyroidism. Variant rs17020055 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PIEZO1. Variant rs61877856 associates Disease hypothyroidism. Variant rs1951459 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TSHB. Variant rs229540 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PTEN. Variant rs13281186 associates Disease hypothyroidism. Disease hypothyroidism associates Gene FOXP1. Variant rs13109179 associates Disease hypothyroidism. Variant rs6603785 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PLCH1. Variant rs66749983 associates Disease hypothyroidism. Variant rs371058848 associates Disease hypothyroidism. Variant rs60600003 associates Disease hypothyroidism. Variant rs57145876 associates Disease hypothyroidism. Disease hypothyroidism associates Gene POLR3GL. Variant rs6833591 associates Disease hypothyroidism. Variant rs142063461 associates Disease hypothyroidism. Variant rs9380522 associates Disease hypothyroidism. Disease hypothyroidism associates Gene BRAF. Variant rs143210911 associates Disease hypothyroidism. Variant rs1558700308 associates Disease hypothyroidism. Variant rs9271365 associates Disease hypothyroidism. \\nQuestion: Out of the given list, which Gene is associated with thyroid gland papillary carcinoma and hypothyroidism. Given list is: CLPTM1L, MYBPC3, FAM227B, VAV3, PRNP'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989589.487682}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/329bbad155968a144afb5241608049a1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/329bbad155968a144afb5241608049a1/output.pkl Binary files differnew file mode 100644 index 0000000..1da6216 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/329bbad155968a144afb5241608049a1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32a33466639fa129d3c6a81d353c7ca4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32a33466639fa129d3c6a81d353c7ca4/metadata.json new file mode 100644 index 0000000..ff79370 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32a33466639fa129d3c6a81d353c7ca4/metadata.json @@ -0,0 +1 @@ +{"duration": 7.155431747436523, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and myeloproliferative neoplasm. Given list is: TERT, MST1, OPTN, TNRC18, PSCA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048802.0772567}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32a33466639fa129d3c6a81d353c7ca4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32a33466639fa129d3c6a81d353c7ca4/output.pkl Binary files differnew file mode 100644 index 0000000..8a87397 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32a33466639fa129d3c6a81d353c7ca4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32cb806c9f7e3620f8af0e40eb05550c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32cb806c9f7e3620f8af0e40eb05550c/metadata.json new file mode 100644 index 0000000..6d134f2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32cb806c9f7e3620f8af0e40eb05550c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5559442043304443, "input_args": {"instruction": "'Context: Disease myeloproliferative neoplasm associates Gene TERT. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene RUNX1. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TET2. Disease myeloproliferative neoplasm associates Gene JAK2. Disease myeloproliferative neoplasm associates Gene ATM. Disease myeloproliferative neoplasm associates Gene THPO.. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs17356907 associates Disease estrogen-receptor negative breast cancer. Variant rs16991615 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Disease estrogen-receptor negative breast cancer associates Gene BABAM1. Disease estrogen-receptor negative breast cancer associates Gene ESR1. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene MRTFA. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Variant rs11571833 associates Disease estrogen-receptor negative breast cancer. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs11076805 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TCF7L2. Variant rs35840638 associates Disease estrogen-receptor negative breast cancer. Variant rs11374964 associates Disease estrogen-receptor negative breast cancer. Variant rs616488 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs151198586 associates Disease breast cancer. Gene MYBPC1 marker Disease breast cancer. Gene TEX14 expressedin Disease breast cancer. Gene STAT5A marker Disease breast cancer. Gene BTBD6 marker Disease breast cancer. Gene JAK1 marker Disease breast cancer. Gene DNAJC12 expressedin Disease breast cancer. Variant rs116481522 associates Disease breast cancer. Variant rs1480250917 associates Disease breast cancer. Variant rs151327241 associates Disease breast cancer. Variant rs1481419710 associates Disease breast cancer. Variant rs1218108009 associates Disease breast cancer. Variant rs148061139 associates Disease breast cancer. Gene MYB expressedin Disease breast cancer. Variant rs81002827 associates Disease breast cancer. Gene MZT2A marker Disease breast cancer. Variant rs81002867 associates Disease breast cancer. Variant rs81002814 associates Disease breast cancer. Variant rs28897759 associates Disease breast cancer. Variant rs28897716 associates Disease breast cancer. Variant rs28897710 associates Disease breast cancer. Variant rs28897715 associates Disease breast cancer. Variant rs1801025 associates Disease breast cancer. Variant rs148690585 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs28897755 associates Disease breast cancer. Variant rs141055990 associates Disease breast cancer. Variant rs81002899 associates Disease breast cancer. Variant rs56009889 associates Disease breast cancer. Variant rs141163928 associates Disease breast cancer. Variant rs137853009 associates Disease breast cancer. Variant rs56121817 associates Disease breast cancer. Variant rs81002812 associates Disease breast cancer. Gene XPNPEP3 marker Disease breast cancer. Variant rs1135401859 associates Disease breast cancer. Variant rs4986854 associates Disease breast cancer. Variant rs202072866 associates Disease breast cancer. Variant rs137852986 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Variant rs28897690 associates Disease breast cancer. Variant rs28897717 associates Disease breast cancer. Variant rs141828876 associates Disease breast cancer. Variant rs80116829 associates Disease breast cancer. Variant rs1569104011 associates Disease breast cancer. Variant rs2078107930 associates Disease breast cancer. Variant rs28897753 associates Disease breast cancer. Variant rs81002893 associates Disease breast cancer. Variant rs200640585 associates Disease breast cancer. Variant rs81002806 associates Disease breast cancer. Variant rs41295280 associates Disease breast cancer. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and estrogen-receptor negative breast cancer. Given list is: STAT4, MYH7, BTBD9, ERAP1, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047837.024354}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32cb806c9f7e3620f8af0e40eb05550c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32cb806c9f7e3620f8af0e40eb05550c/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/32cb806c9f7e3620f8af0e40eb05550c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/335af2e651808a429183a636673485d8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/335af2e651808a429183a636673485d8/metadata.json new file mode 100644 index 0000000..14a83eb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/335af2e651808a429183a636673485d8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9841392040252686, "input_args": {"instruction": "'Context: Variant rs1057519830 associates Disease head and neck cancer. Variant rs146795390 associates Disease head and neck cancer. Gene SLC35E2B marker Disease head and neck cancer. Disease head and neck cancer associates Gene CTNNB1. Variant rs762384959 associates Disease head and neck cancer. Variant rs1453414 associates Disease head and neck cancer. Disease head and neck cancer associates Gene HLA-DQB1. Disease head and neck cancer associates Gene COL4A6. Disease head and neck cancer associates Gene ASCC1. Gene SLC39A2 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene CDKN2A. Gene SLC6A15 expressedin Disease head and neck cancer. Variant rs121913344 associates Disease head and neck cancer. Disease head and neck cancer associates Gene MYH11. Disease head and neck cancer associates Gene COL4A5. Variant rs121913231 associates Disease head and neck cancer. Variant rs854936 associates Disease head and neck cancer. Variant rs79767424 associates Disease head and neck cancer. Gene SLC39A1 marker Disease head and neck cancer. Gene SLC44A4 marker Disease head and neck cancer. Gene SLC18B1 marker Disease head and neck cancer. Disease head and neck cancer associates Gene ADH1B. Disease head and neck cancer associates Gene PIK3CA. Disease head and neck cancer associates Gene COL14A1. Disease head and neck cancer associates Gene MDM2. Variant rs3828805 associates Disease head and neck cancer. Disease head and neck cancer associates Gene CHEK2. Gene ACAA1 marker Disease head and neck cancer. Gene SLC26A9 marker Disease head and neck cancer. Variant rs77543610 associates Disease head and neck cancer. Variant rs16879870 associates Disease head and neck cancer. Gene MIR27B associates Disease head and neck cancer. Variant rs2761591 associates Disease head and neck cancer. Gene SLC25A10 marker Disease head and neck cancer. Gene MIR125B1 associates Disease head and neck cancer. Disease head and neck cancer associates Gene TGFBR2. Gene ABCA12 expressedin Disease head and neck cancer. Gene MIR499A associates Disease head and neck cancer. Gene MIR101-1 associates Disease head and neck cancer. Gene MIR363 associates Disease head and neck cancer. Gene MIR101-2 associates Disease head and neck cancer. Gene SLC15A4 marker Disease head and neck cancer. Disease head and neck cancer associates Gene BLM. Gene MIR9-1 associates Disease head and neck cancer. Gene MIR9-2 associates Disease head and neck cancer. Gene MIR181B1 associates Disease head and neck cancer. Gene STXBP1 marker Disease head and neck cancer. Variant rs2641256 associates Disease head and neck cancer. Disease head and neck cancer associates Gene TP53. Gene SLC10A6 expressedin Disease head and neck cancer. Gene ALDH3A1 expressedin Disease head and neck cancer. Gene MIR26B associates Disease head and neck cancer. Disease head and neck cancer associates Gene HABP2. Gene MIR302C associates Disease head and neck cancer. Gene MIR125B2 associates Disease head and neck cancer. Gene PPP1R27 expressedin Disease head and neck cancer. Gene MIR9-3 associates Disease head and neck cancer. Gene CACNA1S expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene PDE11A. Gene SERPINB12 expressedin Disease head and neck cancer. Gene MIR146B associates Disease head and neck cancer. Gene CCT6A marker Disease head and neck cancer. Gene MIR29C associates Disease head and neck cancer. Disease head and neck cancer associates Gene APC. Gene MIR133A1 associates Disease head and neck cancer. Gene MIR302B associates Disease head and neck cancer. Disease head and neck cancer associates Gene SDHB. Variant rs1229984 associates Disease head and neck cancer. Disease head and neck cancer associates Gene FOXE1. Gene UGT1A7 expressedin Disease head and neck cancer. Variant rs104886003 associates Disease head and neck cancer. Gene MIR302A associates Disease head and neck cancer. Gene MIR491 associates Disease head and neck cancer. Gene SERPINB12 marker Disease head and neck cancer. Gene TBC1D17 marker Disease head and neck cancer. Variant rs12203592 associates Disease uveal melanoma. Variant rs1057519853 associates Disease uveal melanoma. Variant rs1057519742 associates Disease uveal melanoma. Variant rs1559588632 associates Disease uveal melanoma. Variant rs452932 associates Disease uveal melanoma. Variant rs1057519961 associates Disease uveal melanoma. Disease uveal melanoma associates Gene HERC2. Variant rs370348 associates Disease uveal melanoma. Variant rs121913492 associates Disease uveal melanoma. Disease uveal melanoma associates Gene BRAF. Gene MIR144 associates Disease uveal melanoma. Variant rs762657413 associates Disease uveal melanoma. Gene MIR454 associates Disease uveal melanoma. Disease uveal melanoma associates Gene TDP1. Disease uveal melanoma associates Gene SF3B1. Disease uveal melanoma associates Gene IRF4. \\nQuestion: Out of the given list, which Gene is associated with head and neck cancer and uveal melanoma. Given list is: ABO, CACNA2D1, PSCA, TERT, SULT1B1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989952.912623}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/335af2e651808a429183a636673485d8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/335af2e651808a429183a636673485d8/output.pkl Binary files differnew file mode 100644 index 0000000..0fd35c1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/335af2e651808a429183a636673485d8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3472e3bc11a215ade3db98b5f5b4772f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3472e3bc11a215ade3db98b5f5b4772f/metadata.json new file mode 100644 index 0000000..a3d1fc6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3472e3bc11a215ade3db98b5f5b4772f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.492389440536499, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Disease cutaneous lupus erythematosus associates Gene CSNK2B. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and cutaneous lupus erythematosus. Given list is: PTPN22, HLA-DQA1, CACNB2, CCDC33, IL2RA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989650.956703}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3472e3bc11a215ade3db98b5f5b4772f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3472e3bc11a215ade3db98b5f5b4772f/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3472e3bc11a215ade3db98b5f5b4772f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3476c4a63185e81a3d94256aebec2e9f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3476c4a63185e81a3d94256aebec2e9f/metadata.json new file mode 100644 index 0000000..e07bb52 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3476c4a63185e81a3d94256aebec2e9f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5511760711669922, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQB1. Disease autoimmune hepatitis associates Gene HLA-DQA1. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Disease ontology identifier of autoimmune hepatitis is DOID:2048. Disease oropharynx cancer associates Gene HLA-DQB1. Disease oropharynx cancer associates Gene ADH1B.. Variant rs189602139 associates Disease oropharynx cancer. Variant rs2523679 associates Disease oropharynx cancer. Variant rs35189640 associates Disease oropharynx cancer. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and oropharynx cancer. Given list is: EYA2, LOXL1, BTBD9, TMEM71, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989647.1209314}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3476c4a63185e81a3d94256aebec2e9f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3476c4a63185e81a3d94256aebec2e9f/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3476c4a63185e81a3d94256aebec2e9f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/34cc636340cf8902912434c8b97e513e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/34cc636340cf8902912434c8b97e513e/metadata.json new file mode 100644 index 0000000..467200c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/34cc636340cf8902912434c8b97e513e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5587306022644043, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with kidney disease and Kuhnt-Junius degeneration. Given list is: CFH, HLA-DQB2, DNMT3A, TNNT2, GATA3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048121.3249862}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/34cc636340cf8902912434c8b97e513e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/34cc636340cf8902912434c8b97e513e/output.pkl Binary files differnew file mode 100644 index 0000000..fece126 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/34cc636340cf8902912434c8b97e513e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/361da7a938d8887efed51d0c0d4858af/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/361da7a938d8887efed51d0c0d4858af/metadata.json new file mode 100644 index 0000000..bcd5747 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/361da7a938d8887efed51d0c0d4858af/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6926641464233398, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oral cavity cancer and pancreatic carcinoma. Given list is: CLPTM1L, CASZ1, AKAP6, HERC2, IL6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989768.9135687}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/361da7a938d8887efed51d0c0d4858af/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/361da7a938d8887efed51d0c0d4858af/output.pkl Binary files differnew file mode 100644 index 0000000..3482277 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/361da7a938d8887efed51d0c0d4858af/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/36df7e14e03637096e2d7b0bda3fa77a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/36df7e14e03637096e2d7b0bda3fa77a/metadata.json new file mode 100644 index 0000000..58f8d73 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/36df7e14e03637096e2d7b0bda3fa77a/metadata.json @@ -0,0 +1 @@ +{"duration": 17.39084219932556, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with inflammatory bowel disease and ankylosing spondylitis. Given list is: HOXD3, HNF1B, TYR, IL23R, TRAF3IP2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988531.1835594}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/36df7e14e03637096e2d7b0bda3fa77a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/36df7e14e03637096e2d7b0bda3fa77a/output.pkl Binary files differnew file mode 100644 index 0000000..a1d7ccc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/36df7e14e03637096e2d7b0bda3fa77a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3840d852713b60f82f04007664f55dd7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3840d852713b60f82f04007664f55dd7/metadata.json new file mode 100644 index 0000000..13a76c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3840d852713b60f82f04007664f55dd7/metadata.json @@ -0,0 +1 @@ +{"duration": 19.14012908935547, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with age related macular degeneration and kidney disease. Given list is: RAD51B, CFH, C1orf127, CASZ1, HAAO'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047757.4039083}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3840d852713b60f82f04007664f55dd7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3840d852713b60f82f04007664f55dd7/output.pkl Binary files differnew file mode 100644 index 0000000..ddb7bfb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3840d852713b60f82f04007664f55dd7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/387dd82fdc9916899eee2af97254b37e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/387dd82fdc9916899eee2af97254b37e/metadata.json new file mode 100644 index 0000000..2e913d9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/387dd82fdc9916899eee2af97254b37e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5993738174438477, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with thyroid gland papillary carcinoma and hypothyroidism. Given list is: CLPTM1L, MYBPC3, FAM227B, VAV3, PRNP'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989587.9035368}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/387dd82fdc9916899eee2af97254b37e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/387dd82fdc9916899eee2af97254b37e/output.pkl Binary files differnew file mode 100644 index 0000000..223a014 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/387dd82fdc9916899eee2af97254b37e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/38c7aac728f77a66736cca69f31f846b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/38c7aac728f77a66736cca69f31f846b/metadata.json new file mode 100644 index 0000000..590af44 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/38c7aac728f77a66736cca69f31f846b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5652487277984619, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with Kawasaki disease and inflammatory bowel disease. Given list is: rs573872, rs2072499, rs1333040, rs1801274, rs3757318'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048862.7876325}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/38c7aac728f77a66736cca69f31f846b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/38c7aac728f77a66736cca69f31f846b/output.pkl Binary files differnew file mode 100644 index 0000000..9c3fa58 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/38c7aac728f77a66736cca69f31f846b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/391012a0a218639a4266526358da0ca4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/391012a0a218639a4266526358da0ca4/metadata.json new file mode 100644 index 0000000..cc93f42 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/391012a0a218639a4266526358da0ca4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6076667308807373, "input_args": {"instruction": "\"Context: Disease allergic rhinitis associates Gene HLA-B. Variant rs11680788 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ABO. Disease allergic rhinitis associates Gene SULT1A1. Variant rs11644510 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene NOS3. Variant rs891058 associates Disease allergic rhinitis. Variant rs111371454 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFSF4. Variant rs11685995 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Variant rs301806 associates Disease allergic rhinitis. Variant rs2070901 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Variant rs2988277 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene MLN. Variant rs16858573 associates Disease allergic rhinitis. Variant rs9986945 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs981625 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Variant rs59183580 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Variant rs112401631 associates Disease allergic rhinitis. Variant rs597808 associates Disease allergic rhinitis. Variant rs12952581 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Variant rs60946162 associates Disease allergic rhinitis. Variant rs2070902 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs34004019 associates Disease allergic rhinitis. Variant rs3793079 associates Disease allergic rhinitis. Variant rs4381563 associates Disease allergic rhinitis. Variant rs6738825 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQA1. Variant rs11539209 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Variant rs6479828 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNC. Variant rs13405815 associates Disease allergic rhinitis. Variant rs4916533 associates Disease allergic rhinitis. Variant rs34290285 associates Disease allergic rhinitis. Variant rs45599938 associates Disease allergic rhinitis. Variant rs28361986 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Variant rs79180837 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFAIP8. Variant rs4616071 associates Disease allergic rhinitis. Variant rs28690449 associates Disease allergic rhinitis. Variant rs12939457 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Variant rs4648883 associates Disease allergic rhinitis. Variant rs61907713 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Variant rs144829310 associates Disease allergic rhinitis. Variant rs113048054 associates Disease allergic rhinitis. Variant rs113377887 associates Disease allergic rhinitis. Variant rs1214598 associates Disease allergic rhinitis. Variant rs12509403 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Variant rs11169225 associates Disease allergic rhinitis. Variant rs62623446 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs72823641 associates Disease allergic rhinitis. Variant rs3918226 associates Disease allergic rhinitis. Variant rs55646091 associates Disease allergic rhinitis. Variant rs12122629 associates Disease allergic rhinitis. Variant rs34463936 associates Disease allergic rhinitis. Disease Takayasu's arteritis associates Gene HLA-B. Variant rs4817988 associates Disease Takayasu's arteritis. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Variant rs62392216 associates Disease Takayasu's arteritis. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant rs2322599 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DQB2. Disease Takayasu's arteritis associates Gene PRRT4. Variant rs12524487 associates Disease Takayasu's arteritis. Variant rs12524487\\xa0 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs61444472 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene ABHD16A. Variant rs9266745 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Variant rs17133698 associates Disease Takayasu's arteritis. Variant HLAB*1501 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DOB. Variant rs2836883 associates Disease Takayasu's arteritis. Variant rs12526858 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs1713450 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Variant rs2844678 associates Disease Takayasu's arteritis. Variant rs2069837 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PTK2B. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene RNF5. Variant chr6:31570670 associates Disease Takayasu's arteritis. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and Takayasu's arteritis. Given list is: MORC4, STN1, ABO, HLA-B, PNPLA3\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048255.2100563}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/391012a0a218639a4266526358da0ca4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/391012a0a218639a4266526358da0ca4/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/391012a0a218639a4266526358da0ca4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39350461a5b491334b2632757a5a46bb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39350461a5b491334b2632757a5a46bb/metadata.json new file mode 100644 index 0000000..1749a3f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39350461a5b491334b2632757a5a46bb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6003727912902832, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and membranous glomerulonephritis. Given list is: HLA-DQA1, WNT4, TNIP1, CAPN14, DTNB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048137.973593}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39350461a5b491334b2632757a5a46bb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39350461a5b491334b2632757a5a46bb/output.pkl Binary files differnew file mode 100644 index 0000000..bab269f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39350461a5b491334b2632757a5a46bb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/394933133edff84a118ed3f51085e2eb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/394933133edff84a118ed3f51085e2eb/metadata.json new file mode 100644 index 0000000..6c8bbeb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/394933133edff84a118ed3f51085e2eb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5517103672027588, "input_args": {"instruction": "'Context: Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene TERT. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SLC6A14. Variant rs116906005 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SCARB2. Disease interstitial lung disease associates Gene HLA-B. Disease interstitial lung disease associates Gene MUC5B. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NKX2-1. Disease interstitial lung disease associates Gene DNAH11. Variant rs6631122 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TP53. Disease interstitial lung disease associates Gene SFTPA1. Variant rs2076295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CCDC65. Disease interstitial lung disease associates Gene HMOX1. Disease interstitial lung disease associates Gene CTC1. Variant rs12702634 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAH1. Disease interstitial lung disease associates Gene SLC34A2. Disease interstitial lung disease associates Gene SLC34A1. Disease interstitial lung disease associates Gene COL3A1. Variant rs73199442 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene MUC2. Variant rs2736100 associates Disease interstitial lung disease. Variant rs6886640 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAH9. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TGFB1. Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs1057519984 associates Disease lung adenocarcinoma. Variant rs1057519985 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs1057519981 associates Disease lung adenocarcinoma. Variant rs1057519982 associates Disease lung adenocarcinoma. Variant rs1057519986 associates Disease lung adenocarcinoma. Variant rs1057520001 associates Disease lung adenocarcinoma. Variant rs1057519989 associates Disease lung adenocarcinoma. Variant rs1057520004 associates Disease lung adenocarcinoma. Variant rs1057520003 associates Disease lung adenocarcinoma. Variant rs1057520005 associates Disease lung adenocarcinoma. Variant rs1057519988 associates Disease lung adenocarcinoma. Variant rs1057520006 associates Disease lung adenocarcinoma. Variant rs1057519987 associates Disease lung adenocarcinoma. Variant rs1057520012 associates Disease lung adenocarcinoma. Variant rs1057520002 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs1057519932 associates Disease lung adenocarcinoma. Variant rs1057519881 associates Disease lung adenocarcinoma. Variant rs1057520008 associates Disease lung adenocarcinoma. Variant rs1057519934 associates Disease lung adenocarcinoma. Variant rs1057519781 associates Disease lung adenocarcinoma. Variant rs1057519921 associates Disease lung adenocarcinoma. Variant rs1057520007 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs1057519918 associates Disease lung adenocarcinoma. Variant rs1057520017 associates Disease lung adenocarcinoma. Variant rs1057519731 associates Disease lung adenocarcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Disease lung carcinoma associates Gene ADAMTS7. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Disease lung carcinoma associates Gene DNAH11. Variant rs4619206 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Gene MIR31 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Gene MIR570 associates Disease lung carcinoma. Gene MIR383 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs570295933 associates Disease lung cancer. Variant rs1057519784 associates Disease lung cancer. Variant rs143884981 associates Disease lung cancer. Variant rs1057519783 associates Disease lung cancer. Gene MIR526B associates Disease lung cancer. Variant rs41293465 associates Disease lung cancer. Gene MIR31 associates Disease lung cancer. Variant rs17337514 associates Disease lung cancer. Disease lung cancer associates Gene TP53. Gene MIR411 associates Disease lung cancer. Gene MIR376A1 associates Disease lung cancer. Gene MIR7-3 associates Disease lung cancer. Gene MIR328 associates Disease lung cancer. Gene MIR376A2 associates Disease lung cancer. Gene MIR1226 associates Disease lung cancer. Gene MIR412 associates Disease lung cancer. Disease lung cancer associates Gene CYP2A6. Gene MIR124-3 associates Disease lung cancer. Gene MIR574 associates Disease lung cancer. Variant rs878855122 associates Disease lung cancer. Variant rs12456284 associates Disease lung cancer. Disease lung cancer associates Gene EGFR. Variant rs760101437 associates Disease lung cancer. Disease lung cancer associates Gene ERCC6. Variant rs1788061731 associates Disease lung cancer. Gene HTR7 expressedin Disease lung cancer. Gene ABCA13 expressedin Disease lung cancer. Gene MIR381 associates Disease lung cancer. Gene MIR1228 associates Disease lung cancer. Gene MIR487B associates Disease lung cancer. Disease lung disease associates Gene CHST14. Disease lung disease associates Gene ATP6V1B2. Disease lung disease associates Gene KRT5. Disease lung disease associates Gene ATP6V1A. Disease lung disease associates Gene MYH6. Disease lung disease associates Gene NKX2-5. Disease lung disease associates Gene NKX2-6. Disease lung disease associates Gene COL6A1. Disease lung disease associates Gene ATP6V1E1. Disease lung disease associates Gene COL6A2. Disease lung disease associates Gene COL6A3. Disease lung disease associates Gene SLC6A14. Disease lung disease associates Gene MYH11. Disease lung disease associates Gene TRPC6. Disease lung disease associates Gene ATP6V0A1. Disease lung disease associates Gene IDH1. Disease lung disease associates Gene ABL1. Disease lung disease associates Gene ITGA7. Disease lung disease associates Gene ECM1. Disease lung disease associates Gene MYH7. Disease lung disease associates Gene ITGA8. Disease lung disease associates Gene TNRC6B. Disease lung disease associates Gene HLA-B. Disease lung disease associates Gene TP53. Disease lung disease associates Gene ATP6V0A2. Disease lung disease associates Gene COL14A1. Disease lung disease associates Gene ITGA3. Disease lung disease associates Gene SASH3. Disease lung disease associates Gene DSE. Disease lung disease associates Gene HS2ST1. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and lung adenocarcinoma. Given list is: CHST11, SYT14, TERT, BARD1, USHBP1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988595.7114022}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/394933133edff84a118ed3f51085e2eb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/394933133edff84a118ed3f51085e2eb/output.pkl Binary files differnew file mode 100644 index 0000000..4451ef9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/394933133edff84a118ed3f51085e2eb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/397258b47ed899dd3cb29b27a0407cc4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/397258b47ed899dd3cb29b27a0407cc4/metadata.json new file mode 100644 index 0000000..c84b69d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/397258b47ed899dd3cb29b27a0407cc4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6234161853790283, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with herpes zoster and psoriasis. Given list is: HLA-DQB1, HOXD3, FAM227B, DNMT3A, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990009.9820774}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/397258b47ed899dd3cb29b27a0407cc4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/397258b47ed899dd3cb29b27a0407cc4/output.pkl Binary files differnew file mode 100644 index 0000000..8037b5b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/397258b47ed899dd3cb29b27a0407cc4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39aca4ede04e27527ccbd6189e8b17e0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39aca4ede04e27527ccbd6189e8b17e0/metadata.json new file mode 100644 index 0000000..f60d2bd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39aca4ede04e27527ccbd6189e8b17e0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5489509105682373, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with nephrotic syndrome and oral cavity cancer. Given list is: CRTC1, PLG, AHR, SLC14A2, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990131.4182096}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39aca4ede04e27527ccbd6189e8b17e0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39aca4ede04e27527ccbd6189e8b17e0/output.pkl Binary files differnew file mode 100644 index 0000000..b784df4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39aca4ede04e27527ccbd6189e8b17e0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39cf72cb3df436e95e3f1ea5051afc36/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39cf72cb3df436e95e3f1ea5051afc36/metadata.json new file mode 100644 index 0000000..8e9f434 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39cf72cb3df436e95e3f1ea5051afc36/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4564356803894043, "input_args": {"instruction": "'Context: Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene CDKN1A. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene ARID1B. Disease ontology identifier of duodenal ulcer is DOID:1724. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer presents Symptom Asthenia. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer presents Symptom Diarrhea. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer associates Gene JRK. Variant rs116423146 associates Disease malaria. Variant rs8176722 associates Disease malaria. Variant rs8176719 associates Disease malaria. Variant rs567544458 associates Disease malaria. Disease malaria associates Gene HBG2. Disease malaria associates Gene MMP26. Variant rs4951377 associates Disease malaria. Disease malaria associates Gene ABO. Disease malaria associates Gene OR51B5. Variant rs186873296 associates Disease malaria. Disease malaria associates Gene MVB12B. Variant rs57032711 associates Disease malaria. Disease malaria associates Gene OR51F1. Variant rs12788102 associates Disease malaria. Disease malaria associates Gene HBB. Variant rs372091 associates Disease malaria. Variant rs10900585 associates Disease malaria. Variant rs11036238 associates Disease malaria. Disease malaria associates Gene HBE1. Disease malaria associates Gene ATP2B4. Variant rs334 associates Disease malaria. Disease ontology identifier of malaria is DOID:12365. Disease malaria associates Gene FREM3. Compound Duomectin treats Disease malaria. Disease malaria presents Symptom Diarrhea. Disease malaria presents Symptom Fever of Unknown Origin. Disease malaria localizes Anatomy digestive system. Disease malaria presents Symptom Hypergammaglobulinemia. Disease Plasmodium falciparum malaria isa Disease malaria. Disease dengue disease resembles Disease malaria. \\nQuestion: Out of the given list, which Gene is associated with duodenal ulcer and malaria. Given list is: IGF1R, HLA-DQA1, USHBP1, ABO, GTF2I'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047767.8927643}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39cf72cb3df436e95e3f1ea5051afc36/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39cf72cb3df436e95e3f1ea5051afc36/output.pkl Binary files differnew file mode 100644 index 0000000..d1c04d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/39cf72cb3df436e95e3f1ea5051afc36/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3a104a513a7f8023180c0eb7680e5701/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3a104a513a7f8023180c0eb7680e5701/metadata.json new file mode 100644 index 0000000..47e5ca2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3a104a513a7f8023180c0eb7680e5701/metadata.json @@ -0,0 +1 @@ +{"duration": 0.42567873001098633, "input_args": {"instruction": "'Context: Disease interstitial lung disease associates Gene ZNFX1. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene IL2RA. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene SFTPA1. Disease interstitial lung disease associates Gene SFTPB. Disease interstitial lung disease associates Gene SFTPA2. Variant rs2076295 associates Disease interstitial lung disease. Variant rs116906005 associates Disease interstitial lung disease. Variant rs73199442 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TERT. Disease interstitial lung disease associates Gene SFTPC. Gene MIR128-2 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TP53. Variant rs35705950 associates Disease interstitial lung disease. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene IL2RB. Disease interstitial lung disease associates Gene PTPN22. Gene MIR128-1 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene OFD1. Variant rs4727443 associates Disease interstitial lung disease. Variant rs2034650 associates Disease interstitial lung disease. Variant rs11191865 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NKX2-1. Variant rs2736100 associates Disease interstitial lung disease. Variant rs12702634 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-B. Variant rs6477542 associates Disease interstitial lung disease. Variant rs6631122 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene STAT5B. Disease myeloproliferative neoplasm associates Gene THPO.. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TERT. Variant rs121913520 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene ATM. Variant rs121913504 associates Disease myeloproliferative neoplasm. Gene MIR433 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TET2. Gene MIR15B associates Disease myeloproliferative neoplasm. Variant rs1555760738 associates Disease myelofibrosis. Gene MIR34A associates Disease myelofibrosis. Variant rs587776885 associates Disease myelofibrosis. Variant rs121913614 associates Disease myelofibrosis. Variant rs77375493 associates Disease myelofibrosis. Disease myelofibrosis associates Gene TET2. Variant rs121913615 associates Disease myelofibrosis. Disease myelofibrosis associates Gene IDH1. Variant rs755257605 associates Disease myelofibrosis. Disease myelofibrosis associates Gene JAK2. Variant rs879255268 associates Disease myelofibrosis. Variant rs121913616 associates Disease myelofibrosis. Disease myelofibrosis associates Gene IDH2. Variant rs146249964 associates Disease myelofibrosis. Disease myelofibrosis associates Gene SH2B3. Variant rs72650673 associates Disease myelofibrosis. Disease myelofibrosis associates Gene MPL. Disease myelofibrosis resembles Disease splenic tuberculosis. Disease ontology identifier of myelofibrosis is DOID:4971. Disease myelofibrosis associates Gene CALR. Disease myelofibrosis presents Symptom Abnormality of the skin. Disease myelofibrosis presents Symptom Abnormality of the skin. Disease atypical chronic myeloid leukemia, BCR-ABL1 negative resembles Disease myelofibrosis. Disease myelofibrosis presents Symptom Abnormality of the lymphatic system. Disease myeloid neoplasm associates Gene IRF4. Disease myeloid neoplasm associates Gene JAK2.. Disease myeloid neoplasm associates Gene FIP1L1. Variant chr9:5073770 associates Disease myeloid neoplasm. Variant chr20:32434638 associates Disease myeloid neoplasm. Disease myeloid neoplasm associates Gene ORAI1. Variant chr17:76736877 associates Disease myeloid neoplasm. Disease ontology identifier of myeloid sarcoma is DOID:8683. Disease myelofibrosis resembles Disease myeloid sarcoma. Disease myeloid sarcoma localizes Anatomy thoracic vertebra. Disease myeloid sarcoma localizes Anatomy skin of body. Disease essential thrombocythemia resembles Disease myeloid sarcoma. Disease myeloid sarcoma presents Symptom Paraparesis. Disease myeloid sarcoma presents Symptom Paraplegia. Disease myeloid sarcoma localizes Anatomy pericardium. Disease myeloid sarcoma presents Symptom Back Pain. Disease myeloid sarcoma localizes Anatomy zone of skin. Disease myeloid sarcoma localizes Anatomy vertebral column. Disease myeloid sarcoma localizes Anatomy bone marrow. Disease myeloid sarcoma presents Symptom Low Back Pain. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and myeloproliferative neoplasm. Given list is: ZFPM2, IL23R, TERT, THADA, IL23R'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988546.4574552}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3a104a513a7f8023180c0eb7680e5701/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3a104a513a7f8023180c0eb7680e5701/output.pkl Binary files differnew file mode 100644 index 0000000..4451ef9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3a104a513a7f8023180c0eb7680e5701/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3c598f6c18b7a819b195d9dbd26dc155/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3c598f6c18b7a819b195d9dbd26dc155/metadata.json new file mode 100644 index 0000000..fac09e5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3c598f6c18b7a819b195d9dbd26dc155/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48094606399536133, "input_args": {"instruction": "'Context: Variant rs62146540 associates Disease androgenic alopecia. Variant rs4679956 associates Disease androgenic alopecia. Variant rs182973285 associates Disease androgenic alopecia. Variant rs191648835 associates Disease androgenic alopecia. Variant rs9282858 associates Disease androgenic alopecia. Variant rs12203592 associates Disease androgenic alopecia. Variant rs35892873 associates Disease androgenic alopecia. Variant rs200644307 associates Disease androgenic alopecia. Variant rs62385385 associates Disease androgenic alopecia. Variant rs115182912 associates Disease androgenic alopecia. Variant rs8085664 associates Disease androgenic alopecia. Variant rs11694173 associates Disease androgenic alopecia. Variant rs5933688 associates Disease androgenic alopecia. Variant chr17:43947866 associates Disease androgenic alopecia. Variant rs1160312 associates Disease androgenic alopecia. Variant rs12902958 associates Disease androgenic alopecia. Variant rs9287638 associates Disease androgenic alopecia. Variant rs9398803 associates Disease androgenic alopecia.. Variant rs180807105 associates Disease androgenic alopecia. Variant rs9719620 associates Disease androgenic alopecia. Variant rs10888690 associates Disease androgenic alopecia. Disease androgenic alopecia associates Gene TBX15. Variant rs2180439 associates Disease androgenic alopecia. Variant rs10930758 associates Disease androgenic alopecia. Variant rs6047844 associates Disease androgenic alopecia. Variant rs919462 associates Disease androgenic alopecia. Variant rs6945541 associates Disease androgenic alopecia. Variant rs3781458 associates Disease androgenic alopecia. Variant rs11593840 associates Disease androgenic alopecia. Variant rs10502861 associates Disease androgenic alopecia. Variant rs9357047 associates Disease androgenic alopecia. Variant rs6752754 associates Disease androgenic alopecia. Variant rs111763724 associates Disease androgenic alopecia. Variant rs185597083 associates Disease androgenic alopecia. Variant rs11684254 associates Disease androgenic alopecia. Variant rs3781452 associates Disease androgenic alopecia. Variant rs10484561 associates Disease mature B-cell neoplasm. Variant rs12195582 associates Disease mature B-cell neoplasm. Variant rs4938573 associates Disease mature B-cell neoplasm. Variant rs735665 associates Disease mature B-cell neoplasm. \\nQuestion: Out of the given list, which Gene is associated with androgenic alopecia and mature B-cell neoplasm. Given list is: TM6SF2, HLA-B, SLC14A2, PHGDH, TTLL5'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990187.240692}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3c598f6c18b7a819b195d9dbd26dc155/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3c598f6c18b7a819b195d9dbd26dc155/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3c598f6c18b7a819b195d9dbd26dc155/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cb9b7e3d11f755958a4fc2eb28887ad/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cb9b7e3d11f755958a4fc2eb28887ad/metadata.json new file mode 100644 index 0000000..ed0376f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cb9b7e3d11f755958a4fc2eb28887ad/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5431623458862305, "input_args": {"instruction": "'Context: Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Variant rs387906631 associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs371769427 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs12203592 associates Disease myelodysplastic syndrome. Variant rs121913237 associates Disease myelodysplastic syndrome. Variant rs121913500 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Variant rs121434595 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs104894229 associates Disease myelodysplastic syndrome.. Variant rs121434596 associates Disease myelodysplastic syndrome. Variant rs769053835 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Variant rs11540652 associates Disease myelodysplastic syndrome. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs752746786 associates Disease myelodysplastic syndrome. Variant rs147001633 associates Disease myelodysplastic syndrome. Variant rs377023736 associates Disease myelodysplastic syndrome. Variant rs1576745225 associates Disease myelodysplastic syndrome. Variant rs193303018 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCD2. Disease myelodysplastic syndrome associates Gene TERT. Disease myelodysplastic syndrome associates Gene FANCC. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCL. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene FANCI. Disease myelodysplastic syndrome associates Gene GATA1. Variant rs769081887 associates Disease myelodysplastic syndrome. Gene MIR378A associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene BRCA1. Disease myelodysplastic syndrome associates Gene GATA2. Disease myelodysplastic syndrome associates Gene FANCG. Disease myelodysplastic syndrome associates Gene FANCM. Disease myelodysplastic syndrome associates Gene FANCE. Disease myelodysplastic syndrome associates Gene XRCC2. Disease myelodysplastic syndrome associates Gene RPL35A. Disease myelodysplastic syndrome associates Gene SF3B1. Disease myelodysplastic syndrome associates Gene PALB2. Disease myelodysplastic syndrome associates Gene DNAJC21. Disease myelodysplastic syndrome associates Gene SBDS. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Disease myelodysplastic syndrome associates Gene ERCC4. Variant rs267606870 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51C. Disease myelodysplastic syndrome associates Gene RPL35. Variant rs78898975 associates Disease myelodysplastic syndrome. Gene MIR16-2 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene DKC1. Disease myelodysplastic syndrome associates Gene PTPN11. Disease myelodysplastic syndrome associates Gene BRAF. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and myelodysplastic syndrome. Given list is: IL23R, TERT, HLA-B, HLA-DQA1, TNXB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048303.0794795}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cb9b7e3d11f755958a4fc2eb28887ad/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cb9b7e3d11f755958a4fc2eb28887ad/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cb9b7e3d11f755958a4fc2eb28887ad/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cd2434dc039e8d318ee9bac53a89cdb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cd2434dc039e8d318ee9bac53a89cdb/metadata.json new file mode 100644 index 0000000..b33a3dc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cd2434dc039e8d318ee9bac53a89cdb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7218532562255859, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with hypertrophic cardiomyopathy and dilated cardiomyopathy. Given list is: ZFPM2, HLA-B, BRCA2, MST1, MYH7'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989468.808539}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cd2434dc039e8d318ee9bac53a89cdb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cd2434dc039e8d318ee9bac53a89cdb/output.pkl Binary files differnew file mode 100644 index 0000000..4461f25 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3cd2434dc039e8d318ee9bac53a89cdb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3d39101d83f40bebbf55ead5a94d82b9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3d39101d83f40bebbf55ead5a94d82b9/metadata.json new file mode 100644 index 0000000..fe6b33b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3d39101d83f40bebbf55ead5a94d82b9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6408615112304688, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and myeloproliferative neoplasm. Given list is: TERT, HLA-DQB2, BRCA2, GNE, STAT3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048063.7601476}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3d39101d83f40bebbf55ead5a94d82b9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3d39101d83f40bebbf55ead5a94d82b9/output.pkl Binary files differnew file mode 100644 index 0000000..20fd155 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3d39101d83f40bebbf55ead5a94d82b9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3db9082b0ea923f71f3cfef7ba4afe34/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3db9082b0ea923f71f3cfef7ba4afe34/metadata.json new file mode 100644 index 0000000..467c777 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3db9082b0ea923f71f3cfef7ba4afe34/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6404204368591309, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myelodysplastic syndrome and psoriasis. Given list is: VAV3, TERT, CLPTM1L, PTPN22, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989825.0572524}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3db9082b0ea923f71f3cfef7ba4afe34/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3db9082b0ea923f71f3cfef7ba4afe34/output.pkl Binary files differnew file mode 100644 index 0000000..c973dc3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3db9082b0ea923f71f3cfef7ba4afe34/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3dc1bfa98e8402cb7e6dfadb753fbab7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3dc1bfa98e8402cb7e6dfadb753fbab7/metadata.json new file mode 100644 index 0000000..432e5fe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3dc1bfa98e8402cb7e6dfadb753fbab7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.43108296394348145, "input_args": {"instruction": "\"Context: Disease arthrogryposis multiplex congenita-4 associates Gene SCYL2.. Disease arthrogryposis multiplex congenita-1 associates Gene LGI4.. Disease arthrogryposis multiplex congenita-3 associates Gene SYNE1.. Variant rs2030965698 associates Disease arthrogryposis multiplex congenita-5. Variant rs774552108 associates Disease arthrogryposis multiplex congenita-5. Disease arthrogryposis multiplex congenita-5 associates Gene TOR1A. Variant rs760768475 associates Disease arthrogryposis multiplex congenita-5.. Disease arthrogryposis multiplex congenita-5 isa Disease autosomal recessive disease. Disease arthrogryposis multiplex congenita-5 presents Symptom Abnormality of blood and blood-forming tissues. Disease ontology identifier of arthrogryposis multiplex congenita-5 is DOID:0080981. Disease arthrogryposis multiplex congenita-5 presents Symptom Abnormal joint morphology. Disease arthrogryposis multiplex congenita-5 presents Symptom Abnormality of the eye. Disease arthrogryposis multiplex congenita-5 presents Symptom Abnormality of the eye. Disease arthrogryposis multiplex congenita-5 presents Symptom Strabismus. Disease arthrogryposis multiplex congenita-5 presents Symptom Ptosis. Disease arthrogryposis multiplex congenita-5 isa Disease arthrogryposis multiplex congenita. Disease arthrogryposis multiplex congenita-5 presents Symptom Morphological central nervous system abnormality. Disease complement component 4b deficiency associates Gene C4B. Variant rs756439916 associates Disease complement component 4b deficiency.. Variant rs771378213 associates Disease complement component 4b deficiency. Disease complement component 4b deficiency presents Symptom Sinusitis. Disease complement component 4b deficiency presents Symptom Sinusitis. \\nQuestion: Out of the given list, which Gene is associated with inflammatory bowel disease and Crohn's disease. Given list is: TNRC6B, ARMS2, RORA, MORC4, IL23R\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988535.3807929}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3dc1bfa98e8402cb7e6dfadb753fbab7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3dc1bfa98e8402cb7e6dfadb753fbab7/output.pkl Binary files differnew file mode 100644 index 0000000..64274d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3dc1bfa98e8402cb7e6dfadb753fbab7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e273e234603658ff63facff5cecd775/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e273e234603658ff63facff5cecd775/metadata.json new file mode 100644 index 0000000..8d84f16 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e273e234603658ff63facff5cecd775/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4158191680908203, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriasis and allergic rhinitis. Given list is: ATP2B1, HLA-B, STAT4, TERT, FADS1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988419.6490083}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e273e234603658ff63facff5cecd775/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e273e234603658ff63facff5cecd775/output.pkl Binary files differnew file mode 100644 index 0000000..761df25 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e273e234603658ff63facff5cecd775/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e562bd9ea0a0605baad493153a4fa26/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e562bd9ea0a0605baad493153a4fa26/metadata.json new file mode 100644 index 0000000..c19f9f7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e562bd9ea0a0605baad493153a4fa26/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6354005336761475, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with non-alcoholic steatohepatitis and liver cirrhosis. Given list is: PNPLA3, SULT1B1, KIT, AHR, FAM227B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990063.927436}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e562bd9ea0a0605baad493153a4fa26/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e562bd9ea0a0605baad493153a4fa26/output.pkl Binary files differnew file mode 100644 index 0000000..f3af65c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3e562bd9ea0a0605baad493153a4fa26/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ebf737f3eba4a859f2403ce81a432f0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ebf737f3eba4a859f2403ce81a432f0/metadata.json new file mode 100644 index 0000000..06ab60b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ebf737f3eba4a859f2403ce81a432f0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5138523578643799, "input_args": {"instruction": "'Context: Variant rs11661542 associates Disease intracranial aneurysm. Variant rs11646044 associates Disease intracranial aneurysm. Variant rs564680092 associates Disease intracranial aneurysm. Variant rs595244 associates Disease intracranial aneurysm. Variant rs6475606 associates Disease intracranial aneurysm. Variant rs55965782 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene ANGPTL6. Variant rs855917 associates Disease intracranial aneurysm. Variant rs5981626 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene ATP2B1. Variant rs62516550 associates Disease intracranial aneurysm. Variant rs11153071 associates Disease intracranial aneurysm. Variant rs12226402 associates Disease intracranial aneurysm. Variant rs6997005 associates Disease intracranial aneurysm. Variant rs148502998 associates Disease intracranial aneurysm. Variant rs39713 associates Disease intracranial aneurysm. Variant rs6841581 associates Disease intracranial aneurysm. Variant rs8034191 associates Disease intracranial aneurysm. Variant rs11044991 associates Disease intracranial aneurysm. Variant rs1554600 associates Disease intracranial aneurysm. Variant rs6842241 associates Disease intracranial aneurysm. Gene MIR455 associates Disease intracranial aneurysm. Variant rs919433 associates Disease intracranial aneurysm. Gene MIR24-1 associates Disease intracranial aneurysm. Variant rs12413409 associates Disease intracranial aneurysm. Variant rs2280543 associates Disease intracranial aneurysm. Variant rs58721068 associates Disease intracranial aneurysm. Variant rs12225799 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene COL1A1. Variant rs4814863 associates Disease intracranial aneurysm. Variant rs4977574 associates Disease intracranial aneurysm. Variant rs11105352 associates Disease intracranial aneurysm. Gene MIR145 associates Disease intracranial aneurysm. Variant rs1333040 associates Disease intracranial aneurysm. Variant rs11105337 associates Disease intracranial aneurysm. Variant rs9298506 associates Disease intracranial aneurysm. Gene MIR29B2 associates Disease intracranial aneurysm. Variant rs10958409 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene FBN1. Variant rs4705938 associates Disease intracranial aneurysm. Variant rs8087799 associates Disease intracranial aneurysm. Variant rs11187838 associates Disease intracranial aneurysm. Variant rs10733376 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene FGD6. Disease intracranial aneurysm associates Gene RP1. Gene MIR146A associates Disease intracranial aneurysm. Variant rs2681472 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene STAT1. Disease intracranial aneurysm associates Gene PDE11A. Disease intracranial aneurysm associates Gene FHL5. Variant rs1537373 associates Disease intracranial aneurysm. Variant rs3742321 associates Disease intracranial aneurysm. Gene MIR133B associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene PRKAR1A. Disease intracranial aneurysm associates Gene FARSB. Gene MIR143 associates Disease intracranial aneurysm. Variant rs3132468 associates Disease dengue hemorrhagic fever.. Variant rs3765524 associates Disease dengue hemorrhagic fever. Disease dengue hemorrhagic fever associates Gene PLCE1. Disease dengue hemorrhagic fever associates Gene MICB. Disease ontology identifier of dengue hemorrhagic fever is DOID:12206. Disease dengue hemorrhagic fever localizes Anatomy blood plasma. Disease dengue hemorrhagic fever presents Symptom Fever of Unknown Origin. Organism Dengue virus causes Disease dengue hemorrhagic fever. Disease dengue hemorrhagic fever presents Symptom Fever. \\nQuestion: Out of the given list, which Gene is associated with intracranial aneurysm and dengue hemorrhagic fever. Given list is: RP1, IGF1R, BABAM1, DLEU7, ATG5'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990179.3078415}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ebf737f3eba4a859f2403ce81a432f0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ebf737f3eba4a859f2403ce81a432f0/output.pkl Binary files differnew file mode 100644 index 0000000..939fff2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ebf737f3eba4a859f2403ce81a432f0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ecb63e372661b7b86f9396579d41980/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ecb63e372661b7b86f9396579d41980/metadata.json new file mode 100644 index 0000000..4cd62fb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ecb63e372661b7b86f9396579d41980/metadata.json @@ -0,0 +1 @@ +{"duration": 0.40717220306396484, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriasis and herpes zoster. Given list is: MIF, HLA-B, PLA2G6, SCN1A, KITLG'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988417.8496563}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ecb63e372661b7b86f9396579d41980/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ecb63e372661b7b86f9396579d41980/output.pkl Binary files differnew file mode 100644 index 0000000..b739d49 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3ecb63e372661b7b86f9396579d41980/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3f9c9fe90e2be1d61a6e0febe498a0d2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3f9c9fe90e2be1d61a6e0febe498a0d2/metadata.json new file mode 100644 index 0000000..2c80930 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3f9c9fe90e2be1d61a6e0febe498a0d2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5793368816375732, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and age-related hearing impairment. Given list is: rs1950829, rs13263709, rs1126809, rs34871267, rs2431108'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049055.593531}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3f9c9fe90e2be1d61a6e0febe498a0d2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3f9c9fe90e2be1d61a6e0febe498a0d2/output.pkl Binary files differnew file mode 100644 index 0000000..0f2ccf0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3f9c9fe90e2be1d61a6e0febe498a0d2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3fb56acc74c4a818545879826153806c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3fb56acc74c4a818545879826153806c/metadata.json new file mode 100644 index 0000000..37144b4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3fb56acc74c4a818545879826153806c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4915452003479004, "input_args": {"instruction": "'Context: Variant rs10771399 associates Disease triple-receptor negative breast cancer. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene TP53. Disease interstitial lung disease associates Gene AP3B1. Variant rs2076295 associates Disease interstitial lung disease. Variant rs6631122 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene PRTN3. Disease interstitial lung disease associates Gene RTEL1. Variant rs2736100 associates Disease interstitial lung disease. Variant rs116906005 associates Disease interstitial lung disease. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TERT. Variant rs6793295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAAF4. Disease interstitial lung disease associates Gene DNAAF3. Disease interstitial lung disease associates Gene DNAAF5. Disease interstitial lung disease associates Gene DNAAF6. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAAF2. Variant rs6477542 associates Disease interstitial lung disease. Variant rs12702634 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene FARSB. Variant rs6886640 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CSF2RB. Variant rs2034650 associates Disease interstitial lung disease. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAAF11. Disease interstitial lung disease associates Gene PARN. Disease interstitial lung disease associates Gene CSF2RA. Disease interstitial lung disease associates Gene TGFB1. Variant rs1278769 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA1. Variant rs11191865 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAJB13. Disease interstitial lung disease associates Gene DNAAF1. Disease interstitial lung disease associates Gene ERF. Variant rs1981997 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene DNAI1. Disease interstitial lung disease associates Gene NKX2-1. Variant rs4727443 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene FARSA. Disease interstitial lung disease associates Gene RPGR. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene GSTM3. Variant rs2957316 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA2. Disease interstitial lung disease associates Gene CFTR. Variant rs912535 associates Disease interstitial lung disease. Variant rs73199442 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene COL3A1. Variant rs12610495 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ABCA3. Disease interstitial lung disease associates Gene SFTPB. Disease interstitial lung disease associates Gene SFTPC. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene IRF5. Disease interstitial lung disease associates Gene TP53. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene BTNL2. Disease interstitial lung disease associates Gene IL1RN. Disease interstitial lung disease associates Gene STK36. Disease interstitial lung disease associates Gene POLR3H. Disease interstitial lung disease associates Gene DNAI2. Disease interstitial lung disease associates Gene DNAL1. Disease interstitial lung disease associates Gene HLA-B. Disease interstitial lung disease associates Gene FASLG. Disease interstitial lung disease associates Gene SERPINA1. Disease interstitial lung disease associates Gene TOM1. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and interstitial lung disease. Given list is: ADGRG6, FGFR2, AFAP1, TERT, YLPM1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989507.954819}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3fb56acc74c4a818545879826153806c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3fb56acc74c4a818545879826153806c/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/3fb56acc74c4a818545879826153806c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/40dbd8096d3010f6611cf529bb411a5f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/40dbd8096d3010f6611cf529bb411a5f/metadata.json new file mode 100644 index 0000000..d284b7f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/40dbd8096d3010f6611cf529bb411a5f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5636632442474365, "input_args": {"instruction": "'Context: Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene ARID1B. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene ABO. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer presents Symptom Dyspepsia. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer presents Symptom Abdominal Pain. Disease duodenal ulcer presents Symptom Pain. Disease duodenal ulcer localizes Anatomy common bile duct. Disease duodenal ulcer associates Gene JRK. Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene MUC1. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene PLCE1. Disease gastric fundus cancer associates Gene THBS3. Disease gastric fundus cancer associates Gene CUX2. \\nQuestion: Out of the given list, which Gene is associated with duodenal ulcer and gastric fundus cancer. Given list is: CACNA1S, MUC5B, FBN1, PSCA, BTC'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990061.9649303}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/40dbd8096d3010f6611cf529bb411a5f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/40dbd8096d3010f6611cf529bb411a5f/output.pkl Binary files differnew file mode 100644 index 0000000..33ad383 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/40dbd8096d3010f6611cf529bb411a5f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4151cd0cf4922b7279f5e22035a41693/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4151cd0cf4922b7279f5e22035a41693/metadata.json new file mode 100644 index 0000000..cda9516 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4151cd0cf4922b7279f5e22035a41693/metadata.json @@ -0,0 +1 @@ +{"duration": 23.678524017333984, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and idiopathic pulmonary fibrosis. Given list is: TERT, MORC4, DMRT1, GRAMD1B, GTF2I'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047998.162909}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4151cd0cf4922b7279f5e22035a41693/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4151cd0cf4922b7279f5e22035a41693/output.pkl Binary files differnew file mode 100644 index 0000000..16f320a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4151cd0cf4922b7279f5e22035a41693/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41adc57fef90ef31f1bc3c9c42d06b19/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41adc57fef90ef31f1bc3c9c42d06b19/metadata.json new file mode 100644 index 0000000..4de1b55 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41adc57fef90ef31f1bc3c9c42d06b19/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5190625190734863, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and triple-receptor negative breast cancer. Given list is: TRAF3IP2, HBB, TERT, HOXD3, ATP2B1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048671.1896393}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41adc57fef90ef31f1bc3c9c42d06b19/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41adc57fef90ef31f1bc3c9c42d06b19/output.pkl Binary files differnew file mode 100644 index 0000000..a4eb6e1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41adc57fef90ef31f1bc3c9c42d06b19/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41ce4db955ea79647f4c1c0121bf7113/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41ce4db955ea79647f4c1c0121bf7113/metadata.json new file mode 100644 index 0000000..26408b0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41ce4db955ea79647f4c1c0121bf7113/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5610964298248291, "input_args": {"instruction": "'Context: Disease immunoglobulin alpha deficiency associates Gene GATA3. Disease immunoglobulin alpha deficiency associates Gene TCN2. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene CSNK2A1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene CD3D. Disease immunoglobulin alpha deficiency associates Gene CTLA4. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease immunoglobulin alpha deficiency associates Gene CD3E. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Disease immunoglobulin alpha deficiency associates Gene DNMT3B. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene TNFRSF11A. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Disease immunoglobulin alpha deficiency associates Gene ITCH. Disease immunoglobulin alpha deficiency associates Gene CD79B. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Disease immunoglobulin alpha deficiency associates Gene PIK3CG. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Variant rs1244181 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene PLCG2. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease collagenous colitis resembles Disease common variable immunodeficiency. \\nQuestion: Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and collagenous colitis. Given list is: GATA3, HLA-DQA1, SNTB1, CHEK2, HLA-DRB5'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989821.6659276}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41ce4db955ea79647f4c1c0121bf7113/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41ce4db955ea79647f4c1c0121bf7113/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/41ce4db955ea79647f4c1c0121bf7113/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42018850b29c6336fd7a7852008fc2a4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42018850b29c6336fd7a7852008fc2a4/metadata.json new file mode 100644 index 0000000..b378ecd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42018850b29c6336fd7a7852008fc2a4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5322084426879883, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with large intestine cancer and prostate carcinoma. Given list is: rs1107345, rs59325236, rs12203592, rs6983267, rs11675342'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048987.573671}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42018850b29c6336fd7a7852008fc2a4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42018850b29c6336fd7a7852008fc2a4/output.pkl Binary files differnew file mode 100644 index 0000000..f5f7c07 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42018850b29c6336fd7a7852008fc2a4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42512a21e4c03ccafa2f3a8066b060d7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42512a21e4c03ccafa2f3a8066b060d7/metadata.json new file mode 100644 index 0000000..75edd4d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42512a21e4c03ccafa2f3a8066b060d7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.858389139175415, "input_args": {"instruction": "'Context: Disease age related macular degeneration associates Gene CFB. Disease age related macular degeneration associates Gene CFH. Disease age related macular degeneration associates Gene RAD51B. Disease age related macular degeneration associates Gene CFHR1. Disease age related macular degeneration associates Gene CFHR5. Disease age related macular degeneration associates Gene CFHR4. Disease age related macular degeneration associates Gene CFHR3. Disease age related macular degeneration associates Gene C2. Disease age related macular degeneration associates Gene HERC2. Disease age related macular degeneration associates Gene CFI. Disease age related macular degeneration associates Gene VEGFA. Disease age related macular degeneration associates Gene RAX2. Disease age related macular degeneration associates Gene CST3. Disease age related macular degeneration associates Gene HMCN1. Disease age related macular degeneration associates Gene ERCC6. Disease age related macular degeneration associates Gene ARMS2. Disease age related macular degeneration associates Gene SLC16A8. Disease age related macular degeneration associates Gene ABCA4. Disease age related macular degeneration associates Gene HTRA1. Disease age related macular degeneration associates Gene COL8A1. Disease age related macular degeneration associates Gene CX3CR1. Disease age related macular degeneration associates Gene ALDH1A2. Disease age related macular degeneration associates Gene C3. Disease age related macular degeneration associates Gene TIMP3. Disease age related macular degeneration associates Gene TGFBR1. Disease age related macular degeneration associates Gene SYN3. Disease age related macular degeneration associates Gene COL10A1. Variant rs62642574 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene NT5DC1. Disease age related macular degeneration associates Gene FRK. Disease age related macular degeneration associates Gene ASPM. Disease age related macular degeneration associates Gene CETP. Disease age related macular degeneration associates Gene TNFRSF10A. Disease kidney disease associates Gene RAD51C. Disease kidney disease associates Gene RAD51. Disease kidney disease associates Gene CFH. Disease kidney disease associates Gene CFB. Disease kidney disease associates Gene MFSD2A. Disease kidney disease associates Gene MAGED2. Disease kidney disease associates Gene CFHR1. Disease kidney disease associates Gene MAFB. Disease kidney disease associates Gene CFHR3. Disease kidney disease associates Gene CFHR5. Disease kidney disease associates Gene CFHR2. Disease kidney disease associates Gene CRB2. Disease kidney disease associates Gene MCFD2. Disease kidney disease associates Gene EYA1. Disease kidney disease associates Gene HAAO. Disease kidney disease associates Gene CHEK2. Disease kidney disease associates Gene ZNF592. Disease kidney disease associates Gene CASK. Disease kidney disease associates Gene COL3A1. Disease kidney disease associates Gene CASR. Disease kidney disease associates Gene BRCA2. Disease kidney disease associates Gene HOGA1. Disease kidney disease associates Gene HLA-B. Disease kidney disease associates Gene C4A. Disease kidney disease associates Gene TIMMDC1. Disease kidney disease associates Gene ZNF423. Disease kidney disease associates Gene FANCD2. Disease kidney disease associates Gene SERPINH1. Disease kidney disease associates Gene BRAF. Disease kidney disease associates Gene FANCC. Disease kidney disease associates Gene MMP1. Disease kidney disease associates Gene FANCB. Disease kidney disease associates Gene CWC27. Disease kidney disease associates Gene FANCA. Disease kidney disease associates Gene DROSHA. Disease kidney disease associates Gene XRCC4. Disease kidney disease associates Gene FANCL. Disease kidney disease associates Gene FH. Disease kidney disease associates Gene FANCI. Disease kidney disease associates Gene HFE. Disease kidney disease associates Gene MSH3. Disease kidney disease associates Gene FANCF. Disease kidney disease associates Gene MMP23B. Disease kidney disease associates Gene TMEM165. Disease kidney disease associates Gene RAD54B. Disease kidney disease associates Gene FANCG. Variant rs9275596 associates Disease kidney disease. Disease kidney disease associates Gene C1QB. Disease kidney disease associates Gene CCDC28B. Disease kidney disease associates Gene CUBN. Disease kidney disease associates Gene SHOC2. Disease kidney disease associates Gene COL4A1. Disease kidney disease associates Gene DACT1. Disease kidney disease associates Gene OFD1. Disease kidney disease associates Gene C3. Disease kidney disease associates Gene FANCM. Disease kidney disease associates Gene COL4A6. Disease kidney disease associates Gene FANCE. Disease kidney disease associates Gene HOXD13. Disease kidney disease associates Gene CYBC1. Disease kidney disease associates Gene APOE. Disease kidney disease associates Gene MCPH1. Disease kidney disease associates Gene XRCC2. Disease kidney disease associates Gene CEP57. Disease kidney disease associates Gene MOCS1. Disease kidney disease associates Gene MEN1. Disease kidney disease associates Gene FAH. Disease kidney disease associates Gene COMT. Disease kidney disease associates Gene FAM149B1. Disease kidney disease associates Gene ALX4. Disease kidney disease associates Gene MOCS2. Disease kidney disease associates Gene FREM2. Disease kidney disease associates Gene CFAP418. Disease kidney disease associates Gene C1QC. Disease kidney disease associates Gene HLA-DRB1. \\nQuestion: Out of the given list, which Gene is associated with age related macular degeneration and kidney disease. Given list is: RAD51B, CFH, C1orf127, CASZ1, HAAO'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047760.1801066}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42512a21e4c03ccafa2f3a8066b060d7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42512a21e4c03ccafa2f3a8066b060d7/output.pkl Binary files differnew file mode 100644 index 0000000..8d7d05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42512a21e4c03ccafa2f3a8066b060d7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42b8a0b4d9b61b464e09679203abd49c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42b8a0b4d9b61b464e09679203abd49c/metadata.json new file mode 100644 index 0000000..d72c85e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42b8a0b4d9b61b464e09679203abd49c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4550337791442871, "input_args": {"instruction": "'Context: Disease developmental and epileptic encephalopathy 91 associates Gene PPP3CA. Disease developmental and epileptic encephalopathy 91 presents Symptom Focal motor seizure. Disease developmental and epileptic encephalopathy 91 presents Symptom Seizures. Disease developmental and epileptic encephalopathy 91 presents Symptom Seizure. Disease developmental and epileptic encephalopathy 91 presents Symptom Abnormality of the nervous system. Disease developmental and epileptic encephalopathy 91 presents Symptom Generalized non-motor (absence) seizure. Disease developmental and epileptic encephalopathy 91 isa Disease autosomal dominant disease. Disease developmental and epileptic encephalopathy 91 presents Symptom Abnormal foot morphology.. Disease focal epilepsy associates Gene SCN2A. Disease focal epilepsy associates Gene SCN1A. Disease focal epilepsy associates Gene SLC13A5. Disease focal epilepsy associates Gene SLC38A3. Disease focal epilepsy associates Gene SCN1B. Variant rs1057519543 associates Disease focal epilepsy. Disease focal epilepsy associates Gene KCNT1. Variant rs1057519541 associates Disease focal epilepsy. Disease focal epilepsy associates Gene KCNQ5. Disease focal epilepsy associates Gene EPB41L1. Variant rs1057519525 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CACNA1I. Variant rs1057519554 associates Disease focal epilepsy. Variant rs587784440 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CAMK2B. Variant rs200694691 associates Disease focal epilepsy. Variant rs587780455 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CAMK2A. Disease focal epilepsy associates Gene SLC33A1. Disease focal epilepsy associates Gene SCN9A. Disease focal epilepsy associates Gene KIF1A. Disease focal epilepsy associates Gene CHRNB2. Variant rs1318322 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CHRNA4. Disease focal epilepsy associates Gene GJC2. Disease focal epilepsy associates Gene CSNK2B. Disease focal epilepsy associates Gene CHRNA2. Disease focal epilepsy associates Gene NBEA. Disease focal epilepsy associates Gene KCNQ2. Variant rs121917993 associates Disease focal epilepsy. Disease developmental and epileptic encephalopathy 93 associates Gene ATP6V1A. Disease developmental and epileptic encephalopathy 93 presents Symptom Seizures. Disease developmental and epileptic encephalopathy 93 presents Symptom Seizure. Disease developmental and epileptic encephalopathy 93 presents Symptom Seizures, Febrile. Variant rs573903898 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs896341039 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1057520468 associates Disease cortical dysplasia-focal epilepsy syndrome.. Variant rs139234992 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1057522590 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs368905425 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs142623983 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs893619983 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs575958976 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs142149051 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1325468046 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1423537879 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1329353667 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs142984073 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs200823464 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1444957856 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1359189375 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs587780903 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1269648909 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1057522233 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1427207833 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs369699763 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs139930720 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1374907989 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs114585910 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs370377093 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1795663851 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs927092071 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1169812593 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1034170979 associates Disease cortical dysplasia-focal epilepsy syndrome. Variant rs1739694635 associates Disease developmental and epileptic encephalopathy 24. Variant rs1469192494 associates Disease developmental and epileptic encephalopathy 24. Variant rs1745671912 associates Disease developmental and epileptic encephalopathy 24. Variant rs1057519547 associates Disease developmental and epileptic encephalopathy 24.. Variant rs1057519548 associates Disease developmental and epileptic encephalopathy 24. Variant rs1739691061 associates Disease developmental and epileptic encephalopathy 24. Variant rs1057521989 associates Disease developmental and epileptic encephalopathy 24. Variant rs1561081327 associates Disease developmental and epileptic encephalopathy 24. \\nQuestion: Out of the given list, which Gene is associated with focal epilepsy and epilepsy. Given list is: SCN1A, ABCG2, DTNB, LRMDA, CPS1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988488.2985404}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42b8a0b4d9b61b464e09679203abd49c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42b8a0b4d9b61b464e09679203abd49c/output.pkl Binary files differnew file mode 100644 index 0000000..9b213dc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42b8a0b4d9b61b464e09679203abd49c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42cb6596a4879a030b0cf2ef457737fa/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42cb6596a4879a030b0cf2ef457737fa/metadata.json new file mode 100644 index 0000000..ae7549a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42cb6596a4879a030b0cf2ef457737fa/metadata.json @@ -0,0 +1 @@ +{"duration": 0.45890021324157715, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs2187668 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Gene MIR1299 associates Disease rheumatic heart disease. Gene MIR3909 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Variant rs10794501 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR205 associates Disease rheumatic heart disease. Disease ontology identifier of rheumatic heart disease is DOID:0050827. Disease rheumatic heart disease resembles Disease rheumatic fever. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and rheumatic heart disease. Given list is: KAT2B, HLA-DQB1, GSDMB, ALDH1A2, THADA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989649.7281737}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42cb6596a4879a030b0cf2ef457737fa/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42cb6596a4879a030b0cf2ef457737fa/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/42cb6596a4879a030b0cf2ef457737fa/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a3629fe0cb444cf55336097e850c03/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a3629fe0cb444cf55336097e850c03/metadata.json new file mode 100644 index 0000000..e5d3d21 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a3629fe0cb444cf55336097e850c03/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5909404754638672, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ulcerative colitis and Crohn's disease. Given list is: ZFHX3, OPTN, EML4, IL23R, STN1\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990127.4759011}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a3629fe0cb444cf55336097e850c03/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a3629fe0cb444cf55336097e850c03/output.pkl Binary files differnew file mode 100644 index 0000000..4d7578e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a3629fe0cb444cf55336097e850c03/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a4fff1220b31acbd09884d51ba6a64/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a4fff1220b31acbd09884d51ba6a64/metadata.json new file mode 100644 index 0000000..fe1e222 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a4fff1220b31acbd09884d51ba6a64/metadata.json @@ -0,0 +1 @@ +{"duration": 6.857034683227539, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with collagenous colitis and autoimmune hepatitis. Given list is: CACNA1D, HLA-DQA1, AKAP6, MST1, NTM'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047731.7473586}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a4fff1220b31acbd09884d51ba6a64/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a4fff1220b31acbd09884d51ba6a64/output.pkl Binary files differnew file mode 100644 index 0000000..c69416f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/44a4fff1220b31acbd09884d51ba6a64/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/456692ceb02e346dfd79b6141137678c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/456692ceb02e346dfd79b6141137678c/metadata.json new file mode 100644 index 0000000..61d9631 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/456692ceb02e346dfd79b6141137678c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5934083461761475, "input_args": {"instruction": "'Context: Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs78378222 associates Disease triple-receptor negative breast cancer.. Variant rs149934734 associates Disease uterine fibroid. Variant rs4858590 associates Disease uterine fibroid. Variant rs4975538 associates Disease uterine fibroid. Variant rs149787529 associates Disease uterine fibroid. Variant rs4821939 associates Disease uterine fibroid. Variant rs61889186 associates Disease uterine fibroid. Variant rs551980034 associates Disease uterine fibroid. Variant rs4684433 associates Disease uterine fibroid. Variant rs4821936 associates Disease uterine fibroid. Variant rs6901631 associates Disease uterine fibroid. Variant rs566396343 associates Disease uterine fibroid. Variant rs8105767 associates Disease uterine fibroid. Variant rs5792315 associates Disease uterine fibroid. Variant rs55819434 associates Disease uterine fibroid. Variant rs540409605 associates Disease uterine fibroid. Variant rs6903575 associates Disease uterine fibroid. Variant rs9548898 associates Disease uterine fibroid. Variant rs4785384 associates Disease uterine fibroid. Variant rs12674731 associates Disease uterine fibroid. Variant rs56263516 associates Disease uterine fibroid. Variant rs199469675 associates Disease uterine fibroid. Variant rs12484951 associates Disease uterine fibroid. Variant rs17361789 associates Disease uterine fibroid. Variant rs1604744 associates Disease uterine fibroid. Variant rs199469681 associates Disease uterine fibroid. Variant rs6563799 associates Disease uterine fibroid. Variant rs199469677 associates Disease uterine fibroid. Variant rs199469678 associates Disease uterine fibroid. Variant rs11692588 associates Disease uterine fibroid. Variant rs12479436 associates Disease uterine fibroid. Variant rs199469685 associates Disease uterine fibroid. Variant rs58400555 associates Disease uterine fibroid. Variant rs6563812 associates Disease uterine fibroid. Variant rs12484776 associates Disease uterine fibroid. Variant rs12484438 associates Disease uterine fibroid. Variant rs58415480 associates Disease uterine fibroid. Variant rs11637932 associates Disease uterine fibroid. Variant rs1592471112 associates Disease uterine fibroid. Variant rs148143917 associates Disease uterine fibroid. Variant rs41293836 associates Disease uterine fibroid. Variant rs4402860 associates Disease uterine fibroid. Variant rs199469688 associates Disease uterine fibroid. Variant rs3804984 associates Disease uterine fibroid. Variant rs35569312 associates Disease uterine fibroid. Variant rs11887109 associates Disease uterine fibroid. Variant rs199469676 associates Disease uterine fibroid. Variant rs199469682 associates Disease uterine fibroid. Variant rs199469683 associates Disease uterine fibroid. Variant rs199469689 associates Disease uterine fibroid. Variant rs775444277 associates Disease uterine fibroid. Variant rs11786929 associates Disease uterine fibroid. Variant rs199469680 associates Disease uterine fibroid. Variant rs507139 associates Disease uterine fibroid. Variant rs199469679 associates Disease uterine fibroid. Variant rs6861925 associates Disease uterine fibroid. Variant rs1060499630 associates Disease uterine fibroid. Variant rs62323681 associates Disease uterine fibroid. Variant rs199469693 associates Disease uterine fibroid. Variant rs17879961 associates Disease uterine fibroid. Variant rs199469690 associates Disease uterine fibroid. Variant rs34933909 associates Disease uterine fibroid. Variant rs7815798 associates Disease uterine fibroid. Variant rs4335411 associates Disease uterine fibroid. Variant rs199469684 associates Disease uterine fibroid. Variant rs2251795 associates Disease uterine fibroid. Variant rs199469669 associates Disease uterine fibroid. Variant rs188539274 associates Disease uterine fibroid. Variant rs199469686 associates Disease uterine fibroid. Variant rs4699299 associates Disease uterine fibroid. Variant rs2277339 associates Disease uterine fibroid. Variant rs199469687 associates Disease uterine fibroid. Variant rs199469691 associates Disease uterine fibroid. Variant rs10976689 associates Disease uterine fibroid. Variant rs17631680 associates Disease uterine fibroid. Variant rs141379009 associates Disease uterine fibroid. \\nQuestion: Out of the given list, which Variant is associated with triple-receptor negative breast cancer and uterine fibroid. Given list is: rs4459895, rs8176719, rs115879499, rs78378222, rs2143571'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048867.994677}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/456692ceb02e346dfd79b6141137678c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/456692ceb02e346dfd79b6141137678c/output.pkl Binary files differnew file mode 100644 index 0000000..11246fc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/456692ceb02e346dfd79b6141137678c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45702c48fd665e804aebd799746195eb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45702c48fd665e804aebd799746195eb/metadata.json new file mode 100644 index 0000000..f564962 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45702c48fd665e804aebd799746195eb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6654901504516602, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and central nervous system cancer. Given list is: POU5F1B, SCN1A, STAT4, TERT, BTNL2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048363.4990127}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45702c48fd665e804aebd799746195eb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45702c48fd665e804aebd799746195eb/output.pkl Binary files differnew file mode 100644 index 0000000..a8e3000 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45702c48fd665e804aebd799746195eb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/458492c82850634e879041498436333c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/458492c82850634e879041498436333c/metadata.json new file mode 100644 index 0000000..42d5e77 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/458492c82850634e879041498436333c/metadata.json @@ -0,0 +1 @@ +{"duration": 1.456777811050415, "input_args": {"instruction": "'Context: Disease UV-sensitive syndrome isa Disease autosomal recessive disease. Disease UV-sensitive syndrome isa Disease skin disease. Disease autosomal recessive nonsyndromic deafness 21 isa Disease autosomal recessive nonsyndromic deafness. \\nQuestion: Out of the given list, which Variant is associated with skin sensitivity to sun and age-related hearing impairment. Given list is: rs61815704, rs4149909, rs36001488, rs1333047, rs1126809'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049112.5236676}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/458492c82850634e879041498436333c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/458492c82850634e879041498436333c/output.pkl Binary files differnew file mode 100644 index 0000000..ce6e3cf --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/458492c82850634e879041498436333c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4588ef815cd6c7cf8065b77447cefc0f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4588ef815cd6c7cf8065b77447cefc0f/metadata.json new file mode 100644 index 0000000..1655eb0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4588ef815cd6c7cf8065b77447cefc0f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5910983085632324, "input_args": {"instruction": "'Context: Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT16. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene KRT14. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene MBTPS2. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene SMARCAD1. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene GJB3. Disease epidermodysplasia verruciformis resembles Disease keratosis. Disease keratosis associates Gene ATP2A2. Disease keratosis presents Symptom Erythema. Disease keratosis associates Gene CAST. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene TAT. Disease keratosis associates Gene PERP. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene KANK2. Disease keratosis associates Gene VPS33B. Disease keratosis presents Symptom Skin Manifestations. Disease keratosis associates Gene GJA1. Disease keratosis resembles Disease acrodermatitis. Disease nonepidermolytic palmoplantar keratoderma resembles Disease keratosis. Disease acrokeratosis verruciformis isa Disease keratosis. Disease keratosis associates Gene SNAP29. Disease erythrokeratodermia variabilis resembles Disease keratosis. Disease keratosis presents Symptom Oral Manifestations. Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene TNFRSF13C. Disease vasculitis associates Gene PRKCD. Disease vasculitis associates Gene TLR4. Disease vasculitis associates Gene KLRC4. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene CCR1. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene P4HA2. Disease vasculitis associates Gene IL12RB1. Disease vasculitis associates Gene UBAC2. Disease vasculitis associates Gene SYK. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene IL12A. Disease vasculitis associates Gene MVK. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene MYD88. Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene TNFRSF13C. Disease vasculitis associates Gene PRKCD. Disease vasculitis associates Gene TLR4. Disease vasculitis associates Gene KLRC4. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene CCR1. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene P4HA2. Disease vasculitis associates Gene IL12RB1. Disease vasculitis associates Gene UBAC2. Disease vasculitis associates Gene SYK. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene IL12A. Disease vasculitis associates Gene MVK. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene MYD88. \\nQuestion: Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and anti-neutrophil antibody associated vasculitis. Given list is: rs6679677, rs12187903, rs1333047, rs11585651, rs55730499'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050480.2635968}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4588ef815cd6c7cf8065b77447cefc0f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4588ef815cd6c7cf8065b77447cefc0f/output.pkl Binary files differnew file mode 100644 index 0000000..4095a9f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4588ef815cd6c7cf8065b77447cefc0f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45c35fbcea5aca1aca498cafa455f098/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45c35fbcea5aca1aca498cafa455f098/metadata.json new file mode 100644 index 0000000..c76ee77 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45c35fbcea5aca1aca498cafa455f098/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6723804473876953, "input_args": {"instruction": "'Context: Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Disease diffuse large B-cell lymphoma presents Symptom Arthralgia.. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Shoulder Pain. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene HLA-C. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MFSD4B. Disease psoriatic arthritis associates Gene IL12B. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Gene MIR424 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TRAF3IP2. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL13. Variant rs12191877 associates Disease psoriatic arthritis.. Variant rs458017 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Variant rs1610601 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNFAIP3. Disease psoriatic arthritis associates Gene DDR1. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs13017599 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and psoriatic arthritis. Given list is: ARMS2, RORA, TLR1, ADH1B, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048720.0173364}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45c35fbcea5aca1aca498cafa455f098/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45c35fbcea5aca1aca498cafa455f098/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45c35fbcea5aca1aca498cafa455f098/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45e6ae79d383e32237f4abac1261722f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45e6ae79d383e32237f4abac1261722f/metadata.json new file mode 100644 index 0000000..c2006f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45e6ae79d383e32237f4abac1261722f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5483386516571045, "input_args": {"instruction": "'Context: Disease non-alcoholic steatohepatitis associates Gene PNPLA3. Variant rs12077210 associates Disease non-alcoholic steatohepatitis.. Disease non-alcoholic fatty liver disease associates Gene HLA-DQA1. Variant rs12454712 associates Disease non-alcoholic fatty liver disease. Variant rs2070669 associates Disease non-alcoholic fatty liver disease. Variant rs624698 associates Disease non-alcoholic fatty liver disease. Variant rs4819649 associates Disease non-alcoholic fatty liver disease. Variant rs4604455 associates Disease non-alcoholic fatty liver disease. Disease non-alcoholic fatty liver disease associates Gene PNPLA3. Variant rs10401969 associates Disease non-alcoholic fatty liver disease. Variant rs11653507 associates Disease non-alcoholic fatty liver disease. Variant chr17:66085081 associates Disease non-alcoholic fatty liver disease. Variant rs4835021 associates Disease non-alcoholic fatty liver disease. Variant rs58489806 associates Disease non-alcoholic fatty liver disease. Variant rs9604818 associates Disease non-alcoholic fatty liver disease. Variant chr10:114779557 associates Disease non-alcoholic fatty liver disease. Variant rs2896019 associates Disease non-alcoholic fatty liver disease. Variant chr7:130438531 associates Disease non-alcoholic fatty liver disease. Variant rs9271406 associates Disease non-alcoholic fatty liver disease. Variant rs58542926 associates Disease non-alcoholic fatty liver disease. Variant rs41290534 associates Disease non-alcoholic fatty liver disease. Variant rs1248890 associates Disease non-alcoholic fatty liver disease. Variant rs9272699 associates Disease non-alcoholic fatty liver disease. Variant rs5021727 associates Disease non-alcoholic fatty liver disease. Variant rs141783576 associates Disease non-alcoholic fatty liver disease. Variant rs9922619 associates Disease non-alcoholic fatty liver disease. Variant rs492602 associates Disease non-alcoholic fatty liver disease. Variant rs1169289 associates Disease non-alcoholic fatty liver disease. Variant chr3:47294950 associates Disease non-alcoholic fatty liver disease. Variant rs1044531 associates Disease non-alcoholic fatty liver disease. Variant rs28657030 associates Disease non-alcoholic fatty liver disease. Variant rs10108430 associates Disease non-alcoholic fatty liver disease. Variant rs4135275 associates Disease non-alcoholic fatty liver disease. Variant rs9271325 associates Disease non-alcoholic fatty liver disease. Variant rs355910 associates Disease non-alcoholic fatty liver disease. Variant rs6006469 associates Disease non-alcoholic fatty liver disease. Variant rs9908820 associates Disease non-alcoholic fatty liver disease. Variant rs4940694 associates Disease non-alcoholic fatty liver disease. Variant rs60286666 associates Disease non-alcoholic fatty liver disease. Variant rs6994124 associates Disease non-alcoholic fatty liver disease. Variant rs41275531 associates Disease non-alcoholic fatty liver disease. Variant rs2274685 associates Disease non-alcoholic fatty liver disease. Variant rs598747 associates Disease non-alcoholic fatty liver disease. Variant rs1260326 associates Disease non-alcoholic fatty liver disease. Variant rs2143571 associates Disease non-alcoholic fatty liver disease. Variant rs6802898 associates Disease non-alcoholic fatty liver disease. Variant rs6583826 associates Disease non-alcoholic fatty liver disease. Variant chr1:89255345 associates Disease non-alcoholic fatty liver disease. Variant rs2642442 associates Disease non-alcoholic fatty liver disease. \\nQuestion: Out of the given list, which Gene is associated with non-alcoholic steatohepatitis and non-alcoholic fatty liver disease. Given list is: HLA-DQB2, ZFPM2, KALRN, PNPLA3, DENND1A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990063.2759438}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45e6ae79d383e32237f4abac1261722f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45e6ae79d383e32237f4abac1261722f/output.pkl Binary files differnew file mode 100644 index 0000000..f32c41b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/45e6ae79d383e32237f4abac1261722f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/464d992763c30e5bfea446a0e3801437/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/464d992763c30e5bfea446a0e3801437/metadata.json new file mode 100644 index 0000000..8708863 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/464d992763c30e5bfea446a0e3801437/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5966024398803711, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cutaneous lupus erythematosus and cervix carcinoma. Given list is: PRX, CDK8, HIP1, HLA-DQA1, RAD51B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047941.254246}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/464d992763c30e5bfea446a0e3801437/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/464d992763c30e5bfea446a0e3801437/output.pkl Binary files differnew file mode 100644 index 0000000..b20d501 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/464d992763c30e5bfea446a0e3801437/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4693d93e3aa49ca2a502f6689298514c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4693d93e3aa49ca2a502f6689298514c/metadata.json new file mode 100644 index 0000000..690549c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4693d93e3aa49ca2a502f6689298514c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6375529766082764, "input_args": {"instruction": "'Context: Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1232712 associates Disease idiopathic pulmonary fibrosis. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene HLA-DRB1. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene KIF15. Variant chr11:1102586 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs7725218 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs79684490 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene PTPN14. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Disease interstitial lung disease associates Gene COL3A1. Disease interstitial lung disease associates Gene HLA-DPB1. Disease interstitial lung disease associates Gene TGFB1. Disease interstitial lung disease associates Gene HLA-B. Disease interstitial lung disease associates Gene SFTPA1. Variant rs116906005 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene CASP10. Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene CFAP221. Disease interstitial lung disease associates Gene CFAP298. Disease interstitial lung disease associates Gene SLC6A14. Disease interstitial lung disease associates Gene PTPN22. Disease interstitial lung disease associates Gene SFTPB. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CFTR. Disease interstitial lung disease associates Gene FOXJ1. Variant rs2034650 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-DRB1. Variant rs12702634 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA2. Disease interstitial lung disease associates Gene SFTPC. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene CFAP300. Variant rs12610495 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene DNAJB13. Disease interstitial lung disease associates Gene DNAH11. Disease interstitial lung disease associates Gene CCR6. Disease interstitial lung disease associates Gene NKX2-1. Variant rs35705950 associates Disease interstitial lung disease. Variant rs2076295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TP53. Disease interstitial lung disease associates Gene HFE. Disease interstitial lung disease associates Gene SP110. Disease interstitial lung disease associates Gene DNAI1. Disease interstitial lung disease associates Gene ZNFX1. Disease interstitial lung disease associates Gene DNAH1. Disease interstitial lung disease associates Gene DNAAF4. Disease interstitial lung disease associates Gene DNAAF6. Disease interstitial lung disease associates Gene DNAAF5. Disease interstitial lung disease associates Gene EIF2AK4. Disease interstitial lung disease associates Gene DNAAF3. Disease interstitial lung disease associates Gene PLPPR1. Disease interstitial lung disease associates Gene AP3B1. Disease interstitial lung disease associates Gene DNAAF2. Variant rs4727443 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-DPA1. Disease interstitial lung disease associates Gene CCDC65. Disease interstitial lung disease associates Gene SLC26A9. Disease interstitial lung disease associates Gene CCDC103. Disease interstitial lung disease associates Gene TERT. Variant rs2609255 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NPC2. Variant rs6886640 associates Disease interstitial lung disease. Variant rs6631122 associates Disease interstitial lung disease. Variant rs1278769 associates Disease interstitial lung disease. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ZSWIM7. Disease interstitial lung disease associates Gene IL2RA. Variant rs2957316 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ZCCHC8. Disease interstitial lung disease associates Gene CCDC40. Disease interstitial lung disease associates Gene FAM13A. Variant rs73199442 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SPEF2. Disease interstitial lung disease associates Gene DKC1. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and interstitial lung disease. Given list is: COL22A1, KIF1B, TERT, CLPTM1L, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989530.9617567}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4693d93e3aa49ca2a502f6689298514c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4693d93e3aa49ca2a502f6689298514c/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4693d93e3aa49ca2a502f6689298514c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/46fe8775d8daadb07c2bc1e5975841f7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/46fe8775d8daadb07c2bc1e5975841f7/metadata.json new file mode 100644 index 0000000..d770e72 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/46fe8775d8daadb07c2bc1e5975841f7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6059865951538086, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with rheumatoid arthritis and myositis. Given list is: STAT3, BARD1, PTPN22, PRKN, C5AR1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989890.6704137}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/46fe8775d8daadb07c2bc1e5975841f7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/46fe8775d8daadb07c2bc1e5975841f7/output.pkl Binary files differnew file mode 100644 index 0000000..75cdebb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/46fe8775d8daadb07c2bc1e5975841f7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4795347c553df8756f4902881938e9a0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4795347c553df8756f4902881938e9a0/metadata.json new file mode 100644 index 0000000..3096ae1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4795347c553df8756f4902881938e9a0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.456606388092041, "input_args": {"instruction": "'Context: Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene PLCE1. Disease gastric fundus cancer associates Gene MUC1. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene ABO. Disease gastric fundus cancer associates Gene THBS3. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene MEN1. Variant rs2294008 associates Disease duodenal ulcer.. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer isa Disease peptic ulcer disease. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer associates Gene JRK. Disease duodenal ulcer localizes Anatomy ventral pancreatic duct. Disease ontology identifier of duodenal ulcer is DOID:1724. Disease duodenal ulcer presents Symptom Abdominal Pain. \\nQuestion: Out of the given list, which Gene is associated with gastric fundus cancer and duodenal ulcer. Given list is: GSDMB, PSCA, CDKAL1, EML4, ADH1B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048817.2961967}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4795347c553df8756f4902881938e9a0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4795347c553df8756f4902881938e9a0/output.pkl Binary files differnew file mode 100644 index 0000000..33ad383 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4795347c553df8756f4902881938e9a0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47acd096fa26da3da5c9671e6bb2bc2c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47acd096fa26da3da5c9671e6bb2bc2c/metadata.json new file mode 100644 index 0000000..ff23b53 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47acd096fa26da3da5c9671e6bb2bc2c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5145328044891357, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with head and neck cancer and liver cirrhosis. Given list is: TFAP2B, TERT, USHBP1, CACNA2D1, CRTC1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989947.6397111}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47acd096fa26da3da5c9671e6bb2bc2c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47acd096fa26da3da5c9671e6bb2bc2c/output.pkl Binary files differnew file mode 100644 index 0000000..66a0556 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47acd096fa26da3da5c9671e6bb2bc2c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47e9e82347a9b79475ee14d102ff26c1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47e9e82347a9b79475ee14d102ff26c1/metadata.json new file mode 100644 index 0000000..80a16ed --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47e9e82347a9b79475ee14d102ff26c1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7880315780639648, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with autoimmune disease and keratinocyte carcinoma\"@e. Given list is: rs259919, rs10455872, rs11958220, rs72928038, rs141343442'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049117.2991974}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47e9e82347a9b79475ee14d102ff26c1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47e9e82347a9b79475ee14d102ff26c1/output.pkl Binary files differnew file mode 100644 index 0000000..53a43ec --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/47e9e82347a9b79475ee14d102ff26c1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a3e7aec08e52e2dbc52a1e74fe5bff8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a3e7aec08e52e2dbc52a1e74fe5bff8/metadata.json new file mode 100644 index 0000000..69d2bd4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a3e7aec08e52e2dbc52a1e74fe5bff8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5040853023529053, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and central nervous system cancer. Given list is: LOXL1, TERT, KALRN, RP1, IL6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047673.9460547}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a3e7aec08e52e2dbc52a1e74fe5bff8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a3e7aec08e52e2dbc52a1e74fe5bff8/output.pkl Binary files differnew file mode 100644 index 0000000..de748cf --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a3e7aec08e52e2dbc52a1e74fe5bff8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a9ebb705485086d9014cccc321debdb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a9ebb705485086d9014cccc321debdb/metadata.json new file mode 100644 index 0000000..e105507 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a9ebb705485086d9014cccc321debdb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6285130977630615, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and lung adenocarcinoma. Given list is: RP1, RBFOX1, TP53, PRKAG2, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048807.0144577}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a9ebb705485086d9014cccc321debdb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a9ebb705485086d9014cccc321debdb/output.pkl Binary files differnew file mode 100644 index 0000000..8fc0cdc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4a9ebb705485086d9014cccc321debdb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc763047c6d7a77916800be97d5780/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc763047c6d7a77916800be97d5780/metadata.json new file mode 100644 index 0000000..75102a4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc763047c6d7a77916800be97d5780/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5413942337036133, "input_args": {"instruction": "'Context: Variant rs3132468 associates Disease dengue hemorrhagic fever.. Variant rs3765524 associates Disease dengue hemorrhagic fever. Disease dengue hemorrhagic fever associates Gene PLCE1. Disease dengue hemorrhagic fever associates Gene MICB. Disease dengue hemorrhagic fever presents Symptom Fever. Disease dengue hemorrhagic fever presents Symptom Diarrhea. Disease dengue hemorrhagic fever presents Symptom Fever of Unknown Origin. Disease dengue hemorrhagic fever presents Symptom Hemoptysis. Disease dengue hemorrhagic fever presents Symptom Proteinuria. Disease wheat allergy associates Gene RBFOX1. Variant rs9271588 associates Disease wheat allergy.. Variant rs59325236 associates Disease wheat allergy. Variant HLA-DPB2*01:01:02 associates Disease wheat allergy. \\nQuestion: Out of the given list, which Gene is associated with dengue hemorrhagic fever and wheat allergy. Given list is: RBFOX1, EPDR1, BABAM1, PTPN22, WNT4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989945.6810005}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc763047c6d7a77916800be97d5780/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc763047c6d7a77916800be97d5780/output.pkl Binary files differnew file mode 100644 index 0000000..cab6c52 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc763047c6d7a77916800be97d5780/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc803b44ab7c7384791fce22f8246d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc803b44ab7c7384791fce22f8246d/metadata.json new file mode 100644 index 0000000..1fbeee6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc803b44ab7c7384791fce22f8246d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8867447376251221, "input_args": {"instruction": "'Context: Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene KRT16. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene PERP. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene GJB3. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene KRT6C. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene GJA1. Disease keratosis associates Gene KANK2. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene SASH1. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene CAST. Disease keratosis associates Gene DSG1. Disease keratosis associates Gene GJB6. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene TAT. Disease squamous cell papilloma resembles Disease keratosis. Disease keratosis resembles Disease occupational dermatitis. Disease keratosis associates Gene JUP. Disease keratosis resembles Disease acrodermatitis. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene VPS33B. Disease keratosis associates Gene DSP. Disease keratosis localizes Anatomy mucosa of larynx. Disease autoimmune disease associates Gene PRKCQ. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene XRCC6.. Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene XRCC5. Disease autoimmune disease associates Gene CLEC16A. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene KIF5A. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene HLA-DPB1. Disease autoimmune disease associates Gene SLC26A4. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene ERBB3. Disease autoimmune disease associates Gene PRKCD. Disease autoimmune disease associates Gene SCGB3A2. Disease autoimmune disease associates Gene CCL2. Disease autoimmune disease associates Gene FOXP3. Disease autoimmune disease associates Gene CCL21. Disease autoimmune disease associates Gene ZFP36L1. Disease autoimmune disease associates Gene IKZF3. Disease autoimmune disease associates Gene NFKBIL1. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene IKZF4. Disease autoimmune disease associates Gene GATA3. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene NFKB2. Disease autoimmune disease associates Gene VDR. Disease autoimmune disease associates Gene NFKB1. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene UBE2L3. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene IKZF1. Disease autoimmune disease associates Gene HLA-DMB. Disease autoimmune disease associates Gene KLRK1. Disease autoimmune disease associates Gene CYP27B1. Disease autoimmune disease associates Gene MICA. Disease autoimmune disease associates Gene CD58. Disease autoimmune disease of skin and connective tissue isa Disease autoimmune disease. Disease autoimmune disease associates Gene HSPA1B. Disease autoimmune disease associates Gene TYK2. Disease autoimmune disease associates Gene ABCB1. Disease autoimmune disease associates Gene ULBP3. Disease autoimmune disease associates Gene STAT3. Disease autoimmune disease associates Gene LACC1. \\nQuestion: Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and autoimmune disease. Given list is: rs7936312, rs325485, rs13191786, rs72928038, rs7523907'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049054.9729154}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc803b44ab7c7384791fce22f8246d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc803b44ab7c7384791fce22f8246d/output.pkl Binary files differnew file mode 100644 index 0000000..6fc9913 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4abc803b44ab7c7384791fce22f8246d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ace8cdb7e75ed6acba0c01ceed97436/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ace8cdb7e75ed6acba0c01ceed97436/metadata.json new file mode 100644 index 0000000..6d905f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ace8cdb7e75ed6acba0c01ceed97436/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7624762058258057, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and Takayasu's arteritis. Given list is: GTF2I, HLA-DQA1, HLA-B, CRTC1, RORA\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048300.4810405}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ace8cdb7e75ed6acba0c01ceed97436/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ace8cdb7e75ed6acba0c01ceed97436/output.pkl Binary files differnew file mode 100644 index 0000000..df0b711 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ace8cdb7e75ed6acba0c01ceed97436/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4bf4be8fd8b1c85ce51f1204a83fe2ff/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4bf4be8fd8b1c85ce51f1204a83fe2ff/metadata.json new file mode 100644 index 0000000..3c228ce --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4bf4be8fd8b1c85ce51f1204a83fe2ff/metadata.json @@ -0,0 +1 @@ +{"duration": 9.811748504638672, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with androgenic alopecia and squamous cell carcinoma. Given list is: rs10273639, rs334, rs595244, rs6457327, rs12203592'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048983.4330547}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4bf4be8fd8b1c85ce51f1204a83fe2ff/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4bf4be8fd8b1c85ce51f1204a83fe2ff/output.pkl Binary files differnew file mode 100644 index 0000000..713dd50 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4bf4be8fd8b1c85ce51f1204a83fe2ff/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c2b63b941bfbd4f14e321d8bce5d55a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c2b63b941bfbd4f14e321d8bce5d55a/metadata.json new file mode 100644 index 0000000..0f0ffc1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c2b63b941bfbd4f14e321d8bce5d55a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5494115352630615, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with mature B-cell neoplasm and cocaine dependence. Given list is: TLR1, SLC14A2, SCN1A, IL12RB2, PLG'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989593.3550224}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c2b63b941bfbd4f14e321d8bce5d55a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c2b63b941bfbd4f14e321d8bce5d55a/output.pkl Binary files differnew file mode 100644 index 0000000..966467e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c2b63b941bfbd4f14e321d8bce5d55a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c68b1615d57d19e73e7e6ff81d8f0c1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c68b1615d57d19e73e7e6ff81d8f0c1/metadata.json new file mode 100644 index 0000000..ee6176e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c68b1615d57d19e73e7e6ff81d8f0c1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4519190788269043, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with malaria and duodenal ulcer. Given list is: TP53, ABO, HLA-DPA1, ADGRV1, GNE'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988481.0213323}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c68b1615d57d19e73e7e6ff81d8f0c1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c68b1615d57d19e73e7e6ff81d8f0c1/output.pkl Binary files differnew file mode 100644 index 0000000..6f0f773 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4c68b1615d57d19e73e7e6ff81d8f0c1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d51776548cac6255d44ee4090b2e460/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d51776548cac6255d44ee4090b2e460/metadata.json new file mode 100644 index 0000000..103330c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d51776548cac6255d44ee4090b2e460/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5432171821594238, "input_args": {"instruction": "'Context: Gene MIR663A associates Disease lupus nephritis. Gene MIR146A associates Disease lupus nephritis. Gene MIR326 associates Disease lupus nephritis. Gene MIR423 associates Disease lupus nephritis. Gene MIR1224 associates Disease lupus nephritis. Gene MIR638 associates Disease lupus nephritis. Gene MIR3135B associates Disease lupus nephritis. Gene MIR130B associates Disease lupus nephritis. Gene MIR148A associates Disease lupus nephritis. Gene MIR125A associates Disease lupus nephritis. Gene MIR150 associates Disease lupus nephritis. Gene MIR145 associates Disease lupus nephritis. Gene MIR654 associates Disease lupus nephritis. Gene MIR151A associates Disease lupus nephritis. Disease lupus nephritis resembles Disease membranous glomerulonephritis. Gene MIR127 associates Disease lupus nephritis. Compound (3S,6S,9S,12S,15S,18S,21S,24S,30S,33S)-30-ethyl-33-[(1R,2R,4E)-1-hydroxy-2-methylhepta-4,6-dienyl]-1,4,7,10,12,15,19,25,28-nonamethyl-6,9,18,24-tetrakis(2-methylpropyl)-3,21-di(propan-2-yl)-1,4,7,10,13,16,19,22,25,28,31-undecazacyclotritriacontane-2,5,8,11,14,17,20,23,26,29,32-undecone treats Disease lupus nephritis. Disease lupus erythematosus associates Gene C4B. Disease lupus erythematosus associates Gene C4A. Disease lupus erythematosus associates Gene PTPN22. Disease lupus erythematosus associates Gene FCGR2B. Disease lupus erythematosus associates Gene ITGAM. Disease lupus erythematosus associates Gene SAA1. Disease lupus erythematosus associates Gene SAA2. Disease lupus erythematosus associates Gene TLR5. Disease lupus erythematosus associates Gene NCF2. Variant rs1599507415 associates Disease membranoproliferative glomerulonephritis.. Disease membranoproliferative glomerulonephritis associates Gene DNASE2. Disease membranoproliferative glomerulonephritis associates Gene ZNFX1. Disease membranoproliferative glomerulonephritis associates Gene LMNB2. Disease membranoproliferative glomerulonephritis associates Gene C1QA. Disease membranoproliferative glomerulonephritis associates Gene C1QB. Disease membranoproliferative glomerulonephritis associates Gene C1QC. Disease membranoproliferative glomerulonephritis associates Gene CFHR2. Disease membranoproliferative glomerulonephritis associates Gene SLC37A4. Disease membranoproliferative glomerulonephritis associates Gene CFHR3. Disease membranoproliferative glomerulonephritis associates Gene CFHR5. Disease membranoproliferative glomerulonephritis associates Gene SOX18. Disease ontology identifier of membranoproliferative glomerulonephritis is DOID:2920. Disease membranoproliferative glomerulonephritis associates Gene DGKE. Variant chr6:32614963 associates Disease systemic lupus erythematosus. Variant chr12:12874462 associates Disease systemic lupus erythematosus. Variant chr6:106564236 associates Disease systemic lupus erythematosus. Variant HLA-DQA1*05:01 associates Disease systemic lupus erythematosus. Variant rs1966002 associates Disease systemic lupus erythematosus. Variant rs144615291 associates Disease systemic lupus erythematosus. Variant chr7:74196185 associates Disease systemic lupus erythematosus. Variant chr10:50076325 associates Disease systemic lupus erythematosus. Variant chr6:138190533 associates Disease systemic lupus erythematosus. Variant chr1:173191475 associates Disease systemic lupus erythematosus. Variant DQB1*03:01 associates Disease systemic lupus erythematosus. Variant DQB1*02:01 associates Disease systemic lupus erythematosus. Variant chr1:206735148 associates Disease systemic lupus erythematosus. Variant DQB1*05:03 associates Disease systemic lupus erythematosus. Variant DQB1*05:01 associates Disease systemic lupus erythematosus. Variant DQA1*03:01 associates Disease systemic lupus erythematosus. Variant DQB1*06:02 associates Disease systemic lupus erythematosus. Variant DQA1*02:01 associates Disease systemic lupus erythematosus. Variant rs4252665 associates Disease systemic lupus erythematosus. Variant DQA1*05:01 associates Disease systemic lupus erythematosus. Variant DQB1*03:02 associates Disease systemic lupus erythematosus. Variant DQA1*01:05 associates Disease systemic lupus erythematosus. Variant rs10954214 associates Disease systemic lupus erythematosus. Variant DQA1*01:04 associates Disease systemic lupus erythematosus. Variant DQA1*03:03 associates Disease systemic lupus erythematosus. Variant DQA1*01:02 associates Disease systemic lupus erythematosus. Variant chr7:128575797 associates Disease systemic lupus erythematosus. Variant rs13260060 associates Disease systemic lupus erythematosus. Variant rs9652601 associates Disease systemic lupus erythematosus. Variant DQB1*03:03 associates Disease systemic lupus erythematosus. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Variant rs3132580 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene TCF19. Variant rs3134945 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene FOXP3. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs1265159 associates Disease membranous glomerulonephritis. Variant rs9405192 associates Disease membranous glomerulonephritis. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs7750641 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Variant rs9272729 associates Disease membranous glomerulonephritis. Variant rs3130618 associates Disease membranous glomerulonephritis. Variant rs230540 associates Disease membranous glomerulonephritis.. Disease membranous glomerulonephritis associates Gene BTNL2. Variant rs3130544 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. Variant rs3129939 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene RNF5. Disease membranous glomerulonephritis associates Gene EGFL8. \\nQuestion: Out of the given list, which Gene is associated with membranous glomerulonephritis and cutaneous lupus erythematosus. Given list is: ZFHX3, HLA-DQA1, EPDR1, CRTC1, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988471.9515789}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d51776548cac6255d44ee4090b2e460/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d51776548cac6255d44ee4090b2e460/output.pkl Binary files differnew file mode 100644 index 0000000..ee95d1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d51776548cac6255d44ee4090b2e460/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d928dc9d552226e771b83e32b9e67d2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d928dc9d552226e771b83e32b9e67d2/metadata.json new file mode 100644 index 0000000..ebc295b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d928dc9d552226e771b83e32b9e67d2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8411135673522949, "input_args": {"instruction": "'Context: Variant rs886052046 associates Disease inflammatory bowel disease 1. Variant rs886052043 associates Disease inflammatory bowel disease 1. Variant rs886052049 associates Disease inflammatory bowel disease 1. Variant rs886052045 associates Disease inflammatory bowel disease 1. Variant rs886052044 associates Disease inflammatory bowel disease 1. Variant rs886052048 associates Disease inflammatory bowel disease 1. Variant rs1965489095 associates Disease inflammatory bowel disease 1. Variant rs1964416023 associates Disease inflammatory bowel disease 1. Variant rs1328584012 associates Disease inflammatory bowel disease 1. Variant rs1965233783 associates Disease inflammatory bowel disease 1. Variant rs104895432 associates Disease inflammatory bowel disease 1. Variant rs34684955 associates Disease inflammatory bowel disease 1. Variant rs547264433 associates Disease inflammatory bowel disease 1. Variant rs104895434 associates Disease inflammatory bowel disease 1. Variant rs104895431 associates Disease inflammatory bowel disease 1. Variant rs369766454 associates Disease inflammatory bowel disease 1. Variant rs104895438 associates Disease inflammatory bowel disease 1. Variant rs529640892 associates Disease inflammatory bowel disease 1. Variant rs104895422 associates Disease inflammatory bowel disease 1. Variant rs199475923 associates Disease inflammatory bowel disease 1. Variant rs142559533 associates Disease inflammatory bowel disease 1. Variant rs104895421 associates Disease inflammatory bowel disease 1. Variant rs61736932 associates Disease inflammatory bowel disease 1. Variant rs104895425 associates Disease inflammatory bowel disease 1. Variant rs5743269 associates Disease inflammatory bowel disease 1. Variant rs104895464 associates Disease inflammatory bowel disease 1. Variant rs104895452 associates Disease inflammatory bowel disease 1. Variant rs104895427 associates Disease inflammatory bowel disease 1. Variant rs104895454 associates Disease inflammatory bowel disease 1. Variant rs104895456 associates Disease inflammatory bowel disease 1. Variant rs200823786 associates Disease inflammatory bowel disease 13.. Variant rs202002337 associates Disease inflammatory bowel disease 13. Variant rs199676098 associates Disease inflammatory bowel disease 13. Disease inflammatory bowel disease 10 associates Gene ATG16L1.. Disease ankylosing spondylitis 1 associates Gene HLA-B.. Variant rs10065172 associates Disease inflammatory bowel disease 19.. \\nQuestion: Out of the given list, which Gene is associated with inflammatory bowel disease and ankylosing spondylitis. Given list is: HOXD3, HNF1B, TYR, IL23R, TRAF3IP2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988532.315507}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d928dc9d552226e771b83e32b9e67d2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d928dc9d552226e771b83e32b9e67d2/output.pkl Binary files differnew file mode 100644 index 0000000..9a8260a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4d928dc9d552226e771b83e32b9e67d2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4e354ab2aaabf8630d1a9497c6348d47/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4e354ab2aaabf8630d1a9497c6348d47/metadata.json new file mode 100644 index 0000000..f784802 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4e354ab2aaabf8630d1a9497c6348d47/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46596622467041016, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriasis and myelodysplastic syndrome. Given list is: NOD2, CHEK2, HLA-B, GCKR, PKNOX2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988416.2867086}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4e354ab2aaabf8630d1a9497c6348d47/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4e354ab2aaabf8630d1a9497c6348d47/output.pkl Binary files differnew file mode 100644 index 0000000..61fdab7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4e354ab2aaabf8630d1a9497c6348d47/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ef980951d180771fc56033493b82984/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ef980951d180771fc56033493b82984/metadata.json new file mode 100644 index 0000000..91749eb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ef980951d180771fc56033493b82984/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5408036708831787, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with membranous glomerulonephritis and cervix carcinoma. Given list is: PSCA, HLA-DQA1, KALRN, HLA-DQA1, HLA-DRB5'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988472.4970877}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ef980951d180771fc56033493b82984/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ef980951d180771fc56033493b82984/output.pkl Binary files differnew file mode 100644 index 0000000..126ad61 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/4ef980951d180771fc56033493b82984/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/506db27dc3b630dbf1e3a77462a8dca4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/506db27dc3b630dbf1e3a77462a8dca4/metadata.json new file mode 100644 index 0000000..130b396 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/506db27dc3b630dbf1e3a77462a8dca4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.45331501960754395, "input_args": {"instruction": "'Context: Disease lymphoma associates Gene HLA-DQB1. Disease lymphoma associates Gene HLA-DQA1. Disease lymphoma associates Gene HLA-DRB1. Variant rs12289961 associates Disease lymphoma. Disease lymphoma associates Gene SAA2. Variant rs9268853 associates Disease lymphoma. Disease lymphoma associates Gene SAA1. Disease lymphoma associates Gene NHP2. Variant rs864622253 associates Disease lymphoma. Variant rs143700307 associates Disease lymphoma. Variant rs772470710 associates Disease lymphoma. Variant rs11540652 associates Disease lymphoma. Disease lymphoma associates Gene HAVCR2. Variant rs121918459 associates Disease lymphoma. Disease lymphoma associates Gene IRF2BP2. Variant rs915103621 associates Disease lymphoma. Variant rs13255292 associates Disease lymphoma. Disease lymphoma associates Gene COL14A1. Disease lymphoma associates Gene KRT14. Disease lymphoma associates Gene CD81. Variant rs115957064 associates Disease lymphoma. Variant rs267601394 associates Disease lymphoma. Variant rs1574404027 associates Disease lymphoma. Variant rs267601395 associates Disease lymphoma. Variant rs1057519833 associates Disease lymphoma. Variant rs1592119138 associates Disease lymphoma. Disease lymphoma associates Gene RAD54B. Variant rs2621416 associates Disease lymphoma. Disease lymphoma associates Gene IL2RG. Variant rs387907272 associates Disease lymphoma. Variant rs1599367044 associates Disease lymphoma. Disease lymphoma associates Gene IGH. Disease lymphoma associates Gene MSH6. Disease lymphoma associates Gene KRT1. Disease lymphoma associates Gene FCHO1. Disease lymphoma associates Gene NTHL1. Variant rs4713570 associates Disease lymphoma. Variant rs6773854 associates Disease lymphoma. Disease lymphoma associates Gene KRT5. Disease lymphoma associates Gene TNFSF12. Disease lymphoma associates Gene MYD88. Disease lymphoma associates Gene KLHDC8B. Gene MIR363 associates Disease lymphoma. Disease lymphoma associates Gene SH2D1A. Disease lymphoma associates Gene PNP. Gene MIR383 associates Disease lymphoma. Gene MIR101-2 associates Disease lymphoma. Variant rs117972357 associates Disease lymphoma. Disease lymphoma associates Gene USB1. Disease lymphoma associates Gene CASP10. Disease lymphoma associates Gene MS4A1. Variant rs1592123162 associates Disease lymphoma. Disease lymphoma associates Gene TCF4. Variant rs4530903 associates Disease lymphoma. Gene MIR629 associates Disease lymphoma. Gene MIR101-1 associates Disease lymphoma. Disease lymphoma associates Gene CXCR4. Disease lymphoma associates Gene TET2. Disease lymphoma associates Gene CHEK2. Disease lymphoma associates Gene NSUN2. Disease lymphoma associates Gene FAS. Disease lymphoma associates Gene TNFRSF13B. Gene MIR122 associates Disease lymphoma. Gene MIR92A1 associates Disease lymphoma. Disease lymphoma associates Gene ITK. Disease lymphoma associates Gene RAG2. Disease lymphoma associates Gene BLM. Disease lymphoma associates Gene WAS. Variant rs7945144 associates Disease lymphoma. Gene MIR222 associates Disease lymphoma. Disease lymphoma associates Gene B2M. Variant rs2647045 associates Disease lymphoma. Gene MIR22 associates Disease lymphoma. Gene MIR92A2 associates Disease lymphoma. Disease lymphoma associates Gene KRAS. Disease hepatitis B associates Gene HLA-DQB2. Disease hepatitis B associates Gene HLA-DPB1. Variant rs9277535 associates Disease hepatitis B. Variant rs3130542 associates Disease hepatitis B. Gene MIR425 associates Disease hepatitis B. Variant rs7453920 associates Disease hepatitis B.. Disease hepatitis B associates Gene HLA-DPA1. Variant rs1419881 associates Disease hepatitis B. Variant rs4821116 associates Disease hepatitis B. Gene MIR520A associates Disease hepatitis B. Variant rs2856718 associates Disease hepatitis B. Variant rs11866328 associates Disease hepatitis B. Gene MIR323B associates Disease hepatitis B. Gene MIR22 associates Disease hepatitis B. Gene MIR520B associates Disease hepatitis B. Gene MIR101-2 associates Disease hepatitis B. Gene MIR122 associates Disease hepatitis B. Gene MIR125A associates Disease hepatitis B. Variant rs652888 associates Disease hepatitis B. Gene MIR583 associates Disease hepatitis B. Gene MIR101-1 associates Disease hepatitis B. Disease hepatitis B associates Gene TCF19. Gene MIR223 associates Disease hepatitis B. Gene MIR6126 associates Disease hepatitis B. Gene MIR31 associates Disease hepatitis B. Gene MIR1-2 associates Disease hepatitis B. Gene MIR141 associates Disease hepatitis B. Gene MIR501 associates Disease hepatitis B. Gene MIR4717 associates Disease hepatitis B. Gene MIR370 associates Disease hepatitis B. Gene MIR372 associates Disease hepatitis B. \\nQuestion: Out of the given list, which Gene is associated with lymphoma and hepatitis B. Given list is: HLA-DQB2, YLPM1, MTTP, HAAO, PTPN22'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990009.3528066}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/506db27dc3b630dbf1e3a77462a8dca4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/506db27dc3b630dbf1e3a77462a8dca4/output.pkl Binary files differnew file mode 100644 index 0000000..939fff2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/506db27dc3b630dbf1e3a77462a8dca4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5097067b002bca92f5649164b997a69b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5097067b002bca92f5649164b997a69b/metadata.json new file mode 100644 index 0000000..7530896 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5097067b002bca92f5649164b997a69b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5107312202453613, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with nephrotic syndrome and rheumatic heart disease. Given list is: GSDMB, KALRN, SNTB1, HLA-DQB1, CRTC1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990134.2203555}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5097067b002bca92f5649164b997a69b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5097067b002bca92f5649164b997a69b/output.pkl Binary files differnew file mode 100644 index 0000000..16be4da --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5097067b002bca92f5649164b997a69b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/50d2dfaf2da4933e903f95db2c6ea0cf/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/50d2dfaf2da4933e903f95db2c6ea0cf/metadata.json new file mode 100644 index 0000000..c39aab9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/50d2dfaf2da4933e903f95db2c6ea0cf/metadata.json @@ -0,0 +1 @@ +{"duration": 0.545391321182251, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and interstitial lung disease. Given list is: ADGRV1, TENM2, TERT, LRMDA, CCDC33'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047947.6411877}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/50d2dfaf2da4933e903f95db2c6ea0cf/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/50d2dfaf2da4933e903f95db2c6ea0cf/output.pkl Binary files differnew file mode 100644 index 0000000..2971821 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/50d2dfaf2da4933e903f95db2c6ea0cf/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/51bcc68dbcd624461c4c00f65739b6a0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/51bcc68dbcd624461c4c00f65739b6a0/metadata.json new file mode 100644 index 0000000..39267f1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/51bcc68dbcd624461c4c00f65739b6a0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8346662521362305, "input_args": {"instruction": "'Context: Disease atrophic gastritis associates Gene IFIH1. Disease atrophic gastritis associates Gene PSCA. Variant rs2294008 associates Disease atrophic gastritis.. Disease atrophic gastritis associates Gene CDH1. Disease atrophic gastritis associates Gene NFKB1. Disease atrophic gastritis associates Gene IL1B. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene IL1RN. Disease atrophic gastritis associates Gene KRAS. Disease atrophic gastritis associates Gene DEF6. Disease atrophic gastritis associates Gene LRBA. Disease atrophic gastritis associates Gene CTLA4. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene ARID1B. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene ABO. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer associates Gene JRK. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer presents Symptom Asthenia. Compound Anaprazole treats Disease duodenal ulcer. Disease duodenal ulcer presents Symptom Abdominal Pain. Compound Rabeprazole treats Disease duodenal ulcer. Compound CID 16685690 treats Disease duodenal ulcer. \\nQuestion: Out of the given list, which Gene is associated with atrophic gastritis and duodenal ulcer. Given list is: HOXD3, ATP2B1, PSCA, CDK8, CACNA1A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047884.3330975}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/51bcc68dbcd624461c4c00f65739b6a0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/51bcc68dbcd624461c4c00f65739b6a0/output.pkl Binary files differnew file mode 100644 index 0000000..33ad383 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/51bcc68dbcd624461c4c00f65739b6a0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5219427d6980386ec06644b49e69b6e6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5219427d6980386ec06644b49e69b6e6/metadata.json new file mode 100644 index 0000000..05ec94a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5219427d6980386ec06644b49e69b6e6/metadata.json @@ -0,0 +1 @@ +{"duration": 1.1208522319793701, "input_args": {"instruction": "'Context: Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene TNFRSF13B. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene C4B. Disease autoimmune disease associates Gene NLRP1. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene C4A. Disease autoimmune disease associates Gene IL10RA. Disease autoimmune disease associates Gene TNFRSF13C. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene FCGR2B. Disease autoimmune disease associates Gene NFKB2. Disease autoimmune disease associates Gene IL12B. Disease autoimmune disease associates Gene NFKB1. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene IL6R. Disease autoimmune disease associates Gene SLC26A4. Disease autoimmune disease associates Gene ITGAM. Disease autoimmune disease associates Gene TNFSF4. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene HLA-DRA. Disease autoimmune disease associates Gene IL1RN. Disease autoimmune disease associates Gene TNFAIP3. Disease autoimmune disease associates Gene SAA1. Disease autoimmune disease associates Gene CCL2. Disease autoimmune disease associates Gene IL13. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene IL1B. Disease autoimmune disease associates Gene XRCC6.. Disease autoimmune disease associates Gene CARD9. Disease autoimmune disease associates Gene CCL21. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene NFKBIL1. Disease autoimmune disease associates Gene DNASE1. Disease autoimmune disease associates Gene DNASE1L3. Disease autoimmune disease associates Gene IL1A. Disease autoimmune disease associates Gene TLR5. Disease autoimmune disease associates Gene MEFV. Disease autoimmune disease associates Gene NOS3. Disease autoimmune disease associates Gene SAA2. Disease autoimmune disease associates Gene IL4. Disease autoimmune disease associates Gene NLRP3. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis associates Gene RAC2. Disease ontology identifier of immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis is DOID:0112064. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of the skin. Disease immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis presents Symptom Abnormality of the skin. Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene TLR4. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene PTPN22. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene SH2D1A. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene TNFRSF13C. Disease vasculitis associates Gene WAS. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene SLC22A4. Disease vasculitis associates Gene IRF2BP2. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene PNP. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene IFNGR1. Disease vasculitis associates Gene C4A. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene SAA2. Disease ontology identifier of vasculitis is DOID:865. \\nQuestion: Out of the given list, which Variant is associated with autoimmune disease and anti-neutrophil antibody associated vasculitis. Given list is: rs2310752, rs7528604, rs6679677, rs34691223, rs2963222'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049120.9910996}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5219427d6980386ec06644b49e69b6e6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5219427d6980386ec06644b49e69b6e6/output.pkl Binary files differnew file mode 100644 index 0000000..18977e7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5219427d6980386ec06644b49e69b6e6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/54db3902d3ff6408a042d0028561a620/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/54db3902d3ff6408a042d0028561a620/metadata.json new file mode 100644 index 0000000..9f5087e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/54db3902d3ff6408a042d0028561a620/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5587363243103027, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with collagenous colitis and cutaneous lupus erythematosus. Given list is: rs2187668, rs975730, rs17398575, rs229527, rs1537377'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048926.3811781}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/54db3902d3ff6408a042d0028561a620/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/54db3902d3ff6408a042d0028561a620/output.pkl Binary files differnew file mode 100644 index 0000000..4faca64 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/54db3902d3ff6408a042d0028561a620/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/55448c4d2a6dce75808bb27f298d8974/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/55448c4d2a6dce75808bb27f298d8974/metadata.json new file mode 100644 index 0000000..431e808 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/55448c4d2a6dce75808bb27f298d8974/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7218277454376221, "input_args": {"instruction": "'Context: Variant rs539960851 associates Disease breast cancer. Gene SULT1C3 expressedin Disease breast cancer. Variant rs538280815 associates Disease breast cancer. Variant rs551041839 associates Disease breast cancer. Variant rs533802049 associates Disease breast cancer. Variant rs56091799 associates Disease breast cancer. Variant rs1565455938 associates Disease breast cancer. Variant rs996493095 associates Disease breast cancer. Variant rs534447939 associates Disease breast cancer. Variant rs878853519 associates Disease breast cancer. Variant rs33946261 associates Disease breast cancer. Variant rs63750027 associates Disease breast cancer. Variant rs878853535 associates Disease breast cancer. Variant rs942158624 associates Disease breast cancer. Variant rs151198586 associates Disease breast cancer. Variant rs878853297 associates Disease breast cancer. Variant rs555381912 associates Disease breast cancer. Variant rs533475838 associates Disease breast cancer. Variant rs55933907 associates Disease breast cancer. Variant rs144984153 associates Disease breast cancer. Variant rs531398630 associates Disease breast cancer. Variant rs63750998 associates Disease breast cancer. Variant rs33935154 associates Disease breast cancer. Variant rs886055599 associates Disease breast cancer. Variant rs63750617 associates Disease breast cancer. Variant rs431825318 associates Disease breast cancer. Variant rs149759218 associates Disease breast cancer. Variant rs55639415 associates Disease breast cancer. Variant rs878853559 associates Disease breast cancer. Variant rs886053214 associates Disease breast cancer. Variant rs63750685 associates Disease breast cancer. Variant rs886053212 associates Disease breast cancer. Variant rs59004709 associates Disease breast cancer. Variant rs555200296 associates Disease breast cancer. Variant rs45551636 associates Disease breast cancer. Variant rs33964119 associates Disease breast cancer. Variant rs1135401928 associates Disease breast cancer. Variant rs12721593 associates Disease breast cancer. Variant rs4986839 associates Disease breast cancer. Variant rs55939572 associates Disease breast cancer. Variant rs149328018 associates Disease breast cancer. Variant rs886053209 associates Disease breast cancer. Variant rs57936182 associates Disease breast cancer. Variant rs61754118 associates Disease breast cancer. Variant rs81002867 associates Disease breast cancer. Variant rs985465808 associates Disease breast cancer. Variant rs879253880 associates Disease breast cancer. Variant rs876659535 associates Disease breast cancer. Variant rs81002830 associates Disease breast cancer. Variant rs1799950 associates Disease breast cancer. Variant rs539613324 associates Disease breast cancer. Variant rs149182949 associates Disease breast cancer. Variant rs149769332 associates Disease breast cancer. Variant rs431825352 associates Disease breast cancer. Variant rs528541334 associates Disease breast cancer. Variant rs878853717 associates Disease breast cancer. Variant rs2078107930 associates Disease breast cancer. Variant rs200938360 associates Disease breast cancer. Variant rs81002827 associates Disease breast cancer. Variant rs878855154 associates Disease breast cancer. Variant rs1135401859 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Variant rs62625298 associates Disease breast cancer. Variant rs554040246 associates Disease breast cancer. Variant rs81002838 associates Disease breast cancer. Variant rs557444760 associates Disease breast cancer. Variant rs81002806 associates Disease breast cancer. Variant rs81002899 associates Disease breast cancer. Variant rs45624036 associates Disease breast cancer. Variant rs9282859 associates Disease breast cancer. Variant rs1135401868 associates Disease breast cancer. Variant rs1565532289 associates Disease breast cancer. Variant rs142334798 associates Disease breast cancer. Variant rs4987943 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Disease lung squamous cell carcinoma associates Gene BRCA2. Variant rs465498 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene CYP2A6.. Variant rs34192549 associates Disease lung squamous cell carcinoma. Variant rs1794304820 associates Disease lung squamous cell carcinoma. Variant rs1669420011 associates Disease lung squamous cell carcinoma. Variant rs142618987 associates Disease lung squamous cell carcinoma. Variant rs193920774 associates Disease lung squamous cell carcinoma. Variant rs36109883 associates Disease lung squamous cell carcinoma. Variant rs985033810 associates Disease lung squamous cell carcinoma. Variant rs1668958808 associates Disease lung squamous cell carcinoma. Variant rs866987936 associates Disease lung squamous cell carcinoma. Variant rs544282452 associates Disease lung squamous cell carcinoma. Variant rs149866169 associates Disease lung squamous cell carcinoma. Variant rs11844632 associates Disease lung squamous cell carcinoma. Variant rs942158624 associates Disease lung squamous cell carcinoma. Variant rs967461896 associates Disease lung squamous cell carcinoma. Variant rs148883465 associates Disease lung squamous cell carcinoma. Gene MIR101-2 associates Disease lung squamous cell carcinoma. Variant rs104894226 associates Disease lung squamous cell carcinoma. Variant rs1057520039 associates Disease lung squamous cell carcinoma. Variant rs1057519980 associates Disease lung squamous cell carcinoma. Variant rs876659802 associates Disease lung squamous cell carcinoma. Variant rs116310021 associates Disease lung squamous cell carcinoma. Variant rs1057519889 associates Disease lung squamous cell carcinoma. Variant rs876658468 associates Disease lung squamous cell carcinoma. Variant rs3117582 associates Disease lung squamous cell carcinoma. Variant rs1663742530 associates Disease lung squamous cell carcinoma. Variant rs34928889 associates Disease lung squamous cell carcinoma. Variant rs1057519984 associates Disease lung squamous cell carcinoma. Variant rs121913444 associates Disease lung squamous cell carcinoma. Variant rs1057519882 associates Disease lung squamous cell carcinoma. Variant rs1057519884 associates Disease lung squamous cell carcinoma. Variant rs1057519989 associates Disease lung squamous cell carcinoma. Variant rs483352697 associates Disease lung squamous cell carcinoma. Variant rs1057519982 associates Disease lung squamous cell carcinoma. Variant rs481519 associates Disease lung squamous cell carcinoma. Variant rs864622237 associates Disease lung squamous cell carcinoma. Variant rs56404467 associates Disease lung squamous cell carcinoma. Variant rs116822326 associates Disease lung squamous cell carcinoma. Variant rs876660821 associates Disease lung squamous cell carcinoma. Variant rs375874539 associates Disease lung squamous cell carcinoma. Variant rs121913465 associates Disease lung squamous cell carcinoma. Variant rs1057519986 associates Disease lung squamous cell carcinoma. Variant rs2075606 associates Disease lung squamous cell carcinoma. Variant rs3094604 associates Disease lung squamous cell carcinoma. Variant rs116461399 associates Disease lung squamous cell carcinoma. Variant rs1057519988 associates Disease lung squamous cell carcinoma. Variant rs2276550 associates Disease lung squamous cell carcinoma. Variant rs149949 associates Disease lung squamous cell carcinoma. Variant rs1057519895 associates Disease lung squamous cell carcinoma. Variant rs1057519789 associates Disease lung squamous cell carcinoma. Variant rs1057519987 associates Disease lung squamous cell carcinoma. Variant rs3795850 associates Disease lung squamous cell carcinoma. Variant rs116480994 associates Disease lung squamous cell carcinoma. Gene MIR19A associates Disease lung squamous cell carcinoma. Variant rs1057519879 associates Disease lung squamous cell carcinoma. Variant rs144594252 associates Disease lung squamous cell carcinoma. Variant rs1057519883 associates Disease lung squamous cell carcinoma. Variant rs11907546 associates Disease lung squamous cell carcinoma. Variant rs1057519978 associates Disease lung squamous cell carcinoma. Variant rs1057519921 associates Disease lung squamous cell carcinoma. Variant rs148861668 associates Disease lung squamous cell carcinoma. Variant rs1057519930 associates Disease lung squamous cell carcinoma. Variant rs1064793953 associates Disease lung squamous cell carcinoma. Variant rs1057519920 associates Disease lung squamous cell carcinoma. Variant rs1057519923 associates Disease lung squamous cell carcinoma. Variant rs1057519990 associates Disease lung squamous cell carcinoma. Variant rs116725014 associates Disease lung squamous cell carcinoma. Variant rs56113850 associates Disease lung squamous cell carcinoma. Variant rs1057519994 associates Disease lung squamous cell carcinoma. Variant rs1057519925 associates Disease lung squamous cell carcinoma. Variant rs1057519975 associates Disease lung squamous cell carcinoma. Variant rs56084662 associates Disease lung squamous cell carcinoma. Variant rs1057519997 associates Disease lung squamous cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and lung squamous cell carcinoma. Given list is: BRCA2, SULT1B1, SPRED2, CHST11, CCDC33'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048077.422556}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/55448c4d2a6dce75808bb27f298d8974/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/55448c4d2a6dce75808bb27f298d8974/output.pkl Binary files differnew file mode 100644 index 0000000..6634bf1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/55448c4d2a6dce75808bb27f298d8974/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/568602e81ab3b8c6dc54becb828617d5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/568602e81ab3b8c6dc54becb828617d5/metadata.json new file mode 100644 index 0000000..ed239ad --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/568602e81ab3b8c6dc54becb828617d5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5694534778594971, "input_args": {"instruction": "'Context: Gene MIR106B associates Disease cervix carcinoma. Gene MIR590 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene LTA. Gene MIR26B associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ADGRV1. Gene MIR218-1 associates Disease cervix carcinoma. Gene MIR543 associates Disease cervix carcinoma. Gene MIR16-2 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Gene MIR520H associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Gene MIR218-2 associates Disease cervix carcinoma. Gene MIR502 associates Disease cervix carcinoma. Gene MIR485 associates Disease cervix carcinoma. Gene MIR491 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-DQA1. Variant rs139337062 associates Disease cervix carcinoma. Gene MIR296 associates Disease cervix carcinoma. Gene MIR503 associates Disease cervix carcinoma. Gene MIR494 associates Disease cervix carcinoma. Gene MIR22 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-G. Disease cervix carcinoma associates Gene HLA-DQA2. Variant rs3132461 associates Disease cervix carcinoma. Gene MIR27B associates Disease cervix carcinoma. Gene MIR139 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Gene MIR196B associates Disease cervix carcinoma. Gene MIR497 associates Disease cervix carcinoma. Gene MIR29A associates Disease cervix carcinoma. Gene MIR381 associates Disease cervix carcinoma. Gene MIR20B associates Disease cervix carcinoma. Gene MIR34A associates Disease cervix carcinoma. Gene MIR4262 associates Disease cervix carcinoma. Gene MIR107 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Gene MIR331 associates Disease cervix carcinoma. Gene MIR338 associates Disease cervix carcinoma. Gene MIR29B2 associates Disease lung small cell carcinoma. Gene MIR29B1 associates Disease lung small cell carcinoma. Gene MIR125B2 associates Disease lung small cell carcinoma. Variant rs1057520003 associates Disease lung small cell carcinoma. Variant rs1057520001 associates Disease lung small cell carcinoma. Variant rs876660821 associates Disease lung small cell carcinoma. Variant rs1057520005 associates Disease lung small cell carcinoma. Variant rs1057520006 associates Disease lung small cell carcinoma. Gene MIR29A associates Disease lung small cell carcinoma. Variant rs876658468 associates Disease lung small cell carcinoma. Variant rs864622237 associates Disease lung small cell carcinoma. Variant rs121913295 associates Disease lung small cell carcinoma. Variant rs1057519985 associates Disease lung small cell carcinoma. Variant rs1057519989 associates Disease lung small cell carcinoma. Variant rs148924904 associates Disease lung small cell carcinoma. Variant rs587782329 associates Disease lung small cell carcinoma. Variant rs483352697 associates Disease lung small cell carcinoma. Variant rs530941076 associates Disease lung small cell carcinoma. Variant rs121909229 associates Disease lung small cell carcinoma. Variant rs1057519879 associates Disease lung small cell carcinoma. Variant rs121913274 associates Disease lung small cell carcinoma. Variant rs985033810 associates Disease lung small cell carcinoma. Variant rs1057519747 associates Disease lung small cell carcinoma. Variant rs116427960 associates Disease lung small cell carcinoma. Gene MIR324 associates Disease lung small cell carcinoma. Variant rs876660754 associates Disease lung small cell carcinoma. Variant rs1057519990 associates Disease lung small cell carcinoma. Gene MIR125B1 associates Disease lung small cell carcinoma. Variant rs1057519877 associates Disease lung small cell carcinoma. Variant rs193920774 associates Disease lung small cell carcinoma. Variant rs121913275 associates Disease lung small cell carcinoma. Variant rs121913297 associates Disease lung small cell carcinoma. Variant rs121913343 associates Disease lung small cell carcinoma. Variant rs886039484 associates Disease lung small cell carcinoma. Variant rs587782082 associates Disease lung small cell carcinoma. Variant rs1057519927 associates Disease lung small cell carcinoma. Variant rs1057519991 associates Disease lung small cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and lung small cell carcinoma. Given list is: TLR1, SYT14, VAV3, BTN2A1, ADGRV1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048703.200634}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/568602e81ab3b8c6dc54becb828617d5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/568602e81ab3b8c6dc54becb828617d5/output.pkl Binary files differnew file mode 100644 index 0000000..62f6e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/568602e81ab3b8c6dc54becb828617d5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56986470b0f845fd0b6cfcce1f4b2243/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56986470b0f845fd0b6cfcce1f4b2243/metadata.json new file mode 100644 index 0000000..815515b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56986470b0f845fd0b6cfcce1f4b2243/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6819961071014404, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and idiopathic pulmonary fibrosis. Given list is: PRKAG2, YLPM1, TERT, LOXL1, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050444.8664303}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56986470b0f845fd0b6cfcce1f4b2243/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56986470b0f845fd0b6cfcce1f4b2243/output.pkl Binary files differnew file mode 100644 index 0000000..e561eab --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56986470b0f845fd0b6cfcce1f4b2243/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56c53ad851bcc63f8c47944976d00d6a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56c53ad851bcc63f8c47944976d00d6a/metadata.json new file mode 100644 index 0000000..3f88bef --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56c53ad851bcc63f8c47944976d00d6a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6908237934112549, "input_args": {"instruction": "'Context: Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene NPRL3. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs2609259 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1102586 associates Disease idiopathic pulmonary fibrosis. Gene MIR142 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene KNL1. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Gene MIR155 associates Disease idiopathic pulmonary fibrosis. Gene MIR29A associates Disease idiopathic pulmonary fibrosis. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene BMPR1A. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene POLR2A. Disease central nervous system cancer associates Gene GPR161. Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene FLI1. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TRAF7. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene PRDM16. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene RPS20. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene PSEN1. Disease central nervous system cancer associates Gene LRP5. Disease central nervous system cancer associates Gene CDKN1B. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene PDE6D. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene LZTR1. Variant rs4977756 associates Disease central nervous system cancer. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SIX3. Disease central nervous system cancer associates Gene TP53. Variant rs4295627 associates Disease central nervous system cancer. Variant rs1920116 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene KIF1B. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene ALX1. Variant rs2157719 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene FGF8. Variant rs75061358 associates Disease central nervous system cancer. Variant rs1412829 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RB1. Disease central nervous system cancer associates Gene MYO1H. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene CDKN2B. Disease central nervous system cancer associates Gene EIF3F. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene PDGFRB. Disease central nervous system cancer associates Gene SMARCB1. Disease central nervous system cancer associates Gene GLI3. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene DICER1. Disease central nervous system cancer associates Gene ZSWIM6. Disease central nervous system cancer associates Gene CPLANE1. Disease central nervous system cancer associates Gene VPS16. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene SMARCA4. Disease central nervous system cancer associates Gene KIF7. Disease central nervous system cancer associates Gene TUBB. Variant rs35850753 associates Disease central nervous system cancer. Variant rs12230172 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PTCH2. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RTEL1. Disease central nervous system cancer associates Gene LMNA. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and central nervous system cancer. Given list is: LOXL1, TERT, KALRN, RP1, IL6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047675.088614}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56c53ad851bcc63f8c47944976d00d6a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56c53ad851bcc63f8c47944976d00d6a/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56c53ad851bcc63f8c47944976d00d6a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56e608fb611622d8894b7e5a107a1545/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56e608fb611622d8894b7e5a107a1545/metadata.json new file mode 100644 index 0000000..be9c650 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56e608fb611622d8894b7e5a107a1545/metadata.json @@ -0,0 +1 @@ +{"duration": 0.47046804428100586, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQB1. Disease autoimmune hepatitis associates Gene HLA-DQA1. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene IL6ST. Disease immunoglobulin alpha deficiency associates Gene JAK3. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Disease immunoglobulin alpha deficiency associates Gene ADA. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Disease immunoglobulin alpha deficiency associates Gene PLCG2. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene ATP6AP1. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease immunoglobulin alpha deficiency associates Gene IFIH1. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene CTLA4. Disease immunoglobulin alpha deficiency associates Gene AHI1. Variant rs11299600 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene ZNF341. Disease immunoglobulin alpha deficiency associates Gene TNFRSF11A. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene RAG2. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Disease immunoglobulin alpha deficiency associates Gene LCK. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and immunoglobulin alpha deficiency. Given list is: HLA-DQA1, HLA-DQB1, UCK2, PLA2R1, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989644.6314075}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56e608fb611622d8894b7e5a107a1545/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56e608fb611622d8894b7e5a107a1545/output.pkl Binary files differnew file mode 100644 index 0000000..a04146e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56e608fb611622d8894b7e5a107a1545/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56f68e4519bb694c97581fa32b9478e2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56f68e4519bb694c97581fa32b9478e2/metadata.json new file mode 100644 index 0000000..6dea932 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56f68e4519bb694c97581fa32b9478e2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5628163814544678, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and psoriasis. Given list is: MYH7, ADH1B, MYH7, HLA-B, PKNOX2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048249.9235432}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56f68e4519bb694c97581fa32b9478e2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56f68e4519bb694c97581fa32b9478e2/output.pkl Binary files differnew file mode 100644 index 0000000..3c654fc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/56f68e4519bb694c97581fa32b9478e2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5737aff7a05ddbf962c636d68da916db/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5737aff7a05ddbf962c636d68da916db/metadata.json new file mode 100644 index 0000000..cb47d54 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5737aff7a05ddbf962c636d68da916db/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7147772312164307, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and skin sensitivity to sun. Given list is: rs254020, rs4625, rs6059655, rs11738191, rs2963222'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049049.8803475}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5737aff7a05ddbf962c636d68da916db/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5737aff7a05ddbf962c636d68da916db/output.pkl Binary files differnew file mode 100644 index 0000000..b32ca8e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5737aff7a05ddbf962c636d68da916db/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/576bcc768dedcaa1a70e09b552d71365/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/576bcc768dedcaa1a70e09b552d71365/metadata.json new file mode 100644 index 0000000..9d2ea56 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/576bcc768dedcaa1a70e09b552d71365/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46829938888549805, "input_args": {"instruction": "'Context: Disease immunoglobulin alpha deficiency resembles Disease membranoproliferative glomerulonephritis. Variant rs1599507415 associates Disease membranoproliferative glomerulonephritis.. Disease membranoproliferative glomerulonephritis associates Gene DNASE2. Disease membranoproliferative glomerulonephritis associates Gene C1QB. Disease membranoproliferative glomerulonephritis associates Gene C1QA. Disease membranoproliferative glomerulonephritis associates Gene DGKE. Disease membranoproliferative glomerulonephritis associates Gene LMNB2. Disease membranoproliferative glomerulonephritis associates Gene C1QC. Disease selective IgA deficiency disease resembles Disease membranoproliferative glomerulonephritis. Disease membranoproliferative glomerulonephritis associates Gene PGM3. Disease membranoproliferative glomerulonephritis associates Gene ZNFX1. Disease membranoproliferative glomerulonephritis associates Gene CFHR2. Disease membranoproliferative glomerulonephritis associates Gene SLC37A4. Disease membranoproliferative glomerulonephritis associates Gene CFHR3. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency resembles Disease membranous glomerulonephritis. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs1265159 associates Disease membranous glomerulonephritis. Variant rs3134945 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Variant rs2187668 associates Disease membranous glomerulonephritis. Variant rs7750641 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs9272729 associates Disease membranous glomerulonephritis. Variant rs9405192 associates Disease membranous glomerulonephritis. Variant rs17831251 associates Disease membranous glomerulonephritis. Variant rs3130618 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene EGFL8. Variant rs389884 associates Disease membranous glomerulonephritis. Variant rs3130564 associates Disease membranous glomerulonephritis. Variant rs4664308 associates Disease membranous glomerulonephritis. Variant rs230540 associates Disease membranous glomerulonephritis.. Variant rs9314614; rs2738058; rs12716641 associates Disease IgA glomerulonephritis. Variant rs9275596 associates Disease IgA glomerulonephritis. Variant rs6677604 associates Disease IgA glomerulonephritis. Variant rs548169927 associates Disease IgA glomerulonephritis. Variant rs9266216 associates Disease IgA glomerulonephritis. Variant rs9271082 associates Disease IgA glomerulonephritis. Variant rs6942325 associates Disease IgA glomerulonephritis. Variant rs660895 associates Disease IgA glomerulonephritis. Variant rs519662 associates Disease IgA glomerulonephritis. Variant rs12716641 associates Disease IgA glomerulonephritis. Variant rs56254331 associates Disease IgA glomerulonephritis. Variant rs35924503 associates Disease IgA glomerulonephritis. Variant rs3129721 associates Disease IgA glomerulonephritis. Variant rs11574637 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene TNFSF12-TNFSF13. Variant rs191495917 associates Disease IgA glomerulonephritis. Variant rs1606888 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene MPDU1. Variant rs7763262 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene TGFB1. Variant rs9275224 associates Disease IgA glomerulonephritis. Variant rs10086568 associates Disease IgA glomerulonephritis. Variant rs2412971 associates Disease IgA glomerulonephritis. Variant rs2295119 associates Disease IgA glomerulonephritis. Variant rs2071543 associates Disease IgA glomerulonephritis. Variant rs17019602 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene MMP1. Variant rs2856717 associates Disease IgA glomerulonephritis. Variant rs9314614 associates Disease IgA glomerulonephritis. Variant rs1794275 associates Disease IgA glomerulonephritis. Disease ontology identifier of selective immunoglobulin deficiency disease is DOID:6025. Disease selective IgA deficiency disease associates Gene HLA-DQB1. Disease selective IgA deficiency disease associates Gene HLA-DQA1. Disease membranous glomerulonephritis resembles Disease selective IgA deficiency disease.. Disease selective IgA deficiency disease associates Gene PMM2. Disease selective IgA deficiency disease associates Gene IL2RA. Disease selective IgA deficiency disease associates Gene IL2RG. Disease selective IgA deficiency disease associates Gene IL6ST. Disease selective IgA deficiency disease associates Gene MOGS. Disease selective IgA deficiency disease associates Gene NFE2L2. Disease selective IgA deficiency disease associates Gene ATP6AP1. Disease selective IgA deficiency disease associates Gene TNFRSF13B. Disease selective IgA deficiency disease associates Gene IRF2BP2. Disease selective IgA deficiency disease associates Gene TCN2. Disease selective IgA deficiency disease associates Gene RAG2. Disease selective IgA deficiency disease associates Gene ZBTB24. Disease selective IgA deficiency disease resembles Disease membranoproliferative glomerulonephritis. Disease selective IgA deficiency disease associates Gene RAG1. Disease selective IgA deficiency disease associates Gene JAK3. Disease selective IgA deficiency disease associates Gene BTK. Disease selective IgA deficiency disease associates Gene CD247. Disease selective IgA deficiency disease associates Gene TNFRSF11A. Disease selective IgA deficiency disease associates Gene CD3D. Disease selective IgA deficiency disease associates Gene CSNK2A1. Disease selective IgA deficiency disease associates Gene ATM. \\nQuestion: Out of the given list, which Gene is associated with membranous glomerulonephritis and immunoglobulin alpha deficiency. Given list is: HLA-DQA1, ADH1B, TM6SF2, TERT, IL2RA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988425.969392}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/576bcc768dedcaa1a70e09b552d71365/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/576bcc768dedcaa1a70e09b552d71365/output.pkl Binary files differnew file mode 100644 index 0000000..ee95d1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/576bcc768dedcaa1a70e09b552d71365/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57a18246fa28e048599c164082c32069/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57a18246fa28e048599c164082c32069/metadata.json new file mode 100644 index 0000000..f42c431 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57a18246fa28e048599c164082c32069/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6023163795471191, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with rheumatic heart disease and nephrotic syndrome. Given list is: CACNA1D, TFAP2B, STAT4, HLA-DQB1, PTK2B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047878.3700645}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57a18246fa28e048599c164082c32069/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57a18246fa28e048599c164082c32069/output.pkl Binary files differnew file mode 100644 index 0000000..394f7bc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57a18246fa28e048599c164082c32069/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57b208aa150274a3ca7117b80b8a3536/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57b208aa150274a3ca7117b80b8a3536/metadata.json new file mode 100644 index 0000000..e4ae858 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57b208aa150274a3ca7117b80b8a3536/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4178276062011719, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and myeloproliferative neoplasm. Given list is: ZFPM2, IL23R, TERT, THADA, IL23R'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988545.4132173}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57b208aa150274a3ca7117b80b8a3536/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57b208aa150274a3ca7117b80b8a3536/output.pkl Binary files differnew file mode 100644 index 0000000..f1621ab --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/57b208aa150274a3ca7117b80b8a3536/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5812cc9b8a78717fe269be37f565697a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5812cc9b8a78717fe269be37f565697a/metadata.json new file mode 100644 index 0000000..f2ac408 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5812cc9b8a78717fe269be37f565697a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6338152885437012, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with differentiated thyroid gland carcinoma and thyroid gland papillary carcinoma. Given list is: ITPA, CHEK2, CRTC1, PLG, VAV3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047715.2275624}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5812cc9b8a78717fe269be37f565697a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5812cc9b8a78717fe269be37f565697a/output.pkl Binary files differnew file mode 100644 index 0000000..db0a984 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5812cc9b8a78717fe269be37f565697a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58189ce6729e052bbac33575739c5c4d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58189ce6729e052bbac33575739c5c4d/metadata.json new file mode 100644 index 0000000..c1321ff --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58189ce6729e052bbac33575739c5c4d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7435476779937744, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with non-alcoholic fatty liver disease and liver cirrhosis. Given list is: IL23R, RP1, PSCA, PNPLA3, PLG'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047685.9967675}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58189ce6729e052bbac33575739c5c4d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58189ce6729e052bbac33575739c5c4d/output.pkl Binary files differnew file mode 100644 index 0000000..8f3ce28 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58189ce6729e052bbac33575739c5c4d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58557d55bcef88270a78407d11b522c7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58557d55bcef88270a78407d11b522c7/metadata.json new file mode 100644 index 0000000..872f1aa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58557d55bcef88270a78407d11b522c7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6053502559661865, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with esophagus adenocarcinoma and Barrett's esophagus. Given list is: TERT, HLA-DQB2, EPDR1, PNPLA3, CRTC1\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048689.296471}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58557d55bcef88270a78407d11b522c7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58557d55bcef88270a78407d11b522c7/output.pkl Binary files differnew file mode 100644 index 0000000..83e98aa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58557d55bcef88270a78407d11b522c7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58e39b7da9a062001768fa5c184b02f0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58e39b7da9a062001768fa5c184b02f0/metadata.json new file mode 100644 index 0000000..eb22568 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58e39b7da9a062001768fa5c184b02f0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6001410484313965, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with large artery stroke and aortic stenosis. Given list is: rs10455872, rs35781323, rs4615152, rs761934676, rs11965538'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049123.3430338}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58e39b7da9a062001768fa5c184b02f0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58e39b7da9a062001768fa5c184b02f0/output.pkl Binary files differnew file mode 100644 index 0000000..baf3b1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/58e39b7da9a062001768fa5c184b02f0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5926e7b66c2887aa6dfd1e0836fbb808/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5926e7b66c2887aa6dfd1e0836fbb808/metadata.json new file mode 100644 index 0000000..66066b8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5926e7b66c2887aa6dfd1e0836fbb808/metadata.json @@ -0,0 +1 @@ +{"duration": 0.38938188552856445, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriasis and diffuse large B-cell lymphoma. Given list is: PTPRD, XBP1, BRCA2, DMRT1, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988421.2417233}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5926e7b66c2887aa6dfd1e0836fbb808/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5926e7b66c2887aa6dfd1e0836fbb808/output.pkl Binary files differnew file mode 100644 index 0000000..082c4bb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5926e7b66c2887aa6dfd1e0836fbb808/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/59780513b6bfda2285c47c62cb83d11d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/59780513b6bfda2285c47c62cb83d11d/metadata.json new file mode 100644 index 0000000..a70ccb2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/59780513b6bfda2285c47c62cb83d11d/metadata.json @@ -0,0 +1 @@ +{"duration": 10.050347805023193, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Takayasu's arteritis and allergic rhinitis. Given list is: HLA-DQB2, CRTC1, FAM13A, TNRC6B, HLA-B\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989758.7712336}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/59780513b6bfda2285c47c62cb83d11d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/59780513b6bfda2285c47c62cb83d11d/output.pkl Binary files differnew file mode 100644 index 0000000..77bf696 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/59780513b6bfda2285c47c62cb83d11d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a43c1dbe56b370a21f053d8a2b3eaf2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a43c1dbe56b370a21f053d8a2b3eaf2/metadata.json new file mode 100644 index 0000000..3b1aaf9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a43c1dbe56b370a21f053d8a2b3eaf2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48770713806152344, "input_args": {"instruction": "'Context: Variant rs3132468 associates Disease dengue hemorrhagic fever.. Variant rs3765524 associates Disease dengue hemorrhagic fever. Disease dengue hemorrhagic fever associates Gene PLCE1. Disease dengue hemorrhagic fever presents Symptom Fever of Unknown Origin. Disease dengue hemorrhagic fever associates Gene MICB. Disease dengue hemorrhagic fever presents Symptom Headache. Disease dengue hemorrhagic fever presents Symptom Fever. Disease ontology identifier of dengue hemorrhagic fever is DOID:12206. Organism Dengue virus causes Disease dengue hemorrhagic fever. Variant rs11661542 associates Disease intracranial aneurysm. Variant rs11646044 associates Disease intracranial aneurysm. Variant rs595244 associates Disease intracranial aneurysm. Variant rs564680092 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene CFDP1. Variant rs148502998 associates Disease intracranial aneurysm. Variant rs62516550 associates Disease intracranial aneurysm. Variant rs6475606 associates Disease intracranial aneurysm. Variant rs5981626 associates Disease intracranial aneurysm. Variant rs58721068 associates Disease intracranial aneurysm. Variant rs55965782 associates Disease intracranial aneurysm. Variant rs4814863 associates Disease intracranial aneurysm. Variant rs6842241 associates Disease intracranial aneurysm. Variant rs2280543 associates Disease intracranial aneurysm. Variant rs6841581 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene ANGPTL6. Variant rs6997005 associates Disease intracranial aneurysm. Variant rs12226402 associates Disease intracranial aneurysm. Variant rs9298506 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene FGD6. Variant rs10958409 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene ATP2B1. Variant rs39713 associates Disease intracranial aneurysm. Variant rs4705938 associates Disease intracranial aneurysm. Variant rs4977574 associates Disease intracranial aneurysm. Variant rs1554600 associates Disease intracranial aneurysm. Variant rs2681472 associates Disease intracranial aneurysm. Variant rs11153071 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene FHL5. Variant rs855917 associates Disease intracranial aneurysm. Variant rs10733376 associates Disease intracranial aneurysm. Gene MIR24-1 associates Disease intracranial aneurysm. Variant rs10230207 associates Disease intracranial aneurysm. Variant rs12413409 associates Disease intracranial aneurysm. Variant rs919433 associates Disease intracranial aneurysm. Variant rs3742321 associates Disease intracranial aneurysm. Variant rs10519203 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene FBN1. Variant rs8034191 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene COL1A1. Disease intracranial aneurysm associates Gene PDE11A. Variant rs1333040 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene RP1. Variant rs11044991 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene COL5A2. Gene MIR455 associates Disease intracranial aneurysm. Variant rs12225799 associates Disease intracranial aneurysm. Gene MIR146A associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene LOX. Variant rs11105352 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene NT5C2. Variant rs11105337 associates Disease intracranial aneurysm. Disease intracranial aneurysm associates Gene COL5A1. Disease intracranial aneurysm associates Gene COL4A1. Disease intracranial aneurysm associates Gene NF1. Variant rs7184525 associates Disease intracranial aneurysm. \\nQuestion: Out of the given list, which Gene is associated with dengue hemorrhagic fever and intracranial aneurysm. Given list is: RP1, TLR1, UCK2, GNE, FADS1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989944.4473255}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a43c1dbe56b370a21f053d8a2b3eaf2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a43c1dbe56b370a21f053d8a2b3eaf2/output.pkl Binary files differnew file mode 100644 index 0000000..31a9418 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a43c1dbe56b370a21f053d8a2b3eaf2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a84f4429977eb31bb9a1e218b28685d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a84f4429977eb31bb9a1e218b28685d/metadata.json new file mode 100644 index 0000000..e4a1f05 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a84f4429977eb31bb9a1e218b28685d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6409709453582764, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with liver cirrhosis and head and neck cancer. Given list is: CACNA2D1, HLA-DQA1, ADGRV1, YLPM1, STN1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989708.0254214}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a84f4429977eb31bb9a1e218b28685d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a84f4429977eb31bb9a1e218b28685d/output.pkl Binary files differnew file mode 100644 index 0000000..5541252 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5a84f4429977eb31bb9a1e218b28685d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5ac8bd105a1bd8012efb99fa75b82753/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5ac8bd105a1bd8012efb99fa75b82753/metadata.json new file mode 100644 index 0000000..4cc5282 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5ac8bd105a1bd8012efb99fa75b82753/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5738184452056885, "input_args": {"instruction": "'Context: Disease Kuhnt-Junius degeneration associates Gene SLC44A4. Disease Kuhnt-Junius degeneration associates Gene CFB. Disease Kuhnt-Junius degeneration associates Gene CFH. Variant rs35292876 associates Disease Kuhnt-Junius degeneration. Variant rs61818925 associates Disease Kuhnt-Junius degeneration. Variant rs147859257 associates Disease Kuhnt-Junius degeneration. Variant rs201459901 associates Disease Kuhnt-Junius degeneration. Variant rs2740488 associates Disease Kuhnt-Junius degeneration. Variant rs67538026 associates Disease Kuhnt-Junius degeneration. Disease Kuhnt-Junius degeneration associates Gene C2. Variant rs141853578 associates Disease Kuhnt-Junius degeneration. Variant rs10490924 associates Disease Kuhnt-Junius degeneration. Variant rs142450006 associates Disease Kuhnt-Junius degeneration. Variant rs8135665 associates Disease Kuhnt-Junius degeneration. Variant rs5754227 associates Disease Kuhnt-Junius degeneration. Variant rs61941274 associates Disease Kuhnt-Junius degeneration. Variant rs12019136 associates Disease Kuhnt-Junius degeneration. Variant rs61985136 associates Disease Kuhnt-Junius degeneration. Variant rs55975637 associates Disease Kuhnt-Junius degeneration. Disease kidney disease associates Gene PRKACB. Disease kidney disease associates Gene CHEK2. Disease kidney disease associates Gene XRCC4. Disease kidney disease associates Gene PKDCC. Disease kidney disease associates Gene KCTD1. Disease kidney disease associates Gene PRKCD. Disease kidney disease associates Gene PRKCZ. Disease kidney disease associates Gene CACNA1D. Disease kidney disease associates Gene ZNF699. Disease kidney disease associates Gene ZNF592. Disease kidney disease associates Gene CACNA1S. Disease kidney disease associates Gene DNAJB11. Disease kidney disease associates Gene PROK2. Disease kidney disease associates Gene CTU2. Disease kidney disease associates Gene CTH. Disease kidney disease associates Gene PROKR2. Disease kidney disease associates Gene DNAJC30. Disease kidney disease associates Gene CTNS. Disease kidney disease associates Gene PALB2. Disease kidney disease associates Gene MCPH1. Disease kidney disease associates Gene FRAS1. Disease kidney disease associates Gene CTNNB1. Disease kidney disease associates Gene PRKCSH. Disease kidney disease associates Gene DNAJC21. Variant rs9275596 associates Disease kidney disease. Disease kidney disease associates Gene RAD54B. Disease kidney disease associates Gene MYO5B. Disease kidney disease associates Gene PRKAG2. Disease kidney disease associates Gene DKC1. Disease kidney disease associates Gene TRPV6. Disease kidney disease associates Gene BRCA1. Disease kidney disease associates Gene COL3A1. Disease kidney disease associates Gene PRKACA. Disease kidney disease associates Gene KANK2. Variant rs6677604 associates Disease kidney disease. Disease kidney disease associates Gene BRCA2. Disease kidney disease associates Gene KCNJ11. Disease kidney disease associates Gene CFB. Disease kidney disease associates Gene CREBBP. Disease kidney disease associates Gene MMP1. Disease kidney disease associates Gene ETFB. Disease kidney disease associates Gene FKTN. Disease kidney disease associates Gene TKT. Disease kidney disease associates Gene KRT17. Disease kidney disease associates Gene DPH1. Disease kidney disease associates Gene APRT. Disease kidney disease associates Gene KL. Disease kidney disease associates Gene DISP1. Disease kidney disease associates Gene ADNP. Disease kidney disease associates Gene NEK8. Disease kidney disease associates Gene FBN1. Disease kidney disease associates Gene ATP6V1B2. Disease kidney disease associates Gene NEK1. Disease kidney disease associates Gene CLCNKB. Disease kidney disease associates Gene WDPCP. Disease kidney disease associates Gene COL4A1. Disease kidney disease associates Gene KIAA0586. Disease kidney disease associates Gene KLRC4. Disease kidney disease associates Gene COL4A6. Disease kidney disease associates Gene KIAA0753. Disease kidney disease associates Gene NDUFB10. Disease kidney disease associates Gene KAT6A. Disease kidney disease associates Gene PTCH1. Disease kidney disease associates Gene NDUFB8. Disease kidney disease associates Gene PIK3CA. Disease kidney disease associates Gene ATP6V0A4. Disease kidney disease associates Gene KEAP1. Disease kidney disease associates Gene KCNJ10. Disease kidney disease associates Gene KYNU. Disease kidney disease associates Gene COL4A4. Disease kidney disease associates Gene CFH. Disease kidney disease associates Gene ETFDH. Disease kidney disease associates Gene NDUFB9. Disease kidney disease associates Gene CEP57. Disease kidney disease associates Gene KIF1B. \\nQuestion: Out of the given list, which Gene is associated with Kuhnt-Junius degeneration and kidney disease. Given list is: PRKACB, MUC5B, TERT, CFH, CACNA2D1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990007.7894182}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5ac8bd105a1bd8012efb99fa75b82753/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5ac8bd105a1bd8012efb99fa75b82753/output.pkl Binary files differnew file mode 100644 index 0000000..8d7d05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5ac8bd105a1bd8012efb99fa75b82753/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5b6c48037e4d38674bfeddcc30cde739/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5b6c48037e4d38674bfeddcc30cde739/metadata.json new file mode 100644 index 0000000..db14b0c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5b6c48037e4d38674bfeddcc30cde739/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5871987342834473, "input_args": {"instruction": "'Context: Disease lung carcinoma associates Gene TERT. Variant rs116551911 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Gene MIR107 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs28412066 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs116295105 associates Disease lung carcinoma. Variant rs1805076 associates Disease lung carcinoma. Variant rs185038874 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Disease lung carcinoma associates Gene MSH5. Variant rs397517085 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Gene MIR15B associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs121913530 associates Disease lung carcinoma. Variant rs121909071 associates Disease lung carcinoma. Variant rs180177042 associates Disease lung carcinoma. Variant rs1800566 associates Disease lung carcinoma. Gene MIR616 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Disease lung carcinoma associates Gene MPZL2. Variant rs13217620 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TRIM26. Variant rs121913351 associates Disease lung carcinoma. Variant rs28408315 associates Disease lung carcinoma. Variant rs121913355 associates Disease lung carcinoma. Gene MIR302B associates Disease lung carcinoma. Variant rs113488022 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs35952432 associates Disease lung carcinoma. Variant rs16832404 x rs2562796 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. Disease lung carcinoma associates Gene POT1. Variant rs952307505 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs17879961 associates Disease lung carcinoma. Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene ATM. Disease myeloproliferative neoplasm associates Gene THPO.. Variant rs121913520 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene MECOM. Variant rs121913504 associates Disease myeloproliferative neoplasm. Gene MIR15B associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Gene MIR126 associates Disease myeloproliferative neoplasm. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and myeloproliferative neoplasm. Given list is: TERT, MST1, OPTN, TNRC18, PSCA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048803.0211809}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5b6c48037e4d38674bfeddcc30cde739/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5b6c48037e4d38674bfeddcc30cde739/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5b6c48037e4d38674bfeddcc30cde739/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5c71b032d1117eb4626925190de9f689/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5c71b032d1117eb4626925190de9f689/metadata.json new file mode 100644 index 0000000..f093028 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5c71b032d1117eb4626925190de9f689/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4817037582397461, "input_args": {"instruction": "'Context: Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene HLA-C. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL12B. Variant rs1610601 associates Disease psoriatic arthritis. Variant rs458017 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Variant rs149997688 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MRPS18B. Variant rs13017599 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene SLC22A5. Variant rs13191343 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TRAF3IP2. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Arthralgia.. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Skin Manifestations. \\nQuestion: Out of the given list, which Gene is associated with psoriatic arthritis and diffuse large B-cell lymphoma. Given list is: HLA-DQB1, ABCG2, PTK2B, HLA-B, RP1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048753.813858}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5c71b032d1117eb4626925190de9f689/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5c71b032d1117eb4626925190de9f689/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5c71b032d1117eb4626925190de9f689/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5e0b9b37e24b5df0d9d73104ae3c0bcc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5e0b9b37e24b5df0d9d73104ae3c0bcc/metadata.json new file mode 100644 index 0000000..6e83aae --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5e0b9b37e24b5df0d9d73104ae3c0bcc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5992546081542969, "input_args": {"instruction": "'Context: Disease estrogen-receptor negative breast cancer isa Disease breast cancer. Variant rs145551486 associates Disease breast cancer. Variant rs145598272 associates Disease breast cancer. Variant rs145009419 associates Disease breast cancer. Variant rs145068586 associates Disease breast cancer. Variant rs4987943 associates Disease breast cancer. Variant rs539960851 associates Disease breast cancer. Variant rs539613324 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs145400590 associates Disease breast cancer. Variant rs149331537 associates Disease breast cancer. Variant rs56009889 associates Disease breast cancer. Variant rs149182949 associates Disease breast cancer. Variant rs149769332 associates Disease breast cancer. Variant rs397507213 associates Disease breast cancer. Variant rs149328018 associates Disease breast cancer. Variant rs145847315 associates Disease breast cancer. Variant rs144984153 associates Disease breast cancer. Variant rs145855459 associates Disease breast cancer. Variant rs145936354 associates Disease breast cancer. Variant rs397507233 associates Disease breast cancer. Variant rs4986854 associates Disease breast cancer. Variant rs551041839 associates Disease breast cancer. Variant rs149636614 associates Disease breast cancer. Variant rs45561331 associates Disease breast cancer. Variant rs142334798 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Variant rs4988352 associates Disease breast cancer. Variant rs397507295 associates Disease breast cancer. Variant rs117175949 associates Disease breast cancer. Variant rs149827260 associates Disease breast cancer. Variant rs199739859 associates Disease breast cancer. Variant rs553975112 associates Disease breast cancer. Variant rs34969857 associates Disease breast cancer. Variant rs45551636 associates Disease breast cancer. Variant rs199954262 associates Disease breast cancer. Variant rs145333518 associates Disease breast cancer. Variant rs55939572 associates Disease breast cancer. Disease estrogen-receptor positive breast cancer isa Disease breast cancer. Variant rs33964119 associates Disease breast cancer. Variant rs4988346 associates Disease breast cancer. Variant rs4988125 associates Disease breast cancer. Variant rs372966951 associates Disease breast cancer. Variant rs4986860 associates Disease breast cancer. Variant rs145473716 associates Disease breast cancer. Variant rs397507372 associates Disease breast cancer. Variant rs377149139 associates Disease breast cancer. Variant rs371431745 associates Disease breast cancer. Variant rs397508983 associates Disease breast cancer. Variant rs1601985311 associates Disease breast cancer. Variant rs397507211 associates Disease breast cancer. Variant rs151327241 associates Disease breast cancer. Variant rs41286298 associates Disease breast cancer. Variant rs397507396 associates Disease breast cancer. Variant rs397507196 associates Disease breast cancer. Variant rs151198586 associates Disease breast cancer. Variant rs199543313 associates Disease breast cancer. Variant rs56354945 associates Disease breast cancer. Variant rs942158624 associates Disease breast cancer. Variant rs4986845 associates Disease breast cancer. Variant rs397507417 associates Disease breast cancer. Variant rs397507419 associates Disease breast cancer. Variant rs431825318 associates Disease breast cancer. Variant rs397507241 associates Disease breast cancer. Variant rs431825352 associates Disease breast cancer. Variant rs397507239 associates Disease breast cancer. Variant rs1555286298 associates Disease breast cancer. Variant rs33935154 associates Disease breast cancer. Variant rs145453814 associates Disease breast cancer. Variant rs878853519 associates Disease breast cancer. Variant rs968150359 associates Disease breast cancer. Variant rs143340522 associates Disease breast cancer. Variant rs145625991 associates Disease breast cancer. Variant rs55969723 associates Disease breast cancer. Variant rs56121817 associates Disease breast cancer. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene BDNF. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TRAF7. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene RTEL1. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Variant rs2157719 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TERT. Variant rs59060240 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene FGF8. Variant rs55705857 associates Disease central nervous system cancer. Variant rs1801591 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene EGFR. Variant rs891835 associates Disease central nervous system cancer. Variant rs2853676 associates Disease central nervous system cancer. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PIK3CA. Variant rs1920116 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene RUNX1. Disease central nervous system cancer associates Gene EDN3. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene MMP23B. Variant rs35850753 associates Disease central nervous system cancer. Variant rs75061358 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FAT4. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene ELP1. Disease central nervous system cancer associates Gene FLI1. Disease central nervous system cancer associates Gene FH. Disease central nervous system cancer associates Gene YY1. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene TUBB. Disease central nervous system cancer associates Gene SMARCB1. Variant rs111696067 associates Disease central nervous system cancer. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GDNF. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene EIF3F. Disease central nervous system cancer associates Gene EWSR1. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EPHB2. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene IFNG. Variant rs12230172 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene SMARCA4. Variant rs4809324 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene PSEN1. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene ADAMTS3. Disease central nervous system cancer associates Gene RET. Variant rs1412829 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene POT1. Disease central nervous system cancer associates Gene GABRD. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene VCP. Disease central nervous system cancer associates Gene CPLANE1. Disease central nervous system cancer associates Gene RELA. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene MEN1. Disease central nervous system cancer associates Gene CDKN1B. Disease central nervous system cancer associates Gene SMARCE1. Disease central nervous system cancer associates Gene CHEK2. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and central nervous system cancer. Given list is: FER, CACNA1D, COL22A1, TNFSF15, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048071.5476086}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5e0b9b37e24b5df0d9d73104ae3c0bcc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5e0b9b37e24b5df0d9d73104ae3c0bcc/output.pkl Binary files differnew file mode 100644 index 0000000..6e5e40b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5e0b9b37e24b5df0d9d73104ae3c0bcc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5eb403637db80d62131d2ea39229f773/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5eb403637db80d62131d2ea39229f773/metadata.json new file mode 100644 index 0000000..8fb3eab --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5eb403637db80d62131d2ea39229f773/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6669518947601318, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and lung adenocarcinoma. Given list is: HLA-B, CFH, PSCA, TERT, USHBP1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989584.9799592}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5eb403637db80d62131d2ea39229f773/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5eb403637db80d62131d2ea39229f773/output.pkl Binary files differnew file mode 100644 index 0000000..c41ccab --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5eb403637db80d62131d2ea39229f773/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f0205c3be33c18499465a92e17f3430/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f0205c3be33c18499465a92e17f3430/metadata.json new file mode 100644 index 0000000..79c2341 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f0205c3be33c18499465a92e17f3430/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6840224266052246, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with opiate dependence and cervix carcinoma. Given list is: SCN1A, ADGRV1, AHR, THADA, CASZ1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048008.5024242}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f0205c3be33c18499465a92e17f3430/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f0205c3be33c18499465a92e17f3430/output.pkl Binary files differnew file mode 100644 index 0000000..4b9404f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f0205c3be33c18499465a92e17f3430/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f2c0b4418b74584665dd6aee8e9a842/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f2c0b4418b74584665dd6aee8e9a842/metadata.json new file mode 100644 index 0000000..f28e337 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f2c0b4418b74584665dd6aee8e9a842/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6029481887817383, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with marginal zone lymphoma and diffuse large B-cell lymphoma. Given list is: FHOD3, PBX2, RP1, KALRN, AHR'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048296.603754}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f2c0b4418b74584665dd6aee8e9a842/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f2c0b4418b74584665dd6aee8e9a842/output.pkl Binary files differnew file mode 100644 index 0000000..f64d899 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/5f2c0b4418b74584665dd6aee8e9a842/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/60954cfa78666258cac6de36550a7dba/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/60954cfa78666258cac6de36550a7dba/metadata.json new file mode 100644 index 0000000..22945a1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/60954cfa78666258cac6de36550a7dba/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48581862449645996, "input_args": {"instruction": "'Context: Disease oropharynx cancer associates Gene HLA-DQB1. Disease oropharynx cancer associates Gene ADH1B.. Variant rs9266329 associates Disease oropharynx cancer. Variant rs189602139 associates Disease oropharynx cancer. Variant rs2523679 associates Disease oropharynx cancer. Disease oral cavity cancer associates Gene HLA-DQB1. Disease oral cavity cancer associates Gene GPN1.. Disease oral cavity cancer associates Gene ADH1B. Variant rs121909224 associates Disease oral cavity cancer. Variant rs8181047 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Variant rs121913277 associates Disease oral cavity cancer. \\nQuestion: Out of the given list, which Gene is associated with oropharynx cancer and oral cavity cancer. Given list is: MYBPC3, KIF1B, DGKK, HLA-DQB1, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990067.501472}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/60954cfa78666258cac6de36550a7dba/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/60954cfa78666258cac6de36550a7dba/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/60954cfa78666258cac6de36550a7dba/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6098d54c05d2e1ded4de5cfb72e67763/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6098d54c05d2e1ded4de5cfb72e67763/metadata.json new file mode 100644 index 0000000..13fe856 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6098d54c05d2e1ded4de5cfb72e67763/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8110325336456299, "input_args": {"instruction": "'Context: Disease keratosis associates Gene KRT16. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene DSG1. Disease keratosis associates Gene SMARCAD1. Disease keratosis associates Gene SASH1. Disease keratosis associates Gene PERP. Disease keratosis associates Gene KDSR. Disease ontology identifier of keratosis is DOID:161. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene WNT10A. Disease squamous cell papilloma resembles Disease keratosis. Disease keratosis associates Gene VPS33B. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene GJB3. Disease epidermodysplasia verruciformis resembles Disease keratosis. Disease keratosis associates Gene AAGAB. Disease keratosis localizes Anatomy mucosa of larynx. Disease keratosis associates Gene SLURP1. Disease keratosis associates Gene GJA1. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene CAST. Disease keratosis associates Gene DSP. Disease keratosis associates Gene KANK2. Disease keratosis presents Symptom Skin Manifestations. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene GJB6. Disease keratosis localizes Anatomy skin epidermis. Disease UV-sensitive syndrome isa Disease skin disease. Disease UV-sensitive syndrome associates Gene ERCC8.. \\nQuestion: Out of the given list, which Variant is associated with skin sensitivity to sun and keratinocyte carcinoma\"@e. Given list is: rs1042704, rs6059655, rs34396849, rs10052804, rs11747125'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049110.3507228}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6098d54c05d2e1ded4de5cfb72e67763/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6098d54c05d2e1ded4de5cfb72e67763/output.pkl Binary files differnew file mode 100644 index 0000000..988ad87 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6098d54c05d2e1ded4de5cfb72e67763/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6113de6b5aae9e4a508a948ae09d86db/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6113de6b5aae9e4a508a948ae09d86db/metadata.json new file mode 100644 index 0000000..03635fe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6113de6b5aae9e4a508a948ae09d86db/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46631407737731934, "input_args": {"instruction": "'Context: Disease urticaria associates Gene TPSB2. Disease urticaria associates Gene ZNF728. Variant rs143547788 associates Disease urticaria. Variant rs3750996 associates Disease urticaria. Variant rs56043070 associates Disease urticaria. Disease urticaria associates Gene PTPN22. Disease urticaria associates Gene STIM1. Disease urticaria associates Gene GCSAML. Variant rs11030639 associates Disease urticaria. Disease urticaria isa Disease skin disease. Disease allergic urticaria isa Disease urticaria. Disease urticaria resembles Disease autoimmune thyroiditis. Disease urticaria resembles Disease occupational dermatitis. Disease urticaria resembles Disease cutaneous mastocytosis. Disease urticaria resembles Disease plasma cell neoplasm. Disease male breast cancer associates Gene RAD51B. Variant rs3803662 associates Disease male breast cancer. Variant rs1314913 associates Disease male breast cancer.. Variant rs78540526 associates Disease male breast cancer. Variant rs3757322 associates Disease male breast cancer. Variant rs554219 associates Disease male breast cancer. Disease male breast cancer associates Gene CCDC170. Variant rs9397437 associates Disease male breast cancer. Variant rs9383938 associates Disease male breast cancer. Disease male breast cancer associates Gene ESR1. Disease ontology identifier of male breast cancer is DOID:1614. Disease male breast cancer resembles Disease hereditary breast ovarian cancer syndrome. Disease male breast cancer resembles Disease sweat gland benign neoplasm. \\nQuestion: Out of the given list, which Gene is associated with urticaria and male breast cancer. Given list is: TGM2, TENM2, HLA-B, RAD51B, GSDMB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048249.3454597}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6113de6b5aae9e4a508a948ae09d86db/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6113de6b5aae9e4a508a948ae09d86db/output.pkl Binary files differnew file mode 100644 index 0000000..c5a6bee --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6113de6b5aae9e4a508a948ae09d86db/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6156e31422ed7e708d7ef80b15d050a6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6156e31422ed7e708d7ef80b15d050a6/metadata.json new file mode 100644 index 0000000..41d572a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6156e31422ed7e708d7ef80b15d050a6/metadata.json @@ -0,0 +1 @@ +{"duration": 19.608975172042847, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and interstitial lung disease. Given list is: TERT, YLPM1, FTO, SHTN1, IL23R'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048346.2009113}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6156e31422ed7e708d7ef80b15d050a6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6156e31422ed7e708d7ef80b15d050a6/output.pkl Binary files differnew file mode 100644 index 0000000..53f0ef7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6156e31422ed7e708d7ef80b15d050a6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61b4eedf2f4f44bdbcf302a4d764fddc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61b4eedf2f4f44bdbcf302a4d764fddc/metadata.json new file mode 100644 index 0000000..b998c0e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61b4eedf2f4f44bdbcf302a4d764fddc/metadata.json @@ -0,0 +1 @@ +{"duration": 1.4236927032470703, "input_args": {"instruction": "'Context: Disease systemic scleroderma associates Gene HLA-DRA. Variant rs11642873 associates Disease systemic scleroderma. Variant rs62478615 associates Disease systemic scleroderma. Variant rs4681851 associates Disease systemic scleroderma. Variant HLA-DRB1*11:04 associates Disease systemic scleroderma. Variant rs8109496 associates Disease systemic scleroderma. Variant rs45471499 associates Disease systemic scleroderma. Variant rs3790566 associates Disease systemic scleroderma. Variant rs4554699 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene HLA-DPA1. Variant rs36073657 associates Disease systemic scleroderma. Variant rs12531711 associates Disease systemic scleroderma. Variant rs6457617 associates Disease systemic scleroderma. Variant rs3792783 associates Disease systemic scleroderma. Variant rs9884090 associates Disease systemic scleroderma. Variant rs76285340 associates Disease systemic scleroderma. Variant rs443198 associates Disease systemic scleroderma. Variant rs589446 associates Disease systemic scleroderma. Variant rs1378942 associates Disease systemic scleroderma. Variant rs3129763 associates Disease systemic scleroderma. Variant rs2409781 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene IL12RB1. Variant rs12534421 associates Disease systemic scleroderma. Variant rs35677470 associates Disease systemic scleroderma. Variant rs3821236 associates Disease systemic scleroderma. Variant rs9296015 associates Disease systemic scleroderma. Gene MIR503 associates Disease systemic scleroderma. Variant rs4731532 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene GSDMA. Gene MIR129-1 associates Disease systemic scleroderma. Variant rs3129882 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene GSDMB. Disease systemic scleroderma associates Gene STAT4. Variant rs4317244 associates Disease systemic scleroderma. Gene MIR129-2 associates Disease systemic scleroderma. Variant rs1422673 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene IL12RB2. Variant rs3894194 associates Disease systemic scleroderma. Variant rs685985 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene IRF5. Variant rs4076852 associates Disease systemic scleroderma. Variant rs4134466 associates Disease systemic scleroderma. Variant rs987870 associates Disease systemic scleroderma. Variant rs9275390 associates Disease systemic scleroderma. Variant rs883770 associates Disease systemic scleroderma. Disease myositis associates Gene HLA-B. Disease myositis associates Gene STAT4. Disease myositis associates Gene FOXP3. Variant rs116088953 associates Disease myositis. Variant rs115146037 associates Disease myositis. Disease myositis associates Gene TLR4. Disease myositis associates Gene IL10. Variant DRB1*15:01 associates Disease myositis. Disease myositis associates Gene STING1. Variant DRB1*15 associates Disease myositis. Disease myositis associates Gene PTPN22. Variant rs116662199 associates Disease myositis. Disease myositis associates Gene TNFRSF1A. Disease myositis associates Gene IL12A. Variant rs3130614 associates Disease myositis. Variant DRB1*03:01 associates Disease myositis. Disease myositis associates Gene IFNGR1. Disease myositis associates Gene TREX1. Disease myositis associates Gene IRF4. Variant DQB1*02:01 associates Disease myositis. Variant DPB1*01:01 associates Disease myositis. Variant rs114012716 associates Disease myositis. Variant DRB1*03 associates Disease myositis. Variant rs114388793 associates Disease myositis. Variant rs115902351 associates Disease myositis. Variant rs114042950 associates Disease myositis. Disease myositis associates Gene C4A. Variant DQA1*05:01 associates Disease myositis. Variant rs114771815 associates Disease myositis. Variant rs114050967 associates Disease myositis. Disease myositis associates Gene IL23R. Variant B*08:01 associates Disease myositis. Disease myositis associates Gene LSM11. Disease myositis associates Gene COX3. Disease myositis associates Gene COX1. Disease myositis associates Gene ADAR. Disease myositis associates Gene HNRNPA2B1. Disease myositis associates Gene CAV3. Disease myositis associates Gene PSTPIP1. Disease myositis associates Gene CCR1. Disease myositis associates Gene PSMB4. Variant B*08 associates Disease myositis. Variant rs188088967 associates Disease myositis. Disease myositis associates Gene PSMB9. Disease myositis associates Gene RNASEH2B. \\nQuestion: Out of the given list, which Gene is associated with systemic scleroderma and myositis. Given list is: HLA-DPB1, STAT4, UGT1A9, HLA-DQA1, TNRC6B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047944.3574405}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61b4eedf2f4f44bdbcf302a4d764fddc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61b4eedf2f4f44bdbcf302a4d764fddc/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61b4eedf2f4f44bdbcf302a4d764fddc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61bd4299e0ae118f779b7a9007605490/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61bd4299e0ae118f779b7a9007605490/metadata.json new file mode 100644 index 0000000..0bf03ff --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61bd4299e0ae118f779b7a9007605490/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6156892776489258, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriatic arthritis and myelodysplastic syndrome. Given list is: EPDR1, HLA-B, SFRP4, PNPLA3, ARMS2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048747.7890112}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61bd4299e0ae118f779b7a9007605490/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61bd4299e0ae118f779b7a9007605490/output.pkl Binary files differnew file mode 100644 index 0000000..39a031c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/61bd4299e0ae118f779b7a9007605490/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62ec13ab3991d36b282081e82f3a685c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62ec13ab3991d36b282081e82f3a685c/metadata.json new file mode 100644 index 0000000..4a2916a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62ec13ab3991d36b282081e82f3a685c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6299591064453125, "input_args": {"instruction": "'Context: Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Arthralgia.. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene IL2RA. Disease allergic rhinitis associates Gene TNFSF4. Disease allergic rhinitis associates Gene FOSL2. Disease allergic rhinitis associates Gene SLC15A2. Disease allergic rhinitis associates Gene TNFRSF11A. Disease allergic rhinitis associates Gene HLA-DQA1. Variant rs143021546 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs17142799 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC27A4. Variant rs950881 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Variant rs9442514 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1B. Disease allergic rhinitis associates Gene IL1RL1. Variant rs11671925 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs5743604 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DMB. Variant rs28407950 associates Disease allergic rhinitis. Variant rs3793079 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL7R. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene SULT1A1. Variant rs6479828 associates Disease allergic rhinitis. Variant rs1140310 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs4939490 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL13. Disease allergic rhinitis associates Gene ZBTB38. Variant rs12509403 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Variant rs9272545 associates Disease allergic rhinitis. Variant rs3128967 associates Disease allergic rhinitis. Variant rs7749543 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Variant rs9276796 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene REL. Variant rs17133587 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Variant rs34004019 associates Disease allergic rhinitis. Variant rs35597970 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene FOXO1. Disease allergic rhinitis associates Gene PRDM16. Variant rs130071 associates Disease allergic rhinitis. Variant rs17454584 associates Disease allergic rhinitis. Variant rs13277355 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene NFKB1. Variant rs13165038 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene LPP. Variant rs61192126 associates Disease allergic rhinitis. Variant rs13185930 associates Disease allergic rhinitis. Variant rs111371454 associates Disease allergic rhinitis. Variant rs4722758 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene CSF2RB. Variant rs11539209 associates Disease allergic rhinitis. Variant rs1950897 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD51B. Variant rs12952581 associates Disease allergic rhinitis. Variant rs1438673 associates Disease allergic rhinitis.. Variant rs4845604 associates Disease allergic rhinitis. Variant rs16858573 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Variant rs4771332 associates Disease allergic rhinitis. Variant rs35350651 associates Disease allergic rhinitis. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and allergic rhinitis. Given list is: IL2RA, SLC14A2, HLA-B, TNFSF13, ZEB2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048306.439345}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62ec13ab3991d36b282081e82f3a685c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62ec13ab3991d36b282081e82f3a685c/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62ec13ab3991d36b282081e82f3a685c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62f9169b47b059b0af7bd27a186daad5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62f9169b47b059b0af7bd27a186daad5/metadata.json new file mode 100644 index 0000000..d6e6145 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62f9169b47b059b0af7bd27a186daad5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.561079740524292, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with hypothyroidism and differentiated thyroid gland carcinoma. Given list is: PNPLA3, RELN, RP1, STAT4, VAV3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989704.0139754}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62f9169b47b059b0af7bd27a186daad5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62f9169b47b059b0af7bd27a186daad5/output.pkl Binary files differnew file mode 100644 index 0000000..72bb656 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/62f9169b47b059b0af7bd27a186daad5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6376da1508acc2b0c9bdc3ec19349f18/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6376da1508acc2b0c9bdc3ec19349f18/metadata.json new file mode 100644 index 0000000..5ddc8f2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6376da1508acc2b0c9bdc3ec19349f18/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7266132831573486, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with autoimmune disease and anti-neutrophil antibody associated vasculitis. Given list is: rs2310752, rs7528604, rs6679677, rs34691223, rs2963222'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049119.4950273}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6376da1508acc2b0c9bdc3ec19349f18/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6376da1508acc2b0c9bdc3ec19349f18/output.pkl Binary files differnew file mode 100644 index 0000000..1d511c9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6376da1508acc2b0c9bdc3ec19349f18/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/638ce208924d1bad250f431f79666abf/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/638ce208924d1bad250f431f79666abf/metadata.json new file mode 100644 index 0000000..d54cc3a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/638ce208924d1bad250f431f79666abf/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5793712139129639, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease collagenous colitis resembles Disease toxic megacolon. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease protein-losing enteropathy. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene TCF19. Disease membranous glomerulonephritis associates Gene PRKCD. Variant rs230540 associates Disease membranous glomerulonephritis.. Variant rs9405192 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs3134945 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene PSORS1C1. Variant rs389884 associates Disease membranous glomerulonephritis. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Variant rs1265159 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene FOXP3. Disease membranous glomerulonephritis associates Gene SLC7A7. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs7750641 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene GPANK1. Disease membranous glomerulonephritis associates Gene TSBP1. Variant rs3115663 associates Disease membranous glomerulonephritis. Variant rs2187668 associates Disease membranous glomerulonephritis. \\nQuestion: Out of the given list, which Gene is associated with collagenous colitis and membranous glomerulonephritis. Given list is: PHACTR1, CASZ1, PNPLA3, HLA-DQA1, ATP2B1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047724.8846889}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/638ce208924d1bad250f431f79666abf/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/638ce208924d1bad250f431f79666abf/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/638ce208924d1bad250f431f79666abf/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/63c8885aae66f8ad1704b1eb3ec155ad/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/63c8885aae66f8ad1704b1eb3ec155ad/metadata.json new file mode 100644 index 0000000..d14e0ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/63c8885aae66f8ad1704b1eb3ec155ad/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6787662506103516, "input_args": {"instruction": "'Context: Disease lung adenocarcinoma associates Gene BTNL2. Gene MIR3941 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Gene MIR520B associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Gene MIR132 associates Disease lung adenocarcinoma. Gene MIR101-1 associates Disease lung adenocarcinoma. Variant rs13314271 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Gene MIR34C associates Disease lung adenocarcinoma. Gene MIR423 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Gene MIR590 associates Disease lung adenocarcinoma. Gene MIR449B associates Disease lung adenocarcinoma. Gene MIR373 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs150036236 associates Disease lung adenocarcinoma. Variant rs397507484 associates Disease lung adenocarcinoma. Gene MIR592 associates Disease lung adenocarcinoma. Gene MIR519D associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Gene MIR326 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Gene MIR34A associates Disease lung adenocarcinoma. Variant rs753660142 associates Disease lung adenocarcinoma. Gene MIR134 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Gene MIR95 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene ATM. Disease lung adenocarcinoma associates Gene CHRNA3. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs397507483 associates Disease lung adenocarcinoma. Gene MIR519A1 associates Disease lung adenocarcinoma. Gene MIR331 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs397516896 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs138729528 associates Disease lung adenocarcinoma. Gene MIR411 associates Disease lung adenocarcinoma. Variant rs1057519932 associates Disease lung adenocarcinoma. Gene MIR200C associates Disease lung adenocarcinoma. Gene MIR370 associates Disease lung adenocarcinoma. Gene MIR361 associates Disease lung adenocarcinoma. Gene MIR200B associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs1057519935 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs1057519998 associates Disease lung adenocarcinoma. Gene MIR96 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913496 associates Disease lung adenocarcinoma. Variant rs13080835 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Gene MIR196B associates Disease lung adenocarcinoma. Variant rs1057519934 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs113488022 associates Disease lung adenocarcinoma. Gene MIR200A associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene CHRNA5. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs1057519990 associates Disease lung adenocarcinoma. Variant rs121913499 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Gene MIR608 associates Disease lung adenocarcinoma. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene TUBB. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene PALB2. Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene SLC25A11. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene ALX3. Disease central nervous system cancer associates Gene ALX1. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene TMEM106B. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene ASCL1. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene NRAS. Disease central nervous system cancer associates Gene ASXL1. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene GLI2. Disease central nervous system cancer associates Gene SETBP1. Disease central nervous system cancer associates Gene GNAS. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene RAF1. Disease central nervous system cancer associates Gene SMO. Disease central nervous system cancer associates Gene GLI3. Disease central nervous system cancer associates Gene KLLN. Disease central nervous system cancer associates Gene BRD4. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene MBD4. Disease central nervous system cancer associates Gene TRAF7. Disease central nervous system cancer associates Gene POLD1. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene NTHL1. Disease central nervous system cancer associates Gene ZSWIM6. Disease central nervous system cancer associates Gene ARMC5. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene FAT4. Disease central nervous system cancer associates Gene SETD2. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TSC2. Disease central nervous system cancer associates Gene APC2. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene LMNA. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene CDKN1B. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene ZIC2. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NSD1. Disease central nervous system cancer associates Gene GPC4. Disease central nervous system cancer associates Gene POLR2A. Disease central nervous system cancer associates Gene MLH3. Disease central nervous system cancer associates Gene LUZP1. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ELP1. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and central nervous system cancer. Given list is: POU5F1B, SCN1A, STAT4, TERT, BTNL2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048364.8752797}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/63c8885aae66f8ad1704b1eb3ec155ad/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/63c8885aae66f8ad1704b1eb3ec155ad/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/63c8885aae66f8ad1704b1eb3ec155ad/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6425b7bafdc5bcbf999e162c4612df69/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6425b7bafdc5bcbf999e162c4612df69/metadata.json new file mode 100644 index 0000000..ce16440 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6425b7bafdc5bcbf999e162c4612df69/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5450131893157959, "input_args": {"instruction": "'Context: Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN1B. Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene PSCA. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer presents Symptom Asthenia. Disease duodenal ulcer associates Gene JRK. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer presents Symptom Dyspepsia. Compound Anaprazole treats Disease duodenal ulcer. Disease duodenal ulcer presents Symptom Abdominal Pain. Compound CID 16685690 treats Disease duodenal ulcer. Disease atrophic gastritis associates Gene IFIH1. Variant rs2294008 associates Disease atrophic gastritis.. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene PSCA. Disease atrophic gastritis associates Gene DEF6. Disease atrophic gastritis associates Gene IL1B. Disease atrophic gastritis associates Gene CDH1. Disease atrophic gastritis associates Gene NFKB1. Gene MIR155 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene CTLA4. Disease atrophic gastritis associates Gene IL1RN. Disease atrophic gastritis associates Gene KRAS. \\nQuestion: Out of the given list, which Gene is associated with duodenal ulcer and atrophic gastritis. Given list is: SLC17A4, GATA3, MST1, PSCA, SCN1A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990058.8487294}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6425b7bafdc5bcbf999e162c4612df69/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6425b7bafdc5bcbf999e162c4612df69/output.pkl Binary files differnew file mode 100644 index 0000000..33ad383 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6425b7bafdc5bcbf999e162c4612df69/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64916d897b7ca9a9f69e72a920ffc5b2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64916d897b7ca9a9f69e72a920ffc5b2/metadata.json new file mode 100644 index 0000000..2f86ca8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64916d897b7ca9a9f69e72a920ffc5b2/metadata.json @@ -0,0 +1 @@ +{"duration": 22.731646060943604, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and lung adenocarcinoma. Given list is: CHST11, SYT14, TERT, BARD1, USHBP1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988591.4341102}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64916d897b7ca9a9f69e72a920ffc5b2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64916d897b7ca9a9f69e72a920ffc5b2/output.pkl Binary files differnew file mode 100644 index 0000000..4ae2f23 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64916d897b7ca9a9f69e72a920ffc5b2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64bf1cd3b6a1095f3bb08457cdb83da2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64bf1cd3b6a1095f3bb08457cdb83da2/metadata.json new file mode 100644 index 0000000..07f31a3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64bf1cd3b6a1095f3bb08457cdb83da2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5624556541442871, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and myeloproliferative neoplasm. Given list is: ERAP1, SNCA, TERT, ULK4, ADGRG6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989510.1771533}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64bf1cd3b6a1095f3bb08457cdb83da2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64bf1cd3b6a1095f3bb08457cdb83da2/output.pkl Binary files differnew file mode 100644 index 0000000..48ab16c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64bf1cd3b6a1095f3bb08457cdb83da2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64face32ca9bf1200fbe7bcaf5f722df/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64face32ca9bf1200fbe7bcaf5f722df/metadata.json new file mode 100644 index 0000000..7414a22 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64face32ca9bf1200fbe7bcaf5f722df/metadata.json @@ -0,0 +1 @@ +{"duration": 0.587186336517334, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oral cavity cancer and autoimmune hepatitis. Given list is: KAT2B, TTLL5, HLA-DQB1, HOXD3, SAMM50'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989763.6839561}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64face32ca9bf1200fbe7bcaf5f722df/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64face32ca9bf1200fbe7bcaf5f722df/output.pkl Binary files differnew file mode 100644 index 0000000..b93cb42 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/64face32ca9bf1200fbe7bcaf5f722df/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66101ea22e5e574c58861806c4641873/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66101ea22e5e574c58861806c4641873/metadata.json new file mode 100644 index 0000000..ec7e2d8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66101ea22e5e574c58861806c4641873/metadata.json @@ -0,0 +1 @@ +{"duration": 17.532826900482178, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with duodenal ulcer and atrophic gastritis. Given list is: SLC17A4, GATA3, MST1, PSCA, SCN1A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990058.0794413}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66101ea22e5e574c58861806c4641873/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66101ea22e5e574c58861806c4641873/output.pkl Binary files differnew file mode 100644 index 0000000..3e2b217 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66101ea22e5e574c58861806c4641873/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66103ba6736e926711dd8bedcf7b7c7b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66103ba6736e926711dd8bedcf7b7c7b/metadata.json new file mode 100644 index 0000000..347f067 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66103ba6736e926711dd8bedcf7b7c7b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.48668646812438965, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with collagenous colitis and cutaneous lupus erythematosus. Given list is: MYH7, HLA-DQA1, HLA-DQA1, TERT, BARD1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989940.8583803}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66103ba6736e926711dd8bedcf7b7c7b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66103ba6736e926711dd8bedcf7b7c7b/output.pkl Binary files differnew file mode 100644 index 0000000..4faca64 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66103ba6736e926711dd8bedcf7b7c7b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66931df3b639ee2936176a6a0f8ea15e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66931df3b639ee2936176a6a0f8ea15e/metadata.json new file mode 100644 index 0000000..6fe130f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66931df3b639ee2936176a6a0f8ea15e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5804464817047119, "input_args": {"instruction": "'Context: Disease endometrial cancer associates Gene SLC6A17. Gene ATXN7L2 marker Disease endometrial cancer. Gene SLC6A12 marker Disease endometrial cancer. Gene SLC6A9 marker Disease endometrial cancer. Disease endometrial cancer associates Gene SEC23B. Gene COL26A1 expressedin Disease endometrial cancer. Gene MIR27B associates Disease endometrial cancer. Gene KRT27 expressedin Disease endometrial cancer. Gene SLC6A6 marker Disease endometrial cancer. Gene CCL4 marker Disease endometrial cancer. Gene CLDN6 marker Disease endometrial cancer. Variant rs1057520029 associates Disease endometrial cancer. Gene SLC26A11 marker Disease endometrial cancer. Gene SCGB3A1 expressedin Disease endometrial cancer. Gene ACAA1 marker Disease endometrial cancer. Gene MIR9-3 associates Disease endometrial cancer. Variant rs1057520027 associates Disease endometrial cancer. Variant rs1057520028 associates Disease endometrial cancer. Gene COL9A1 expressedin Disease endometrial cancer. Disease endometrial cancer associates Gene CDH1. Gene TPH1 expressedin Disease endometrial cancer. Gene CCDC88A marker Disease endometrial cancer. Gene SCGB2A1 expressedin Disease endometrial cancer. Variant rs1431264077 associates Disease endometrial cancer. Gene MIR29C associates Disease endometrial cancer. Gene SLC38A9 marker Disease endometrial cancer. Variant rs1057519901 associates Disease endometrial cancer. Gene SLC38A7 marker Disease endometrial cancer. Variant rs387906678 associates Disease endometrial cancer. Gene SLC26A2 marker Disease endometrial cancer. Gene C11orf97 expressedin Disease endometrial cancer. Gene GLYATL2 expressedin Disease endometrial cancer. Gene MIR9-1 associates Disease endometrial cancer. Gene CTNNA2 expressedin Disease endometrial cancer. Gene CLDN16 marker Disease endometrial cancer. Variant rs1057519854 associates Disease endometrial cancer. Gene MIR9-2 associates Disease endometrial cancer. Gene C6orf118 expressedin Disease endometrial cancer. Gene SLC23A1 expressedin Disease endometrial cancer. Gene CST4 expressedin Disease endometrial cancer. Gene SLC10A4 expressedin Disease endometrial cancer. Gene ARMC3 expressedin Disease endometrial cancer. Gene ACAT2 marker Disease endometrial cancer. Gene C11orf16 expressedin Disease endometrial cancer. Gene CRYBA4 expressedin Disease endometrial cancer. Gene SCGB1D1 expressedin Disease endometrial cancer. Gene CCNA1 expressedin Disease endometrial cancer. Gene STX18 expressedin Disease endometrial cancer. Gene ADCY9 marker Disease endometrial cancer. Gene SLC22A16 expressedin Disease endometrial cancer. Gene SLC29A2 marker Disease endometrial cancer. Gene FOXB1 expressedin Disease endometrial cancer. Gene SLC9A7 marker Disease endometrial cancer. Gene SEC61B marker Disease endometrial cancer. Gene GLYATL3 expressedin Disease endometrial cancer. Gene CLDN1 marker Disease endometrial cancer. Gene MIR103B2 associates Disease endometrial cancer. Gene C11orf98 marker Disease endometrial cancer. Gene SCGB2A1 marker Disease endometrial cancer. Gene CCDC17 expressedin Disease endometrial cancer. Gene SLC38A1 marker Disease endometrial cancer. Gene MIR125B2 associates Disease endometrial cancer. Gene ACAA2 marker Disease endometrial cancer. Disease endometrial cancer associates Gene KLLN. Gene MIR199B associates Disease endometrial cancer. Gene SLC12A2 marker Disease endometrial cancer. Gene CFAP251 marker Disease endometrial cancer. Gene SLC47A1 marker Disease endometrial cancer. Gene SMAD7 marker Disease endometrial cancer. Gene MIR103B1 associates Disease endometrial cancer. Gene C11orf71 marker Disease endometrial cancer. Gene SSC4D marker Disease endometrial cancer. Gene SLC25A19 marker Disease endometrial cancer. Gene SLC25A35 expressedin Disease endometrial cancer. Gene ABHD16A marker Disease endometrial cancer. Disease sclerosing cholangitis associates Gene ATXN2. Disease sclerosing cholangitis associates Gene UBASH3A. Disease sclerosing cholangitis associates Gene FOXP1. Disease sclerosing cholangitis associates Gene TCF4. Variant rs11649613 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene CCDC88B. Variant rs6058869 associates Disease sclerosing cholangitis. Variant rs4243971 associates Disease sclerosing cholangitis. Variant rs9687958 associates Disease sclerosing cholangitis. Variant rs61861422 associates Disease sclerosing cholangitis. Variant rs3197999 associates Disease sclerosing cholangitis. Variant rs4986790 associates Disease sclerosing cholangitis. Variant rs853974 associates Disease sclerosing cholangitis. Variant rs114202211 associates Disease sclerosing cholangitis. Variant rs4655215 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene HDAC7. Variant rs61839660 associates Disease sclerosing cholangitis. Variant rs4851529 associates Disease sclerosing cholangitis. Variant rs11306716 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene INPP5A. Disease sclerosing cholangitis associates Gene GPR35. Variant rs74956615 associates Disease sclerosing cholangitis. Variant rs11574938 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene CLEC16A. Disease sclerosing cholangitis associates Gene PRKD2. Variant rs6556411 associates Disease sclerosing cholangitis. Variant rs3184504 associates Disease sclerosing cholangitis. Variant rs145832854 associates Disease sclerosing cholangitis. Variant rs4946717 associates Disease sclerosing cholangitis. Variant rs4703855 associates Disease sclerosing cholangitis. Disease sclerosing cholangitis associates Gene SH2B3. Disease sclerosing cholangitis associates Gene SIK2. Disease sclerosing cholangitis associates Gene MMEL1. Variant rs12932970 associates Disease sclerosing cholangitis. Variant rs2145623 associates Disease sclerosing cholangitis. Variant rs4845604 associates Disease sclerosing cholangitis. Variant rs12942547 associates Disease sclerosing cholangitis. Variant rs59867199 associates Disease sclerosing cholangitis. Variant rs61802846 associates Disease sclerosing cholangitis. Variant rs28550029 associates Disease sclerosing cholangitis. Variant rs11749391 associates Disease sclerosing cholangitis. Variant rs28701841 associates Disease sclerosing cholangitis. Variant rs60652743 associates Disease sclerosing cholangitis. Variant rs4676410 associates Disease sclerosing cholangitis. Variant rs4672505 associates Disease sclerosing cholangitis. Variant rs11749040 associates Disease sclerosing cholangitis. Variant rs6062496 associates Disease sclerosing cholangitis. Variant rs35667974 associates Disease sclerosing cholangitis. Variant rs11098964 associates Disease sclerosing cholangitis. Variant rs66504140 associates Disease sclerosing cholangitis. Variant rs12943464 associates Disease sclerosing cholangitis. Variant rs9554587 associates Disease sclerosing cholangitis. Variant rs35320439 associates Disease sclerosing cholangitis. Variant rs6651252 associates Disease sclerosing cholangitis. Variant rs4971079 associates Disease sclerosing cholangitis. Variant rs3853824 associates Disease sclerosing cholangitis. Variant rs4143332 associates Disease sclerosing cholangitis. Variant rs11675538 associates Disease sclerosing cholangitis. Variant rs6781808 associates Disease sclerosing cholangitis. Variant rs4921482 associates Disease sclerosing cholangitis. Variant rs28998802 associates Disease sclerosing cholangitis. Variant rs3747517 associates Disease sclerosing cholangitis. Variant rs80060485 associates Disease sclerosing cholangitis. Variant rs13107612 associates Disease sclerosing cholangitis. Variant rs6863411 associates Disease sclerosing cholangitis. Variant rs11750385 associates Disease sclerosing cholangitis. Variant rs34920465 associates Disease sclerosing cholangitis. Variant rs9491891 associates Disease sclerosing cholangitis. Variant rs62097857 associates Disease sclerosing cholangitis. Variant rs5757584 associates Disease sclerosing cholangitis. Variant rs11691685 associates Disease sclerosing cholangitis. Variant rs6697886 associates Disease sclerosing cholangitis. Variant rs35018800 associates Disease sclerosing cholangitis. Variant rs2266961 associates Disease sclerosing cholangitis. Variant rs35874463 associates Disease sclerosing cholangitis. \\nQuestion: Out of the given list, which Gene is associated with endometrial cancer and sclerosing cholangitis. Given list is: ATXN2, FBN1, STAT3, ADGRG6, ATG5'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048811.4601805}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66931df3b639ee2936176a6a0f8ea15e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66931df3b639ee2936176a6a0f8ea15e/output.pkl Binary files differnew file mode 100644 index 0000000..8e29b14 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66931df3b639ee2936176a6a0f8ea15e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66b5cfa1652fa08127850d54f0c82594/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66b5cfa1652fa08127850d54f0c82594/metadata.json new file mode 100644 index 0000000..08613a4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66b5cfa1652fa08127850d54f0c82594/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6564433574676514, "input_args": {"instruction": "'Context: Disease myeloproliferative neoplasm associates Gene JAK2. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Gene MIR126 associates Disease myeloproliferative neoplasm. Gene MIR15B associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene ATM. Gene MIR155 associates Disease myeloproliferative neoplasm. Gene MIR17 associates Disease myeloproliferative neoplasm. Gene MIR15A associates Disease myeloproliferative neoplasm. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene CCNO. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene CCR6. Variant rs116906005 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene STAT3. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TERT. Disease interstitial lung disease associates Gene STAT5B. Disease interstitial lung disease associates Gene ZCCHC8. Disease interstitial lung disease associates Gene ZMYND10. Disease interstitial lung disease associates Gene DNAJB13. Disease interstitial lung disease associates Gene CTC1. Disease interstitial lung disease associates Gene DNAI1. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SLC26A9. Variant rs2076295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DCTN4. Disease interstitial lung disease associates Gene MRPS22. Disease interstitial lung disease associates Gene SFTPA1. Gene MIR128-2 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ZNFX1. Disease interstitial lung disease associates Gene PLPPR1. Disease interstitial lung disease associates Gene CSF2RB. Disease interstitial lung disease associates Gene NHLRC2. Disease interstitial lung disease associates Gene RCBTB1. Disease interstitial lung disease associates Gene TP53. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene SLC6A14. Disease interstitial lung disease associates Gene DNAAF11. Disease interstitial lung disease associates Gene PTPN22. Gene MIR128-1 associates Disease interstitial lung disease. Variant rs1981997 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene COL3A1. Variant rs12610495 associates Disease interstitial lung disease. Variant rs2736100 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene BTK. Disease interstitial lung disease associates Gene DNAAF1. Disease interstitial lung disease associates Gene NUP107. Disease interstitial lung disease associates Gene CFTR. Disease interstitial lung disease associates Gene SERPINA1. Disease interstitial lung disease associates Gene IL2RA. Disease interstitial lung disease associates Gene CCDC103. Disease interstitial lung disease associates Gene SFTPB. Disease interstitial lung disease associates Gene NKX2-1. Disease interstitial lung disease associates Gene ZSWIM7. Disease interstitial lung disease associates Gene AP3B1. Variant rs12702634 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NPC2. Disease interstitial lung disease associates Gene CCDC65. Variant rs2957316 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAL1. Variant rs2034650 associates Disease interstitial lung disease. Variant rs4727443 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NSMCE3. Disease interstitial lung disease associates Gene CSF2RA. Disease interstitial lung disease associates Gene IL2RB. Variant rs73199442 associates Disease interstitial lung disease. Variant rs561398374 associates Disease interstitial lung disease. Variant rs6793295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-DRB1. Variant rs6631122 associates Disease interstitial lung disease. Variant rs6886640 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPC. Disease interstitial lung disease associates Gene SCARB2. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and interstitial lung disease. Given list is: LRMDA, TERT, CLDN14, UCK2, STAT3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047828.615805}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66b5cfa1652fa08127850d54f0c82594/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66b5cfa1652fa08127850d54f0c82594/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/66b5cfa1652fa08127850d54f0c82594/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/680e72cebb0bb87c0ffc646b61e4b013/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/680e72cebb0bb87c0ffc646b61e4b013/metadata.json new file mode 100644 index 0000000..8e8b030 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/680e72cebb0bb87c0ffc646b61e4b013/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5156135559082031, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and cervix carcinoma. Given list is: FAT3, HLA-DPA1, HLA-DQA1, CACNA1S, CACNA2D1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989651.485139}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/680e72cebb0bb87c0ffc646b61e4b013/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/680e72cebb0bb87c0ffc646b61e4b013/output.pkl Binary files differnew file mode 100644 index 0000000..4a5dced --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/680e72cebb0bb87c0ffc646b61e4b013/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/682e8fec5eaa1c0de3a96a0f07da98a3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/682e8fec5eaa1c0de3a96a0f07da98a3/metadata.json new file mode 100644 index 0000000..fd144e3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/682e8fec5eaa1c0de3a96a0f07da98a3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6536390781402588, "input_args": {"instruction": "'Context: Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene HLA-DRB1. Gene MIR146A associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-C. Variant rs76956521 associates Disease psoriatic arthritis. Gene MIR424 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL13. Gene MIR15A associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL12B. Variant rs71562294 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs114598684 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs115429782 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MUC22. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene SLC22A5. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs149997688 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene NOS2. Disease psoriatic arthritis associates Gene IL23R. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene RUNX3. Variant rs1610601 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MFSD4B. Disease psoriatic arthritis associates Gene DDR1. Disease herpes zoster associates Gene HLA-A. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene IL10. Variant rs142765674 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT1. Disease herpes zoster associates Gene STAT3. Variant rs147482218 associates Disease herpes zoster. Variant rs765885335 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Variant rs75640364 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Variant rs541558502 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene POLR3A. Variant rs117171752 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Disease peroneal neuropathy resembles Disease herpes zoster. Disease herpes zoster associates Gene LRRC32. Disease herpes zoster presents Symptom Sciatica. Disease facial nerve disease resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal nerve. Disease herpes zoster presents Symptom Hyperesthesia. Disease peroneal nerve paralysis resembles Disease herpes zoster. Disease herpes zoster presents Symptom Neuralgia. Disease neuritis resembles Disease herpes zoster. Disease trigeminal neuralgia resembles Disease herpes zoster. Disease herpes zoster presents Symptom Facial Pain. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster localizes Anatomy skin of body. Disease motor neuritis resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal nucleus of trigeminal nerve. Disease herpes zoster localizes Anatomy nerve. Disease brachial plexus neuritis resembles Disease herpes zoster. Disease facial dermatosis resembles Disease herpes zoster. Disease keratitis resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy facial nerve. Disease herpes zoster presents Symptom Toothache. Disease herpes zoster localizes Anatomy spinal nerve root. \\nQuestion: Out of the given list, which Gene is associated with psoriatic arthritis and herpes zoster. Given list is: NANOS1, TLR1, NTM, HLA-B, SCN1A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048750.567573}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/682e8fec5eaa1c0de3a96a0f07da98a3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/682e8fec5eaa1c0de3a96a0f07da98a3/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/682e8fec5eaa1c0de3a96a0f07da98a3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6986b5be98b9758dd970e596c47246e2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6986b5be98b9758dd970e596c47246e2/metadata.json new file mode 100644 index 0000000..1cdb6d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6986b5be98b9758dd970e596c47246e2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6154038906097412, "input_args": {"instruction": "'Context: Disease triple-receptor negative breast cancer associates Gene TP53. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs10771399 associates Disease triple-receptor negative breast cancer. Variant rs570295933 associates Disease lung cancer. Variant rs1057519784 associates Disease lung cancer. Variant rs41293465 associates Disease lung cancer. Gene MIR124-3 associates Disease lung cancer. Gene MIR365B associates Disease lung cancer. Gene MIR412 associates Disease lung cancer. Gene MIR361 associates Disease lung cancer. Gene MIR3662 associates Disease lung cancer. Gene MIR411 associates Disease lung cancer. Gene TRAF3IP3 marker Disease lung cancer. Gene MIR376A2 associates Disease lung cancer. Gene MIR376A1 associates Disease lung cancer. Gene MIR410 associates Disease lung cancer. Variant rs1057519783 associates Disease lung cancer. Gene MIR513A2 associates Disease lung cancer. Gene MIR574 associates Disease lung cancer. Variant rs143884981 associates Disease lung cancer. Gene IGFBP1 marker Disease lung cancer. Gene MIR31 associates Disease lung cancer. Variant rs531398630 associates Disease lung cancer. Gene MIR9-3 associates Disease lung cancer. Gene MIR614 associates Disease lung cancer. Gene MIR365A associates Disease lung cancer. Gene MIR513A1 associates Disease lung cancer. Variant rs121434569 associates Disease lung cancer. Variant rs17337514 associates Disease lung cancer. Gene MIR101-1 associates Disease lung cancer. Variant rs878855122 associates Disease lung cancer. Gene TNS4 marker Disease lung cancer. Gene LTA4H marker Disease lung cancer. Variant rs397517085 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Gene MIR570 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Gene MIR616 associates Disease lung carcinoma. Variant rs66488313 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs397516895 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Gene MIR31 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs13191445 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Disease lung carcinoma associates Gene VTI1A. Variant rs34661125 associates Disease lung carcinoma. Disease lung carcinoma associates Gene BTN3A1. Variant rs9280949 associates Disease lung carcinoma. Variant rs121913351 associates Disease lung carcinoma. Variant rs121913355 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs539960851 associates Disease breast cancer. Variant rs397508940 associates Disease breast cancer. Variant rs397508045 associates Disease breast cancer. Gene LTA4H marker Disease breast cancer. Variant rs397508983 associates Disease breast cancer. Variant rs397508867 associates Disease breast cancer. Variant rs397508874 associates Disease breast cancer. Variant rs397508979 associates Disease breast cancer. Variant rs551338531 associates Disease breast cancer. Variant rs576081828 associates Disease breast cancer. Variant rs1555285984 associates Disease breast cancer. Variant rs528541334 associates Disease breast cancer. Variant rs555381912 associates Disease breast cancer. Variant rs57936182 associates Disease breast cancer. Variant rs397508051 associates Disease breast cancer. Variant rs151198586 associates Disease breast cancer. Variant rs1555281594 associates Disease breast cancer. Variant rs1057519980 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Gene TUBA3D marker Disease breast cancer. Variant rs1399574459 associates Disease breast cancer. Variant rs397509257 associates Disease breast cancer. Variant rs4986854 associates Disease breast cancer. Variant rs1057519983 associates Disease breast cancer. Variant rs1555592914 associates Disease breast cancer. Variant rs41293511 associates Disease breast cancer. Variant rs33964119 associates Disease breast cancer. Variant rs1057519985 associates Disease breast cancer. Variant rs41293517 associates Disease breast cancer. Variant rs1057519984 associates Disease breast cancer. Disease cell type cancer associates Gene ETV4. Disease cell type cancer associates Gene ETV1. Disease cell type cancer associates Gene TYRP1. Disease cell type cancer associates Gene EGFR. Disease cell type cancer associates Gene ATM. Disease cell type cancer associates Gene KRT5. Disease cell type cancer associates Gene TPCN2. Disease cell type cancer associates Gene TERT. Disease cell type cancer associates Gene HERC2. Disease cell type cancer associates Gene KRT1. Disease cell type cancer associates Gene KRT14. Disease cell type cancer associates Gene BRCA1. Disease cell type cancer associates Gene RNF43. Disease cell type cancer associates Gene TP53. Disease cell type cancer associates Gene XRCC3. Disease cell type cancer associates Gene ROBO2. Disease cell type cancer associates Gene APOE. Disease cell type cancer associates Gene TYR. Disease cell type cancer associates Gene PTEN. Disease cell type cancer associates Gene FEV. Disease cell type cancer associates Gene IRF4. Disease cell type cancer associates Gene LAMA2. Disease cell type cancer associates Gene APOA4. Disease cell type cancer associates Gene BRCA2. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and triple-receptor negative breast cancer. Given list is: TERT, FER, TERT, PCDH15, PTK2B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988541.873985}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6986b5be98b9758dd970e596c47246e2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6986b5be98b9758dd970e596c47246e2/output.pkl Binary files differnew file mode 100644 index 0000000..bebee1c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6986b5be98b9758dd970e596c47246e2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69a575d3d6c11ebd44e5ca43eab76661/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69a575d3d6c11ebd44e5ca43eab76661/metadata.json new file mode 100644 index 0000000..44ab366 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69a575d3d6c11ebd44e5ca43eab76661/metadata.json @@ -0,0 +1 @@ +{"duration": 18.333595991134644, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriatic arthritis and Takayasu's arteritis. Given list is: TMC7, HLA-B, SLC2A9, PCDH7, PHGDH\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048746.30001}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69a575d3d6c11ebd44e5ca43eab76661/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69a575d3d6c11ebd44e5ca43eab76661/output.pkl Binary files differnew file mode 100644 index 0000000..366e5c7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69a575d3d6c11ebd44e5ca43eab76661/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69ccbfce2f6cfbc2f48f86801f308e72/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69ccbfce2f6cfbc2f48f86801f308e72/metadata.json new file mode 100644 index 0000000..2f31348 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69ccbfce2f6cfbc2f48f86801f308e72/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4524376392364502, "input_args": {"instruction": "'Context: Disease opiate dependence associates Gene CYP2B6. Variant rs2460187 associates Disease opiate dependence. Variant rs2222243 associates Disease opiate dependence. Disease opiate dependence associates Gene ADGRV1. Variant rs12442183 associates Disease opiate dependence. Variant rs2460186 associates Disease opiate dependence. Disease opiate dependence associates Gene CSNK1E. Variant rs2030272 associates Disease opiate dependence. Disease opiate dependence associates Gene COMT. Variant rs10799590 associates Disease opiate dependence. Disease opiate dependence associates Gene DRD4. Disease opiate dependence associates Gene HTR1B. Variant rs2366929 associates Disease opiate dependence. Variant rs201123820 associates Disease opiate dependence. Variant rs1970606 associates Disease opiate dependence. Disease opiate dependence associates Gene DRD2. Disease opiate dependence associates Gene FKBP5. Disease opiate dependence associates Gene GRIN2A. Disease opiate dependence associates Gene CNIH3. Disease opiate dependence associates Gene GABRG1. Disease opiate dependence associates Gene ABCB1. Disease cervix carcinoma associates Gene TUBB. Gene MIR4262 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. Disease cervix carcinoma associates Gene HLA-G. Gene MIR424 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Gene MIR421 associates Disease cervix carcinoma. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Gene MIR429 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ADGRV1. Disease cervix carcinoma associates Gene HLA-DQA1. Gene MIR590 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-DQA2. Variant rs57746686 associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant HAL-DRB1*13 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene LTA. Variant rs140668832 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Gene MIR296 associates Disease cervix carcinoma. Gene MIR10A associates Disease cervix carcinoma. Gene MIR433 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Variant rs115137622 associates Disease cervix carcinoma. Gene MIR143 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs114115115 associates Disease cervix carcinoma. Gene MIR506 associates Disease cervix carcinoma. Gene MIR106B associates Disease cervix carcinoma. Gene MIR142 associates Disease cervix carcinoma. Gene MIR502 associates Disease cervix carcinoma. Gene MIR139 associates Disease cervix carcinoma. Gene MIR503 associates Disease cervix carcinoma. \\nQuestion: Out of the given list, which Gene is associated with opiate dependence and cervix carcinoma. Given list is: SCN1A, ADGRV1, AHR, THADA, CASZ1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048009.3110335}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69ccbfce2f6cfbc2f48f86801f308e72/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69ccbfce2f6cfbc2f48f86801f308e72/output.pkl Binary files differnew file mode 100644 index 0000000..2aa0c6b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69ccbfce2f6cfbc2f48f86801f308e72/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69dbbaf51aeaa8b48b6c74ff2828666d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69dbbaf51aeaa8b48b6c74ff2828666d/metadata.json new file mode 100644 index 0000000..ed7efac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69dbbaf51aeaa8b48b6c74ff2828666d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5569419860839844, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with atrophic gastritis and duodenal ulcer. Given list is: rs4459895, rs12203592, rs9275260, rs12524487, rs2294008'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048990.016245}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69dbbaf51aeaa8b48b6c74ff2828666d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69dbbaf51aeaa8b48b6c74ff2828666d/output.pkl Binary files differnew file mode 100644 index 0000000..d243dad --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69dbbaf51aeaa8b48b6c74ff2828666d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69f698b7c9870924452b609b467f0cfd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69f698b7c9870924452b609b467f0cfd/metadata.json new file mode 100644 index 0000000..fce3581 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69f698b7c9870924452b609b467f0cfd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5160386562347412, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and interstitial lung disease. Given list is: COL22A1, KIF1B, TERT, CLPTM1L, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989529.8863423}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69f698b7c9870924452b609b467f0cfd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69f698b7c9870924452b609b467f0cfd/output.pkl Binary files differnew file mode 100644 index 0000000..b49ed25 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/69f698b7c9870924452b609b467f0cfd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6d2c4893b162c948396f16ee3ed30536/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6d2c4893b162c948396f16ee3ed30536/metadata.json new file mode 100644 index 0000000..d9ae426 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6d2c4893b162c948396f16ee3ed30536/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5639479160308838, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease collagenous colitis resembles Disease toxic megacolon. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and collagenous colitis. Given list is: KALRN, TERT, PLA2R1, NANOS1, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989645.8788586}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6d2c4893b162c948396f16ee3ed30536/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6d2c4893b162c948396f16ee3ed30536/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6d2c4893b162c948396f16ee3ed30536/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e51ac4f99d9223d695aa380437d6915/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e51ac4f99d9223d695aa380437d6915/metadata.json new file mode 100644 index 0000000..4a616d5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e51ac4f99d9223d695aa380437d6915/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5046045780181885, "input_args": {"instruction": "\"Context: Variant rs17199328 associates Disease herpes zoster. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Variant rs9810195 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Variant rs541558502 associates Disease herpes zoster. Variant rs142765674 associates Disease herpes zoster. Variant rs147482218 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Variant rs117171752 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Variant rs2574974 associates Disease herpes zoster. Variant rs765885335 associates Disease herpes zoster. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene STAT1. Variant rs75640364 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT3. Disease herpes zoster associates Gene TMC7. Disease herpes zoster localizes Anatomy temporal artery. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene POLR3A. Disease herpes zoster associates Gene LRRC32. Disease ontology identifier of herpes zoster is DOID:8536. Disease granulomatous angiitis resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal nucleus of trigeminal nerve. Disease herpes zoster localizes Anatomy spinal nerve root. Disease herpes zoster localizes Anatomy spinal nerve. Disease herpes zoster localizes Anatomy cranial nerve. Disease herpes zoster presents Symptom Hyperesthesia. Disease herpes zoster localizes Anatomy trigeminal nerve. Disease central nervous system vasculitis resembles Disease herpes zoster. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster localizes Anatomy cornea. Disease herpes zoster localizes Anatomy spinal cord. Disease herpes zoster localizes Anatomy skin of body. Compound Mycophenolate mofetil contraindicates Disease herpes zoster. Disease herpes zoster localizes Anatomy trigeminal nucleus. Disease herpes zoster localizes Anatomy trigeminal ganglion. Disease herpes zoster localizes Anatomy pupil. Compound Mycophenolic acid contraindicates Disease herpes zoster. Disease trigeminal neuralgia resembles Disease herpes zoster. Compound Pregabalin treats Disease herpes zoster. Variant rs9271066 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs28834970 associates Disease Takayasu's arteritis. Variant rs9266745 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-B. Variant rs10919543 associates Disease Takayasu's arteritis. Variant chr6:31570670 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DQB2. Variant rs12526858 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PTK2B. Variant rs45479291 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VPS8. Variant rs2099684 associates Disease Takayasu's arteritis.. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs1713450 associates Disease Takayasu's arteritis. Variant rs76457959 associates Disease Takayasu's arteritis. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Variant rs2322599 associates Disease Takayasu's arteritis. Variant rs28749167 associates Disease Takayasu's arteritis. Variant rs12524487 associates Disease Takayasu's arteritis. Variant rs12524487\\xa0 associates Disease Takayasu's arteritis. Variant rs1383258 associates Disease Takayasu's arteritis. Variant rs4410768 associates Disease Takayasu's arteritis. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs2836883 associates Disease Takayasu's arteritis. Variant rs117298325 associates Disease Takayasu's arteritis. Variant rs2844678 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs12980600 associates Disease Takayasu's arteritis. Variant rs2069837 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. \\nQuestion: Out of the given list, which Gene is associated with herpes zoster and Takayasu's arteritis. Given list is: FAM227B, PRKN, CSNK2B, HLA-B, FGFR2\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990012.5812056}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e51ac4f99d9223d695aa380437d6915/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e51ac4f99d9223d695aa380437d6915/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e51ac4f99d9223d695aa380437d6915/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e645e0c0578a188d9acf07cfdbf6e05/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e645e0c0578a188d9acf07cfdbf6e05/metadata.json new file mode 100644 index 0000000..0db84a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e645e0c0578a188d9acf07cfdbf6e05/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6808192729949951, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriatic arthritis and psoriasis. Given list is: HLA-B, DAB2IP, TYR, FTO, FAT3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048726.5876105}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e645e0c0578a188d9acf07cfdbf6e05/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e645e0c0578a188d9acf07cfdbf6e05/output.pkl Binary files differnew file mode 100644 index 0000000..576c71d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e645e0c0578a188d9acf07cfdbf6e05/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e835e5c89f790e059ec9a003f23b8de/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e835e5c89f790e059ec9a003f23b8de/metadata.json new file mode 100644 index 0000000..402f949 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e835e5c89f790e059ec9a003f23b8de/metadata.json @@ -0,0 +1 @@ +{"duration": 2.093315601348877, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cutaneous lupus erythematosus and collagenous colitis. Given list is: MUC5B, DLEU7, BRCA2, HLA-DQA1, THADA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047940.151805}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e835e5c89f790e059ec9a003f23b8de/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e835e5c89f790e059ec9a003f23b8de/output.pkl Binary files differnew file mode 100644 index 0000000..713c298 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6e835e5c89f790e059ec9a003f23b8de/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6ed6b98c9fe8254166643163c736f6e3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6ed6b98c9fe8254166643163c736f6e3/metadata.json new file mode 100644 index 0000000..1bf5908 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6ed6b98c9fe8254166643163c736f6e3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.47440624237060547, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with herpes zoster and Takayasu's arteritis. Given list is: FAM227B, PRKN, CSNK2B, HLA-B, FGFR2\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990011.7432745}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6ed6b98c9fe8254166643163c736f6e3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6ed6b98c9fe8254166643163c736f6e3/output.pkl Binary files differnew file mode 100644 index 0000000..adab16f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6ed6b98c9fe8254166643163c736f6e3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f0527ef1e608911765de392eef56919/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f0527ef1e608911765de392eef56919/metadata.json new file mode 100644 index 0000000..a72f682 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f0527ef1e608911765de392eef56919/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4270806312561035, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with inflammatory bowel disease and Crohn's disease. Given list is: TNRC6B, ARMS2, RORA, MORC4, IL23R\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988534.7328253}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f0527ef1e608911765de392eef56919/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f0527ef1e608911765de392eef56919/output.pkl Binary files differnew file mode 100644 index 0000000..91fcae2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f0527ef1e608911765de392eef56919/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f1a674b9fe4e2568617ddd66aab6f1e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f1a674b9fe4e2568617ddd66aab6f1e/metadata.json new file mode 100644 index 0000000..19ce80f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f1a674b9fe4e2568617ddd66aab6f1e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5856859683990479, "input_args": {"instruction": "\"Context: Disease ulcerative colitis associates Gene TNFSF15. Disease ulcerative colitis associates Gene HLA-DQA1. Variant rs41291790 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene CCL20. Disease ulcerative colitis associates Gene IL10RA. Variant rs4246905 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL10. Variant rs9268877 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL23R. Variant rs9268853 associates Disease ulcerative colitis. Variant rs528766038 associates Disease ulcerative colitis. Variant rs11581607 associates Disease ulcerative colitis. Variant rs1893217 associates Disease ulcerative colitis. Variant rs4380874 associates Disease ulcerative colitis. Variant rs4409764 associates Disease ulcerative colitis. Variant rs200349593 associates Disease ulcerative colitis. Variant rs2823286 associates Disease ulcerative colitis. Variant rs3194051 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene NFKB1. Variant rs3774959 associates Disease ulcerative colitis. Variant rs4065985 associates Disease ulcerative colitis. Variant rs6667605 associates Disease ulcerative colitis. Variant rs6088765 associates Disease ulcerative colitis. Variant rs9271366 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TNFRSF6B. Variant rs9263739 associates Disease ulcerative colitis. Variant rs5771069 associates Disease ulcerative colitis. Variant HLA-DRB1*0103 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL10RB. Variant rs4676406 associates Disease ulcerative colitis. Variant rs55838263 associates Disease ulcerative colitis. Variant rs6920220 associates Disease ulcerative colitis. Variant rs11676348 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene CFB. Variant rs9268923 associates Disease ulcerative colitis. Variant rs13003464 associates Disease ulcerative colitis. Variant rs10761659 associates Disease ulcerative colitis. Variant rs4656958 associates Disease ulcerative colitis. Variant rs12568930 associates Disease ulcerative colitis. Variant rs2858829 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SLC39A11. Variant rs3766606 associates Disease ulcerative colitis. Variant rs80174646 associates Disease ulcerative colitis. Variant rs4151657 associates Disease ulcerative colitis. Variant rs1830610 associates Disease ulcerative colitis. Variant rs2836878 associates Disease ulcerative colitis. Variant rs2201841 associates Disease ulcerative colitis. Variant rs12942547 associates Disease ulcerative colitis. Variant rs13048533 associates Disease ulcerative colitis. Variant rs12946510 associates Disease ulcerative colitis. Variant rs6871626 associates Disease ulcerative colitis. Variant rs4817983 associates Disease ulcerative colitis. Variant rs11083840 associates Disease ulcerative colitis. Variant rs4676408 associates Disease ulcerative colitis. Variant rs56167332 associates Disease ulcerative colitis. Variant rs117506082 associates Disease ulcerative colitis. Variant rs11190140 associates Disease ulcerative colitis. Variant rs145568234 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene FCGR2A. Variant rs16940186 associates Disease ulcerative colitis. Variant rs2838519 associates Disease ulcerative colitis. Variant rs11150589 associates Disease ulcerative colitis. Variant rs17207986 associates Disease ulcerative colitis. Variant rs661054 associates Disease ulcerative colitis. Variant rs886774 associates Disease ulcerative colitis. Variant rs3197999 associates Disease ulcerative colitis. Variant rs12261843 associates Disease ulcerative colitis. Variant rs2155219 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TCF4. Variant rs4845604 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL37. Disease ulcerative colitis associates Gene INTS11. Variant rs2111485 associates Disease ulcerative colitis. Gene MIR4284 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene OSMR. Disease Crohn's disease associates Gene TNFSF15. Variant rs116392568 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL10. Disease Crohn's disease associates Gene IL10RA. Variant rs61959448 associates Disease Crohn's disease. Variant rs9525625 associates Disease Crohn's disease. Disease Crohn's disease associates Gene NFATC1. Variant rs61839660 associates Disease Crohn's disease. Variant rs11681525 associates Disease Crohn's disease. Variant rs6556412 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Variant rs516246 associates Disease Crohn's disease. Variant rs76181804 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs4871611 associates Disease Crohn's disease. Variant rs7423615 associates Disease Crohn's disease. Variant rs12663356 associates Disease Crohn's disease. Variant rs5763767 associates Disease Crohn's disease. Variant rs4263839 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs4266763 associates Disease Crohn's disease. Variant rs314313 associates Disease Crohn's disease. Variant rs3766606 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL23R. Variant rs4821544 associates Disease Crohn's disease. Variant rs4976646 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs6651252 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL1RL1. Variant rs2188962 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs395157 associates Disease Crohn's disease. Variant rs6545946 associates Disease Crohn's disease. Variant rs13126505 associates Disease Crohn's disease. Variant rs56167332 associates Disease Crohn's disease. Variant rs4409764 associates Disease Crohn's disease. Variant rs78898421 associates Disease Crohn's disease. Variant rs13361189 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs6738825 associates Disease Crohn's disease. Variant rs736289 associates Disease Crohn's disease. Variant rs12946510 associates Disease Crohn's disease. Variant rs151314883 associates Disease Crohn's disease. Variant rs13333062 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL18RAP. Variant rs11581607 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL12B. Variant rs6856616 associates Disease Crohn's disease. Variant rs9358372 associates Disease Crohn's disease. Variant rs762421 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs423674 associates Disease Crohn's disease. Variant rs7438704 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs751728 associates Disease Crohn's disease. Variant rs7869487 associates Disease Crohn's disease. Variant rs7765379 associates Disease Crohn's disease. Variant rs1432296 associates Disease Crohn's disease. Variant rs71624119 associates Disease Crohn's disease. Variant rs7954567 associates Disease Crohn's disease. Variant rs11195128 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs7517810 associates Disease Crohn's disease. Variant rs4077515 associates Disease Crohn's disease. Variant rs56116661 associates Disease Crohn's disease. Variant rs6503695 associates Disease Crohn's disease. Variant rs6738490 associates Disease Crohn's disease. Variant rs6863411 associates Disease Crohn's disease. Variant rs140068907 associates Disease Crohn's disease. Variant rs13003464 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs3810936 associates Disease Crohn's disease. Variant rs1260326 associates Disease Crohn's disease. \\nQuestion: Out of the given list, which Gene is associated with ulcerative colitis and Crohn's disease. Given list is: ZFHX3, OPTN, EML4, IL23R, STN1\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990129.1273847}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f1a674b9fe4e2568617ddd66aab6f1e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f1a674b9fe4e2568617ddd66aab6f1e/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6f1a674b9fe4e2568617ddd66aab6f1e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6fbea67517f0780b91407c05fafa77a6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6fbea67517f0780b91407c05fafa77a6/metadata.json new file mode 100644 index 0000000..9d8f3d7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6fbea67517f0780b91407c05fafa77a6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6036391258239746, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and opiate dependence. Given list is: HYKK, HOXD3, HLA-DQA1, ADGRV1, BRCA2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048186.9830763}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6fbea67517f0780b91407c05fafa77a6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6fbea67517f0780b91407c05fafa77a6/output.pkl Binary files differnew file mode 100644 index 0000000..e3e7bb9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6fbea67517f0780b91407c05fafa77a6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6feccc2c94c68e344ff4fb218fea2498/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6feccc2c94c68e344ff4fb218fea2498/metadata.json new file mode 100644 index 0000000..1b032d9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6feccc2c94c68e344ff4fb218fea2498/metadata.json @@ -0,0 +1 @@ +{"duration": 1.391258955001831, "input_args": {"instruction": "'Context: Variant rs2631367 associates Disease inflammatory bowel disease 5.. Variant rs1559403654 associates Disease Fanconi anemia complementation group D2. Variant rs560600678 associates Disease Fanconi anemia complementation group D2. Variant rs548255173 associates Disease Fanconi anemia complementation group D2. Variant rs1168183069 associates Disease Fanconi anemia complementation group D2. Variant rs566518051 associates Disease Fanconi anemia complementation group D2. Variant rs1168778380 associates Disease Fanconi anemia complementation group D2. Variant rs145170666 associates Disease Fanconi anemia complementation group D2. Variant rs17032386 associates Disease Fanconi anemia complementation group D2. Variant rs146509445 associates Disease Fanconi anemia complementation group D2. Variant rs146496253 associates Disease Fanconi anemia complementation group D2. Variant rs145099733 associates Disease Fanconi anemia complementation group D2. Variant rs765378218 associates Disease Fanconi anemia complementation group D2. Variant rs56041034 associates Disease Fanconi anemia complementation group D2. Variant rs1553608812 associates Disease Fanconi anemia complementation group D2. Variant rs760246372 associates Disease Fanconi anemia complementation group D2. Variant rs752376206 associates Disease Fanconi anemia complementation group D2. Variant rs370459744 associates Disease Fanconi anemia complementation group D2. Variant rs36070315 associates Disease Fanconi anemia complementation group D2. Variant rs17032283 associates Disease Fanconi anemia complementation group D2. Variant rs145522204 associates Disease Fanconi anemia complementation group D2. Variant rs760823688 associates Disease Fanconi anemia complementation group D2. Variant rs460965 associates Disease Fanconi anemia complementation group D2. Variant rs1447943740 associates Disease Fanconi anemia complementation group D2. Variant rs574054963 associates Disease Fanconi anemia complementation group D2. Variant rs1374735618 associates Disease Fanconi anemia complementation group D2. Variant rs540249462 associates Disease Fanconi anemia complementation group D2. Variant rs55973240 associates Disease Fanconi anemia complementation group D2. Variant rs55980657 associates Disease Fanconi anemia complementation group D2. Variant rs7615646 associates Disease Fanconi anemia complementation group D2. Variant rs757782326 associates Disease Fanconi anemia complementation group D2. Variant rs112317511 associates Disease inflammatory bowel disease 28. Variant rs535662153 associates Disease inflammatory bowel disease 28. Variant rs368287711 associates Disease inflammatory bowel disease 28. Variant rs1447881842 associates Disease inflammatory bowel disease 28. Variant rs143538561 associates Disease inflammatory bowel disease 28. Variant rs527246428 associates Disease inflammatory bowel disease 28. Variant rs377174523 associates Disease inflammatory bowel disease 28. Variant rs1031597162 associates Disease inflammatory bowel disease 28. Variant rs62636561 associates Disease inflammatory bowel disease 28. Variant rs144476761 associates Disease inflammatory bowel disease 28. Variant rs143719655 associates Disease inflammatory bowel disease 28. Variant rs1033025102 associates Disease inflammatory bowel disease 28.. Variant rs940437717 associates Disease inflammatory bowel disease 28. Variant rs56384274 associates Disease inflammatory bowel disease 28. Variant rs564148493 associates Disease inflammatory bowel disease 28. Variant rs370255112 associates Disease inflammatory bowel disease 28. Variant rs56008037 associates Disease inflammatory bowel disease 28. Variant rs560128585 associates Disease inflammatory bowel disease 28. Variant rs55721363 associates Disease inflammatory bowel disease 28. Variant rs4252311 associates Disease inflammatory bowel disease 28. Variant rs376956484 associates Disease inflammatory bowel disease 28. Variant rs746663189 associates Disease inflammatory bowel disease 28. Variant rs35465632 associates Disease inflammatory bowel disease 28. Variant rs56143179 associates Disease inflammatory bowel disease 28. Variant rs550348490 associates Disease inflammatory bowel disease 28. Variant rs145605428 associates Disease inflammatory bowel disease 28. Variant rs143645358 associates Disease inflammatory bowel disease 28. Variant rs570165681 associates Disease inflammatory bowel disease 28. Variant rs117423374 associates Disease inflammatory bowel disease 28. Variant rs139576148 associates Disease inflammatory bowel disease 28. Variant rs1057520982 associates Disease Fanconi anemia complementation group N.. Variant rs144944814 associates Disease Fanconi anemia complementation group N. Variant rs1060502804 associates Disease Fanconi anemia complementation group N. Variant rs757567654 associates Disease Fanconi anemia complementation group N. Variant rs1060499823 associates Disease Fanconi anemia complementation group N. Variant rs62625271 associates Disease Fanconi anemia complementation group N. Variant rs145788619 associates Disease Fanconi anemia complementation group N. Variant rs115759702 associates Disease Fanconi anemia complementation group N. Variant rs876659160 associates Disease Fanconi anemia complementation group N. Variant rs45551636 associates Disease Fanconi anemia complementation group N. Variant rs567706422 associates Disease Fanconi anemia complementation group N. Variant rs377626805 associates Disease Fanconi anemia complementation group N. Variant rs141458731 associates Disease Fanconi anemia complementation group N. Variant rs1555461809 associates Disease Fanconi anemia complementation group N. Variant rs587781824 associates Disease Fanconi anemia complementation group N. Variant rs371149159 associates Disease Fanconi anemia complementation group N. Variant rs57605939 associates Disease Fanconi anemia complementation group N. Variant rs45568339 associates Disease Fanconi anemia complementation group N. Variant rs1060502748 associates Disease Fanconi anemia complementation group N. Variant rs373321719 associates Disease Fanconi anemia complementation group N. Variant rs756519825 associates Disease Fanconi anemia complementation group N. Variant rs587776416 associates Disease Fanconi anemia complementation group N. Variant rs867817029 associates Disease Fanconi anemia complementation group N. Variant rs587782443 associates Disease Fanconi anemia complementation group N. Variant rs45612837 associates Disease Fanconi anemia complementation group N. Variant rs142103232 associates Disease Fanconi anemia complementation group N. Variant rs587776428 associates Disease Fanconi anemia complementation group N. Variant rs746872839 associates Disease Fanconi anemia complementation group N. Variant rs587776410 associates Disease Fanconi anemia complementation group N. Variant rs141749524 associates Disease Fanconi anemia complementation group N. Variant rs576279166 associates Disease Fanconi anemia complementation group D1. Variant rs56390402 associates Disease Fanconi anemia complementation group D1. Variant rs1566260827 associates Disease Fanconi anemia complementation group D1. Variant rs81002827 associates Disease Fanconi anemia complementation group D1. Variant rs1555286294 associates Disease Fanconi anemia complementation group D1. Variant rs56328701 associates Disease Fanconi anemia complementation group D1. Variant rs1555281106 associates Disease Fanconi anemia complementation group D1. Variant rs1555279969 associates Disease Fanconi anemia complementation group D1. Variant rs11571769 associates Disease Fanconi anemia complementation group D1. Variant rs11571746 associates Disease Fanconi anemia complementation group D1. Variant rs81002899 associates Disease Fanconi anemia complementation group D1. Variant rs56019712 associates Disease Fanconi anemia complementation group D1. Variant rs56121817 associates Disease Fanconi anemia complementation group D1. Variant rs56172926 associates Disease Fanconi anemia complementation group D1. Variant rs56003538 associates Disease Fanconi anemia complementation group D1. Variant rs11571659 associates Disease Fanconi anemia complementation group D1. Variant rs863224590 associates Disease Fanconi anemia complementation group D1. Variant rs81002897 associates Disease Fanconi anemia complementation group D1. Variant rs1036870835 associates Disease Fanconi anemia complementation group D1. Variant rs11571836 associates Disease Fanconi anemia complementation group D1. Variant rs11571747 associates Disease Fanconi anemia complementation group D1. Variant rs1566232471 associates Disease Fanconi anemia complementation group D1. Variant rs371454630 associates Disease Fanconi anemia complementation group D1. Variant rs34355306 associates Disease Fanconi anemia complementation group D1. Variant rs9534262 associates Disease Fanconi anemia complementation group D1. Variant rs11571654 associates Disease Fanconi anemia complementation group D1. Variant rs572993583 associates Disease Fanconi anemia complementation group D1. Variant rs587782568 associates Disease Fanconi anemia complementation group D1. Variant rs11571653 associates Disease Fanconi anemia complementation group D1. Variant rs587782519 associates Disease Fanconi anemia complementation group D1. \\nQuestion: Out of the given list, which Gene is associated with malaria and duodenal ulcer. Given list is: TP53, ABO, HLA-DPA1, ADGRV1, GNE'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048561.4883392}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6feccc2c94c68e344ff4fb218fea2498/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6feccc2c94c68e344ff4fb218fea2498/output.pkl Binary files differnew file mode 100644 index 0000000..6abbced --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/6feccc2c94c68e344ff4fb218fea2498/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7077af80113d1a360616351e12947d61/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7077af80113d1a360616351e12947d61/metadata.json new file mode 100644 index 0000000..75dcbbd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7077af80113d1a360616351e12947d61/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6337792873382568, "input_args": {"instruction": "'Context: Variant chr9:5073770 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PNPLA6. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CYP7B1. Variant rs4374383 associates Disease liver cirrhosis. Variant rs2896019 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PNPLA3. Variant rs551625260 associates Disease liver cirrhosis. Variant rs28929474 associates Disease liver cirrhosis. Variant rs3819290 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC6A14. Variant rs58542926 associates Disease liver cirrhosis. Variant rs12484700 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PHKG2. Variant rs6834314 associates Disease liver cirrhosis. Variant rs3129943 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene WDR19. Variant rs78069066 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ASAH1. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene KRT18. Disease liver cirrhosis associates Gene PHKA2. Disease liver cirrhosis associates Gene LIPA. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene GBA1. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene ARHGAP31. Disease liver cirrhosis associates Gene ABHD5. Disease liver cirrhosis associates Gene CFAP418. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene GPD1. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene HMOX1. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene SLC11A1. Disease liver cirrhosis associates Gene PHKB. Disease liver cirrhosis associates Gene TXNDC15. Disease liver cirrhosis associates Gene GALT. Disease liver cirrhosis associates Gene PPARG. Disease liver cirrhosis associates Gene APOE. Disease liver cirrhosis associates Gene HDAC9. Disease liver cirrhosis associates Gene YARS1. Disease liver cirrhosis associates Gene KIF12. Disease liver cirrhosis associates Gene ALDOB. Disease liver cirrhosis associates Gene DHCR7. Disease liver cirrhosis associates Gene B9D2. Variant rs2642438 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene DYNC2H1. Disease liver cirrhosis associates Gene CLDN1. Disease liver cirrhosis associates Gene AKR1D1. Disease liver cirrhosis associates Gene B9D1. Variant rs738409 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene GLRX5. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene KRT8. Disease liver cirrhosis associates Gene NHP2. Variant rs16851720 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene KIF3B. Disease liver cirrhosis associates Gene PKHD1. Disease liver cirrhosis associates Gene CCDC28B. Disease liver cirrhosis associates Gene PTRH2. Disease liver cirrhosis associates Gene PARN. Disease liver cirrhosis associates Gene DGUOK. Disease liver cirrhosis associates Gene ACADVL. Disease liver cirrhosis associates Gene DYNC2I1. Gene MIR181A2 associates Disease liver cirrhosis. Gene MIR196A2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HFE. Disease liver cirrhosis associates Gene NEK1. Disease liver cirrhosis associates Gene ABCB11. Disease liver cirrhosis associates Gene SLC40A1. Gene MIR181B1 associates Disease liver cirrhosis. Variant chr17:66085081 associates Disease non-alcoholic fatty liver disease. Variant chr3:47294950 associates Disease non-alcoholic fatty liver disease. Variant rs2070669 associates Disease non-alcoholic fatty liver disease. Variant rs12359178 associates Disease non-alcoholic fatty liver disease. Variant chr1:89255345 associates Disease non-alcoholic fatty liver disease. Variant chr7:130438531 associates Disease non-alcoholic fatty liver disease. Variant rs11653507 associates Disease non-alcoholic fatty liver disease. Variant rs624698 associates Disease non-alcoholic fatty liver disease. Variant chr10:114779557 associates Disease non-alcoholic fatty liver disease. Variant rs9604818 associates Disease non-alcoholic fatty liver disease. Variant rs1169289 associates Disease non-alcoholic fatty liver disease. Variant rs4604455 associates Disease non-alcoholic fatty liver disease. Variant rs9922619 associates Disease non-alcoholic fatty liver disease. Variant rs4819649 associates Disease non-alcoholic fatty liver disease. Variant rs1260326 associates Disease non-alcoholic fatty liver disease. Variant rs6006469 associates Disease non-alcoholic fatty liver disease. Variant rs4940694 associates Disease non-alcoholic fatty liver disease. Variant rs2954030 associates Disease non-alcoholic fatty liver disease. Variant rs1263151 associates Disease non-alcoholic fatty liver disease. Variant rs598747 associates Disease non-alcoholic fatty liver disease. Variant rs2713538 associates Disease non-alcoholic fatty liver disease. Variant rs1260327 associates Disease non-alcoholic fatty liver disease. Variant rs2274685 associates Disease non-alcoholic fatty liver disease. Variant rs12454712 associates Disease non-alcoholic fatty liver disease. Variant rs2385114 associates Disease non-alcoholic fatty liver disease. Variant rs2279162 associates Disease non-alcoholic fatty liver disease. Variant rs492602 associates Disease non-alcoholic fatty liver disease. Variant rs1248890 associates Disease non-alcoholic fatty liver disease. Variant rs6583826 associates Disease non-alcoholic fatty liver disease. Variant rs2896019 associates Disease non-alcoholic fatty liver disease. Variant rs6994124 associates Disease non-alcoholic fatty liver disease. Variant rs6802898 associates Disease non-alcoholic fatty liver disease. Variant rs1441764 associates Disease non-alcoholic fatty liver disease. Variant rs17321515 associates Disease non-alcoholic fatty liver disease. Disease non-alcoholic fatty liver disease associates Gene PNPLA3. Variant rs2980854 associates Disease non-alcoholic fatty liver disease. Variant rs1044531 associates Disease non-alcoholic fatty liver disease. Variant rs58489806 associates Disease non-alcoholic fatty liver disease. Disease non-alcoholic fatty liver disease associates Gene GGT1. Variant rs9908820 associates Disease non-alcoholic fatty liver disease. Variant rs4835021 associates Disease non-alcoholic fatty liver disease. Variant rs5021727 associates Disease non-alcoholic fatty liver disease. Variant rs9271406 associates Disease non-alcoholic fatty liver disease. Variant rs9272699 associates Disease non-alcoholic fatty liver disease. Variant rs10401969 associates Disease non-alcoholic fatty liver disease. Variant rs2143571 associates Disease non-alcoholic fatty liver disease. Variant rs10108430 associates Disease non-alcoholic fatty liver disease. \\nQuestion: Out of the given list, which Gene is associated with liver cirrhosis and non-alcoholic fatty liver disease. Given list is: HYKK, PLA2G6, ADH1B, PNPLA3, RGS14'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989707.3778496}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7077af80113d1a360616351e12947d61/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7077af80113d1a360616351e12947d61/output.pkl Binary files differnew file mode 100644 index 0000000..f32c41b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7077af80113d1a360616351e12947d61/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/70b21eea32c7c947b708e5ce1b32f4f4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/70b21eea32c7c947b708e5ce1b32f4f4/metadata.json new file mode 100644 index 0000000..5fe79ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/70b21eea32c7c947b708e5ce1b32f4f4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5745444297790527, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriatic arthritis and allergic rhinitis. Given list is: RP1, STAT4, C5AR1, TENM2, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048751.161082}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/70b21eea32c7c947b708e5ce1b32f4f4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/70b21eea32c7c947b708e5ce1b32f4f4/output.pkl Binary files differnew file mode 100644 index 0000000..23b995d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/70b21eea32c7c947b708e5ce1b32f4f4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7154568e012cf2a0a3b3b4460358cff5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7154568e012cf2a0a3b3b4460358cff5/metadata.json new file mode 100644 index 0000000..95fb421 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7154568e012cf2a0a3b3b4460358cff5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.758544921875, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and lung small cell carcinoma. Given list is: TLR1, SYT14, VAV3, BTN2A1, ADGRV1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048702.2110047}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7154568e012cf2a0a3b3b4460358cff5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7154568e012cf2a0a3b3b4460358cff5/output.pkl Binary files differnew file mode 100644 index 0000000..1bccc1f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7154568e012cf2a0a3b3b4460358cff5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/71757e74f4b48c9aab592dcd246881aa/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/71757e74f4b48c9aab592dcd246881aa/metadata.json new file mode 100644 index 0000000..5fa3d76 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/71757e74f4b48c9aab592dcd246881aa/metadata.json @@ -0,0 +1 @@ +{"duration": 0.61739182472229, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and lung squamous cell carcinoma. Given list is: BRCA2, SULT1B1, SPRED2, CHST11, CCDC33'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048073.8133633}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/71757e74f4b48c9aab592dcd246881aa/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/71757e74f4b48c9aab592dcd246881aa/output.pkl Binary files differnew file mode 100644 index 0000000..b245574 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/71757e74f4b48c9aab592dcd246881aa/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/717c43ab3847db6f7c621b8eb351e30b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/717c43ab3847db6f7c621b8eb351e30b/metadata.json new file mode 100644 index 0000000..216fe67 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/717c43ab3847db6f7c621b8eb351e30b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6006219387054443, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with cutaneous lupus erythematosus and collagenous colitis. Given list is: rs4939827, rs3197999, rs3739821, rs2187668, rs1975197'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048993.637144}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/717c43ab3847db6f7c621b8eb351e30b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/717c43ab3847db6f7c621b8eb351e30b/output.pkl Binary files differnew file mode 100644 index 0000000..713c298 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/717c43ab3847db6f7c621b8eb351e30b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/723b55316c926584e5c2bff0aeda312a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/723b55316c926584e5c2bff0aeda312a/metadata.json new file mode 100644 index 0000000..ddcde32 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/723b55316c926584e5c2bff0aeda312a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5226001739501953, "input_args": {"instruction": "\"Context: Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene IL1A. Disease ankylosing spondylitis associates Gene TNFRSF1A. Disease ankylosing spondylitis associates Gene IL23R. Disease ankylosing spondylitis associates Gene IL27. Disease ankylosing spondylitis associates Gene IL1R2. Disease ankylosing spondylitis associates Gene SAA2. Disease ankylosing spondylitis associates Gene IL1R1. Disease ankylosing spondylitis associates Gene IL12B. Variant rs1250550 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA1. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs1801274 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL6R. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs4676410 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs17192932 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Variant rs8070463 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL17A. Variant HLA-B*2702 associates Disease ankylosing spondylitis. Variant HLA-B*2705 associates Disease ankylosing spondylitis. Variant rs11249215 associates Disease ankylosing spondylitis. Variant rs13001372 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene FCGR2A. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs2910686 associates Disease ankylosing spondylitis. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs1128905 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs12141575 associates Disease ankylosing spondylitis. Variant rs11190133 associates Disease ankylosing spondylitis. Variant rs27529 associates Disease ankylosing spondylitis. Gene MIR10B associates Disease ankylosing spondylitis. Variant rs10865331 associates Disease ankylosing spondylitis. Variant rs10045403 associates Disease ankylosing spondylitis. Variant rs378108 associates Disease ankylosing spondylitis. Variant rs117486637 associates Disease ankylosing spondylitis. Disease Crohn's disease associates Gene SLC22A23. Variant rs12521868 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs4263839 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Disease Crohn's disease associates Gene SLC22A4. Disease Crohn's disease associates Gene TNFSF15. Disease Crohn's disease associates Gene ANKRD55. Disease Crohn's disease associates Gene SLC22A5. Variant rs1432296 associates Disease Crohn's disease. Variant rs2266959 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL18RAP. Variant rs11879191 associates Disease Crohn's disease. Variant rs9271060 associates Disease Crohn's disease. Variant rs113973829 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs1998598 associates Disease Crohn's disease. Variant rs13333062 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs2945412 associates Disease Crohn's disease. Variant rs13204048 associates Disease Crohn's disease. Variant rs116392568 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs2823286 associates Disease Crohn's disease. Disease Crohn's disease associates Gene NFATC1. Variant rs9286879 associates Disease Crohn's disease. Variant rs12422544 associates Disease Crohn's disease. Variant rs2155219 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs4821544 associates Disease Crohn's disease. Variant rs293526 associates Disease Crohn's disease. Variant rs28449958 associates Disease Crohn's disease. Variant rs11175593 associates Disease Crohn's disease. Variant rs9525625 associates Disease Crohn's disease. Variant rs6651252 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs2836878 associates Disease Crohn's disease. Variant rs11681525 associates Disease Crohn's disease. Variant rs212389 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs212388 associates Disease Crohn's disease. Variant rs4957294 associates Disease Crohn's disease. Variant rs78898421 associates Disease Crohn's disease. Variant rs9358372 associates Disease Crohn's disease. Variant rs4266763 associates Disease Crohn's disease. Variant rs1250546 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs140068907 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs395157 associates Disease Crohn's disease. Variant rs1250544 associates Disease Crohn's disease. Disease Crohn's disease associates Gene PTPN22. Variant rs2062305 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Variant rs11742570 associates Disease Crohn's disease. Variant rs3851228 associates Disease Crohn's disease. Variant rs1250550 associates Disease Crohn's disease. Variant rs13300218 associates Disease Crohn's disease. Variant rs148319899 associates Disease Crohn's disease. Variant rs1893217 associates Disease Crohn's disease. Disease Crohn's disease associates Gene SNX20. Variant rs11584383 associates Disease Crohn's disease. Variant rs2930047 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs3197999 associates Disease Crohn's disease. Variant rs6659932 associates Disease Crohn's disease. \\nQuestion: Out of the given list, which Gene is associated with ankylosing spondylitis and Crohn's disease. Given list is: IL23R, HLA-DQB1, TNRC18, EYA2, SLC2A9\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989890.0529633}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/723b55316c926584e5c2bff0aeda312a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/723b55316c926584e5c2bff0aeda312a/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/723b55316c926584e5c2bff0aeda312a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/72432402e94b06c17daf283abd7ae0a5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/72432402e94b06c17daf283abd7ae0a5/metadata.json new file mode 100644 index 0000000..67eb491 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/72432402e94b06c17daf283abd7ae0a5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.56681227684021, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myositis and rheumatoid arthritis. Given list is: C9, RORA, TERT, HLA-B, PTPN22'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990135.7215405}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/72432402e94b06c17daf283abd7ae0a5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/72432402e94b06c17daf283abd7ae0a5/output.pkl Binary files differnew file mode 100644 index 0000000..0480aa9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/72432402e94b06c17daf283abd7ae0a5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7261a13e1e1bd273b8c7c1a4c1886006/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7261a13e1e1bd273b8c7c1a4c1886006/metadata.json new file mode 100644 index 0000000..a07186d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7261a13e1e1bd273b8c7c1a4c1886006/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6314690113067627, "input_args": {"instruction": "'Context: Variant rs199894206 associates Disease rheumatoid arthritis. Variant rs3184504 associates Disease rheumatoid arthritis. Variant rs502919 associates Disease rheumatoid arthritis. Variant rs4452313 associates Disease rheumatoid arthritis. Variant rs3806624 associates Disease rheumatoid arthritis. Variant rs5987194 associates Disease rheumatoid arthritis. Variant rs4409785 associates Disease rheumatoid arthritis. Variant rs35156883 associates Disease rheumatoid arthritis. Variant rs59578717 associates Disease rheumatoid arthritis. Variant rs11889341 associates Disease rheumatoid arthritis. Variant rs149041927 associates Disease rheumatoid arthritis. Variant rs4602043 associates Disease rheumatoid arthritis. Variant rs3134883 associates Disease rheumatoid arthritis. Variant rs9943599 associates Disease rheumatoid arthritis. Variant rs58107865 associates Disease rheumatoid arthritis. Variant rs2745106 associates Disease rheumatoid arthritis. Variant rs35139284 associates Disease rheumatoid arthritis. Variant rs5757628 associates Disease rheumatoid arthritis. Variant rs142469968 associates Disease rheumatoid arthritis. Variant rs34695944 associates Disease rheumatoid arthritis. Variant rs595158 associates Disease rheumatoid arthritis. Variant rs624988 associates Disease rheumatoid arthritis. Variant rs4305317 associates Disease rheumatoid arthritis. Variant rs11574914 associates Disease rheumatoid arthritis. Variant rs2076615 associates Disease rheumatoid arthritis. Variant rs4602367 associates Disease rheumatoid arthritis. Variant rs11933540 associates Disease rheumatoid arthritis. Variant rs1943199 associates Disease rheumatoid arthritis. Disease rheumatoid arthritis associates Gene MAPK14. Variant rs187786174 associates Disease rheumatoid arthritis. Variant rs4936059 associates Disease rheumatoid arthritis. Variant rs1355208 associates Disease rheumatoid arthritis. Variant rs61828284 associates Disease rheumatoid arthritis. Variant rs111469885 associates Disease rheumatoid arthritis. Variant rs1830035 associates Disease rheumatoid arthritis. Variant rs9979383 associates Disease rheumatoid arthritis. Variant rs2075876 associates Disease rheumatoid arthritis. Variant rs12467084 associates Disease rheumatoid arthritis. Variant rs113066392 associates Disease rheumatoid arthritis. Variant rs12413578 associates Disease rheumatoid arthritis. Variant rs56139217 associates Disease rheumatoid arthritis. Disease rheumatoid arthritis associates Gene PRKCQ. Variant rs34030880 associates Disease rheumatoid arthritis. Variant rs8043085 associates Disease rheumatoid arthritis. Variant rs35576264 associates Disease rheumatoid arthritis. Variant rs3761847 associates Disease rheumatoid arthritis. Variant rs35677470 associates Disease rheumatoid arthritis. Variant rs59466457 associates Disease rheumatoid arthritis. Variant rs35926684 associates Disease rheumatoid arthritis. Variant rs6859219 associates Disease rheumatoid arthritis. Variant rs1557787212 associates Disease rheumatoid arthritis. Variant rs56095903 associates Disease rheumatoid arthritis. Variant rs9268839 associates Disease rheumatoid arthritis. Variant rs5754100 associates Disease rheumatoid arthritis. Variant rs2203098 associates Disease rheumatoid arthritis. Variant rs1854853 associates Disease rheumatoid arthritis. Variant rs149253747 associates Disease rheumatoid arthritis. Variant rs4963581 associates Disease rheumatoid arthritis. Variant rs660895 associates Disease rheumatoid arthritis. Variant rs11915402 associates Disease rheumatoid arthritis. Variant rs3807306 associates Disease rheumatoid arthritis. Variant rs4728142 associates Disease rheumatoid arthritis. Variant rs3781094 associates Disease rheumatoid arthritis. Variant rs9939427 associates Disease rheumatoid arthritis. Variant rs13192471 associates Disease rheumatoid arthritis. Gene MIR4634 associates Disease rheumatoid arthritis. Variant rs6715284 associates Disease rheumatoid arthritis. Variant rs874040 associates Disease rheumatoid arthritis. Variant rs1893592 associates Disease rheumatoid arthritis. Variant rs3792876 associates Disease rheumatoid arthritis. Variant rs10795791 associates Disease rheumatoid arthritis. Variant rs4853458 associates Disease rheumatoid arthritis. Variant rs8133843 associates Disease rheumatoid arthritis. Variant rs11868709 associates Disease rheumatoid arthritis. Variant rs10797431 associates Disease rheumatoid arthritis. Disease myositis associates Gene TNFRSF1A. Disease myositis associates Gene PTPN22. Disease myositis associates Gene IL23R. Disease myositis associates Gene IRF4. Disease myositis associates Gene HLA-B. Disease myositis associates Gene TLR4. Disease myositis associates Gene IRAK1. Variant rs116662199 associates Disease myositis. Disease myositis associates Gene IL12A. Variant rs116088953 associates Disease myositis. Disease myositis associates Gene FOXP3. Disease myositis associates Gene STAT4. Variant rs114388793 associates Disease myositis. Disease myositis associates Gene IFNGR1. Variant rs115146037 associates Disease myositis. Disease myositis associates Gene IL10. Variant rs2476601 associates Disease myositis. Variant rs114771815 associates Disease myositis. Variant rs3130614 associates Disease myositis. Variant rs114012716 associates Disease myositis. Disease myositis associates Gene COX1. Disease myositis associates Gene COX3. Variant DRB1*15 associates Disease myositis. Variant rs188088967 associates Disease myositis. Variant rs114042950 associates Disease myositis. Variant DRB1*15:01 associates Disease myositis. Disease myositis associates Gene STING1. Disease myositis associates Gene HNRNPA2B1. Variant rs114050967 associates Disease myositis. Disease myositis associates Gene MATR3. Variant DRB1*03:01 associates Disease myositis. Variant rs115902351 associates Disease myositis. Disease myositis associates Gene PSTPIP1. Variant DRB1*03 associates Disease myositis. Variant rs9267488 associates Disease myositis. Disease myositis associates Gene FAS. Disease myositis associates Gene C4A. Disease myositis associates Gene ATP6V1G2. Disease myositis associates Gene MEFV. Disease myositis associates Gene CCR1. Disease myositis associates Gene KLRC4. Disease myositis associates Gene CAPN3. Disease myositis associates Gene TREX1. Variant rs3129843 associates Disease myositis. Disease myositis presents Symptom Arthralgia. \\nQuestion: Out of the given list, which Gene is associated with rheumatoid arthritis and myositis. Given list is: STAT3, BARD1, PTPN22, PRKN, C5AR1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989892.3264887}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7261a13e1e1bd273b8c7c1a4c1886006/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7261a13e1e1bd273b8c7c1a4c1886006/output.pkl Binary files differnew file mode 100644 index 0000000..48070ec --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7261a13e1e1bd273b8c7c1a4c1886006/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/728d36922dca127cba28f647093ec85c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/728d36922dca127cba28f647093ec85c/metadata.json new file mode 100644 index 0000000..71513ef --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/728d36922dca127cba28f647093ec85c/metadata.json @@ -0,0 +1 @@ +{"duration": 10.622446298599243, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and immunoglobulin alpha deficiency. Given list is: HLA-DQA1, HLA-DQB1, UCK2, PLA2R1, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989643.8976114}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/728d36922dca127cba28f647093ec85c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/728d36922dca127cba28f647093ec85c/output.pkl Binary files differnew file mode 100644 index 0000000..503546c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/728d36922dca127cba28f647093ec85c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/733f652bcc8aa0a5e0ee500c459bdc2f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/733f652bcc8aa0a5e0ee500c459bdc2f/metadata.json new file mode 100644 index 0000000..2343f6e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/733f652bcc8aa0a5e0ee500c459bdc2f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5405032634735107, "input_args": {"instruction": "'Context: Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-G. Disease cervix carcinoma associates Gene HLA-DQA2. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Gene MIR520H associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene MUC22. Gene MIR4262 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Gene MIR26B associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Gene MIR1246 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. Gene MIR590 associates Disease cervix carcinoma. Gene MIR503 associates Disease cervix carcinoma. Gene MIR424 associates Disease cervix carcinoma. Gene MIR429 associates Disease cervix carcinoma. Gene MIR485 associates Disease cervix carcinoma. Gene MIR502 associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Gene MIR16-2 associates Disease cervix carcinoma. Gene MIR200A associates Disease cervix carcinoma. Gene MIR433 associates Disease cervix carcinoma. Gene MIR106B associates Disease cervix carcinoma. Gene MIR200B associates Disease cervix carcinoma. Gene MIR421 associates Disease cervix carcinoma. Gene MIR362 associates Disease cervix carcinoma. Gene MIR494 associates Disease cervix carcinoma. Gene MIR361 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Gene MIR146A associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene TNXB. Gene MIR1290 associates Disease cervix carcinoma. Gene MIR218-1 associates Disease cervix carcinoma. Gene MIR543 associates Disease cervix carcinoma. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene TCF19. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. Variant rs1265159 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene FOXP3. Disease membranous glomerulonephritis associates Gene EGFL8. Variant rs3134945 associates Disease membranous glomerulonephritis. Variant rs9271573 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene BTNL2. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs2233956 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene TSBP1. Variant rs3134792 associates Disease membranous glomerulonephritis. Variant rs7750641 associates Disease membranous glomerulonephritis. Variant rs2187668 associates Disease membranous glomerulonephritis. Variant rs3130618 associates Disease membranous glomerulonephritis. Variant rs3096697 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene RNF5. Disease membranous glomerulonephritis associates Gene NFKB1. Variant rs3129939 associates Disease membranous glomerulonephritis. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and membranous glomerulonephritis. Given list is: HLA-DQA1, WNT4, TNIP1, CAPN14, DTNB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048138.7947032}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/733f652bcc8aa0a5e0ee500c459bdc2f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/733f652bcc8aa0a5e0ee500c459bdc2f/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/733f652bcc8aa0a5e0ee500c459bdc2f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/73c3dd397c0cf6acd0d3db1e880a90a0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/73c3dd397c0cf6acd0d3db1e880a90a0/metadata.json new file mode 100644 index 0000000..0fcbcca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/73c3dd397c0cf6acd0d3db1e880a90a0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6729567050933838, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cutaneous lupus erythematosus and membranous glomerulonephritis. Given list is: JAK2, IL6, HLA-DQA1, HNF1B, ZEB2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048663.007701}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/73c3dd397c0cf6acd0d3db1e880a90a0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/73c3dd397c0cf6acd0d3db1e880a90a0/output.pkl Binary files differnew file mode 100644 index 0000000..cbaf5f5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/73c3dd397c0cf6acd0d3db1e880a90a0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/749639c66eec8c150a730b9c04aff91f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/749639c66eec8c150a730b9c04aff91f/metadata.json new file mode 100644 index 0000000..87d2ec4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/749639c66eec8c150a730b9c04aff91f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6885290145874023, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriasis and Takayasu's arteritis. Given list is: SHTN1, HLA-B, SLC14A2, BTBD9, DTNB\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988408.5467467}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/749639c66eec8c150a730b9c04aff91f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/749639c66eec8c150a730b9c04aff91f/output.pkl Binary files differnew file mode 100644 index 0000000..5ba9708 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/749639c66eec8c150a730b9c04aff91f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75332b86c0562e3cf7d7af78d68e5b64/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75332b86c0562e3cf7d7af78d68e5b64/metadata.json new file mode 100644 index 0000000..7565f0d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75332b86c0562e3cf7d7af78d68e5b64/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6548280715942383, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and lung adenocarcinoma. Given list is: SLC17A4, STAT6, HLA-DQB1, TERT, PRX'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047837.6842806}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75332b86c0562e3cf7d7af78d68e5b64/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75332b86c0562e3cf7d7af78d68e5b64/output.pkl Binary files differnew file mode 100644 index 0000000..7ad695d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75332b86c0562e3cf7d7af78d68e5b64/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75657fba4318ed78c3a0c5971ad73a5c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75657fba4318ed78c3a0c5971ad73a5c/metadata.json new file mode 100644 index 0000000..c41b2da --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75657fba4318ed78c3a0c5971ad73a5c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5086355209350586, "input_args": {"instruction": "'Context: Disease central nervous system cancer associates Gene TREM2. Disease central nervous system cancer associates Gene TERT. Variant rs2853676 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Variant rs59060240 associates Disease central nervous system cancer. Variant rs1801591 associates Disease central nervous system cancer. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SMARCB1. Variant rs1412829 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene MMP23B. Variant rs2157719 associates Disease central nervous system cancer. Variant rs1920116 associates Disease central nervous system cancer. Variant rs75061358 associates Disease central nervous system cancer. Variant rs12230172 associates Disease central nervous system cancer. Variant rs35850753 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene MSH6. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SMARCA4. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene SMARCE1. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM106B. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene MSH3. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene TMEM127. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene NSD1. Disease central nervous system cancer associates Gene WT1. Disease central nervous system cancer associates Gene ZSWIM6. Disease central nervous system cancer associates Gene MSH2. Disease central nervous system cancer associates Gene POT1. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene BRCA2. Variant rs10069690 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene APC2. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene APC. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene OFD1. Variant rs2236507 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PRDM16. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene PMS2. Disease central nervous system cancer associates Gene TMEM216. Disease central nervous system cancer associates Gene PMS1. Disease central nervous system cancer associates Gene GPR161. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RUNX1. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene TUBB. Disease central nervous system cancer associates Gene BRD4. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FGF8. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene VPS16. Disease central nervous system cancer associates Gene PDGFRB. Disease central nervous system cancer associates Gene RET. Disease central nervous system cancer associates Gene DMPK. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene MLH1. Disease central nervous system cancer associates Gene SPEN. Disease central nervous system cancer associates Gene MN1. Variant rs4809324 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene CDKN1A. Disease myeloproliferative neoplasm associates Gene TERT. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Gene MIR15B associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TET2. Disease myeloproliferative neoplasm associates Gene ATM. Gene MIR433 associates Disease myeloproliferative neoplasm. Variant rs1057519752 associates Disease myeloproliferative neoplasm. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and myeloproliferative neoplasm. Given list is: TERT, NOD2, HLA-DQB1, SAMM50, SFRP4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048000.6563184}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75657fba4318ed78c3a0c5971ad73a5c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75657fba4318ed78c3a0c5971ad73a5c/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75657fba4318ed78c3a0c5971ad73a5c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7575cbd856db05f069b2bd328af9793d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7575cbd856db05f069b2bd328af9793d/metadata.json new file mode 100644 index 0000000..5df42a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7575cbd856db05f069b2bd328af9793d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5038599967956543, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with dilated cardiomyopathy and hypertrophic cardiomyopathy. Given list is: TLR1, IL23R, HLA-B, MYH7, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048126.0302455}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7575cbd856db05f069b2bd328af9793d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7575cbd856db05f069b2bd328af9793d/output.pkl Binary files differnew file mode 100644 index 0000000..324f650 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7575cbd856db05f069b2bd328af9793d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75cd9115172df996c8402ab40c0f0941/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75cd9115172df996c8402ab40c0f0941/metadata.json new file mode 100644 index 0000000..73f8da8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75cd9115172df996c8402ab40c0f0941/metadata.json @@ -0,0 +1 @@ +{"duration": 0.549616813659668, "input_args": {"instruction": "'Context: Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene NFE2L2. Disease immunoglobulin alpha deficiency associates Gene CASP8. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Variant rs11299600 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Disease immunoglobulin alpha deficiency associates Gene TNFRSF11A. Disease immunoglobulin alpha deficiency associates Gene NFKB2. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene ZNF341. Variant rs1244181 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene PLCG2. Disease immunoglobulin alpha deficiency associates Gene PTPRC. Disease immunoglobulin alpha deficiency associates Gene TCN2. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene CTLA4. Disease immunoglobulin alpha deficiency associates Gene IVNS1ABP. Disease immunoglobulin alpha deficiency associates Gene BTK. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene ATP6AP1. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Gene MIR485 associates Disease cutaneous lupus erythematosus. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. \\nQuestion: Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and cutaneous lupus erythematosus. Given list is: PLA2R1, DTNB, FER, HLA-DQA1, PINX1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989822.9123635}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75cd9115172df996c8402ab40c0f0941/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75cd9115172df996c8402ab40c0f0941/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/75cd9115172df996c8402ab40c0f0941/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76571e5c18095aac44066878d3280b84/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76571e5c18095aac44066878d3280b84/metadata.json new file mode 100644 index 0000000..d5bac58 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76571e5c18095aac44066878d3280b84/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6380178928375244, "input_args": {"instruction": "'Context: Variant rs3803662 associates Disease male breast cancer. Variant rs9397437 associates Disease male breast cancer. Variant rs1314913 associates Disease male breast cancer.. Variant rs554219 associates Disease male breast cancer. Variant rs3757322 associates Disease male breast cancer. Variant rs9383938 associates Disease male breast cancer. Variant rs78540526 associates Disease male breast cancer. Disease male breast cancer associates Gene CCDC170. Disease male breast cancer associates Gene ESR1. Disease male breast cancer associates Gene RAD51B. Disease ontology identifier of male breast cancer is DOID:1614. Disease male breast cancer resembles Disease breast ductal carcinoma. Disease male breast cancer resembles Disease invasive lobular carcinoma. Variant rs17350191 associates Disease breast carcinoma. Variant rs535965616 associates Disease breast carcinoma. Variant rs555607708 associates Disease breast carcinoma. Variant chr5:58365353 associates Disease breast carcinoma. Variant rs587776650 associates Disease breast carcinoma. Variant chr1:149025528 associates Disease breast carcinoma. Variant rs12655019 associates Disease breast carcinoma. Variant rs5995881 associates Disease breast carcinoma. Variant rs4971059 associates Disease breast carcinoma. Variant rs139770721 associates Disease breast carcinoma. Variant rs878853813 associates Disease breast carcinoma. Variant rs886040319 associates Disease breast carcinoma. Variant rs587782011 associates Disease breast carcinoma. Variant chr12:115835798 associates Disease breast carcinoma. Variant rs59867004 associates Disease breast carcinoma. Variant rs4951011 associates Disease breast carcinoma. Variant rs55821517 associates Disease breast carcinoma. Variant rs569369507 associates Disease breast carcinoma. Variant chr13:32866927 associates Disease breast carcinoma. Variant rs1555461727 associates Disease breast carcinoma. Variant rs146817970 associates Disease breast carcinoma. Variant rs587782849 associates Disease breast carcinoma. Variant rs62485509 associates Disease breast carcinoma. Variant chr17:44759766 associates Disease breast carcinoma. Variant rs11652463 associates Disease breast carcinoma. Variant rs1057518875 associates Disease breast carcinoma. Variant rs55811218 associates Disease breast carcinoma. Variant rs4980386 associates Disease breast carcinoma. Variant rs11693806 associates Disease breast carcinoma. Variant chr9:136151579 associates Disease breast carcinoma. Variant rs368466538 associates Disease breast carcinoma. Variant chr12:28452497 associates Disease breast carcinoma. Variant chr12:120832146 associates Disease breast carcinoma. Variant rs886040950 associates Disease breast carcinoma. Variant rs11852999 associates Disease breast carcinoma. Variant rs4849887 associates Disease breast carcinoma. Variant rs587782652 associates Disease breast carcinoma. Variant rs11055888 associates Disease breast carcinoma. Variant rs145928162 associates Disease breast carcinoma. Variant chr17:44184819 associates Disease breast carcinoma. Variant rs377153250 associates Disease breast carcinoma. Variant rs587783057 associates Disease breast carcinoma. Variant rs6677545 associates Disease breast carcinoma. Variant rs13281615 associates Disease breast carcinoma. Variant rs6752414 associates Disease breast carcinoma. Variant rs587778541 associates Disease breast carcinoma. Variant chr12:85009437 associates Disease breast carcinoma. Variant chr12:96027759 associates Disease breast carcinoma. Variant rs139424826 associates Disease breast carcinoma. Variant rs11552449 associates Disease breast carcinoma. Variant rs12458099 associates Disease breast carcinoma. Variant rs58058861 associates Disease breast carcinoma. Variant rs4149909 associates Disease breast carcinoma. Variant chr11:65601650 associates Disease breast carcinoma. Variant rs876658804 associates Disease breast carcinoma. Variant rs3769821 associates Disease breast carcinoma. Variant chr10:123340431 associates Disease breast carcinoma. Variant rs146699004 associates Disease breast carcinoma. Variant rs377595512 associates Disease breast carcinoma. Variant rs878853614 associates Disease breast carcinoma. Variant chr17:44252468 associates Disease breast carcinoma. Variant rs116095464 associates Disease breast carcinoma. Variant rs13186320 associates Disease breast carcinoma. Variant rs786202520 associates Disease breast carcinoma. Variant rs397507419 associates Disease breast carcinoma. Variant rs66823261 associates Disease breast carcinoma. Variant rs111730030 associates Disease breast carcinoma. Variant rs60778117 associates Disease breast carcinoma. Variant rs4848599 associates Disease breast carcinoma. Variant rs9257809 associates Disease breast carcinoma. Variant rs1555580883 associates Disease breast carcinoma. Variant rs4973768 associates Disease breast carcinoma. Variant rs587781633 associates Disease breast carcinoma. Variant rs61754966 associates Disease breast carcinoma. Variant chr12:28569325 associates Disease breast carcinoma. \\nQuestion: Out of the given list, which Variant is associated with male breast cancer and breast carcinoma. Given list is: rs3803662, rs34574566, rs1278769, rs16948876, rs10488631'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048872.6576326}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76571e5c18095aac44066878d3280b84/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76571e5c18095aac44066878d3280b84/output.pkl Binary files differnew file mode 100644 index 0000000..1c1b8ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76571e5c18095aac44066878d3280b84/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76bee71250a0129a9a8a3009c5345ad3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76bee71250a0129a9a8a3009c5345ad3/metadata.json new file mode 100644 index 0000000..f0315ce --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76bee71250a0129a9a8a3009c5345ad3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.632317304611206, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and central nervous system cancer. Given list is: WNT4, TERT, VAV3, ADH1B, GATA3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047831.9810448}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76bee71250a0129a9a8a3009c5345ad3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76bee71250a0129a9a8a3009c5345ad3/output.pkl Binary files differnew file mode 100644 index 0000000..4f2d1a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76bee71250a0129a9a8a3009c5345ad3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76e3e2c58931128ab87fcf4eb9fcb079/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76e3e2c58931128ab87fcf4eb9fcb079/metadata.json new file mode 100644 index 0000000..8500d54 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76e3e2c58931128ab87fcf4eb9fcb079/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5331325531005859, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene SLC27A4. Variant rs143021546 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-B. Variant rs34004019 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs1140310 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF11A. Variant rs13277355 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC15A2. Variant rs11644510 associates Disease allergic rhinitis. Variant rs11169225 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQB1. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene SMAD3. Variant rs1998266 associates Disease allergic rhinitis. Variant rs13405815 associates Disease allergic rhinitis. Variant rs12509403 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs16858573 associates Disease allergic rhinitis. Variant rs1438673 associates Disease allergic rhinitis.. Variant rs138050288 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Disease allergic rhinitis associates Gene ITGB8. Variant rs35350651 associates Disease allergic rhinitis. Variant rs34210653 associates Disease allergic rhinitis. Variant rs130071 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Variant rs12952581 associates Disease allergic rhinitis. Variant rs12623041 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene TNFSF4. Variant rs59183580 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1RL1. Variant rs491087 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Variant rs13020553 associates Disease allergic rhinitis. Variant rs17033015 associates Disease allergic rhinitis. Variant rs12343737 associates Disease allergic rhinitis. Variant rs35597970 associates Disease allergic rhinitis. Variant rs11539209 associates Disease allergic rhinitis. Variant rs1143633 associates Disease allergic rhinitis. Variant rs2139049 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Variant rs13414647 associates Disease allergic rhinitis. Variant rs12365699 associates Disease allergic rhinitis. Variant rs111371454 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene LPP. Variant rs17513503 associates Disease allergic rhinitis. Variant rs1344674 associates Disease allergic rhinitis. Variant rs2070901 associates Disease allergic rhinitis. Variant rs12939457 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene COL15A1. Variant rs4771332 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Variant rs13185930 associates Disease allergic rhinitis. Variant rs45599938 associates Disease allergic rhinitis. Variant rs6830371 associates Disease allergic rhinitis. Variant rs509399 associates Disease allergic rhinitis. Variant rs9271701 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SULT1A1. Variant chr6:32631116 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene PLCL1. Disease allergic rhinitis associates Gene ATXN2. Variant rs2190097 associates Disease allergic rhinitis. Variant rs6738825 associates Disease allergic rhinitis. Variant rs34290285 associates Disease allergic rhinitis. Variant rs2070902 associates Disease allergic rhinitis. Disease scleroderma associates Gene CLCNKB. Disease scleroderma associates Gene BLK. Disease scleroderma associates Gene IRF5. Disease scleroderma associates Gene LBR. Disease scleroderma associates Gene SLC12A3. Disease scleroderma associates Gene TNFSF4. Disease scleroderma associates Gene POLD1. Disease scleroderma associates Gene PTPN22. Disease scleroderma associates Gene CRYAB. Disease scleroderma associates Gene HFE. Disease scleroderma associates Gene STAT4. Disease scleroderma associates Gene WRN. Disease scleroderma associates Gene SLC29A3. Disease scleroderma associates Gene PAH. Disease scleroderma associates Gene LMNA. Disease scleroderma associates Gene BANK1. Disease scleroderma associates Gene UROS. Disease scleroderma associates Gene UROD. Disease scleroderma associates Gene LEMD3. Disease scleroderma presents Symptom Oral Manifestations. Disease scleroderma presents Symptom Eye Manifestations. Disease scleroderma presents Symptom Ophthalmoplegia. Disease facial dermatosis resembles Disease scleroderma. Disease scleroderma localizes Anatomy skin of body. Disease limited scleroderma resembles Disease scleroderma. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and limited scleroderma. Given list is: SNCA, HLA-DQB1, TLR1, EPDR1, SHTN1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048253.4841833}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76e3e2c58931128ab87fcf4eb9fcb079/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76e3e2c58931128ab87fcf4eb9fcb079/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/76e3e2c58931128ab87fcf4eb9fcb079/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77151c7c86a1e981d8df48099c462a94/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77151c7c86a1e981d8df48099c462a94/metadata.json new file mode 100644 index 0000000..fe40b51 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77151c7c86a1e981d8df48099c462a94/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8899374008178711, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with gastric fundus cancer and duodenal ulcer. Given list is: rs11759064, rs975730, rs1150757, rs2294008, rs7453920'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049047.15301}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77151c7c86a1e981d8df48099c462a94/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77151c7c86a1e981d8df48099c462a94/output.pkl Binary files differnew file mode 100644 index 0000000..05125ba --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77151c7c86a1e981d8df48099c462a94/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/773afcddaacec70d818ea3787a3b1d6a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/773afcddaacec70d818ea3787a3b1d6a/metadata.json new file mode 100644 index 0000000..b2df7bf --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/773afcddaacec70d818ea3787a3b1d6a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5594232082366943, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oropharynx cancer and oral cavity cancer. Given list is: MYBPC3, KIF1B, DGKK, HLA-DQB1, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990066.9132233}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/773afcddaacec70d818ea3787a3b1d6a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/773afcddaacec70d818ea3787a3b1d6a/output.pkl Binary files differnew file mode 100644 index 0000000..fbc10a2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/773afcddaacec70d818ea3787a3b1d6a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77e77277ce6ce28e3d88bd1c505bbb93/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77e77277ce6ce28e3d88bd1c505bbb93/metadata.json new file mode 100644 index 0000000..43d1aa8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77e77277ce6ce28e3d88bd1c505bbb93/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7217001914978027, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with herpes zoster and psoriatic arthritis. Given list is: HLA-B, ADGRV1, CPS1, SULT1B1, ATG5'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047765.7723029}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77e77277ce6ce28e3d88bd1c505bbb93/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77e77277ce6ce28e3d88bd1c505bbb93/output.pkl Binary files differnew file mode 100644 index 0000000..566aafe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/77e77277ce6ce28e3d88bd1c505bbb93/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/78feae1aa222a568a055e76be80e0e4d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/78feae1aa222a568a055e76be80e0e4d/metadata.json new file mode 100644 index 0000000..857acbc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/78feae1aa222a568a055e76be80e0e4d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5725142955780029, "input_args": {"instruction": "'Context: Variant rs543259829 associates Disease pancreatic carcinoma. Variant rs879254095 associates Disease pancreatic carcinoma. Variant rs1555162597 associates Disease pancreatic carcinoma. Variant rs60579835 associates Disease pancreatic carcinoma. Variant rs121913049 associates Disease pancreatic carcinoma. Variant rs1568205026 associates Disease pancreatic carcinoma. Variant rs41293511 associates Disease pancreatic carcinoma. Variant rs121434220 associates Disease pancreatic carcinoma. Variant rs886059211 associates Disease pancreatic carcinoma. Variant rs121913529 associates Disease pancreatic carcinoma. Variant rs397518442 associates Disease pancreatic carcinoma. Variant rs9581943 associates Disease pancreatic carcinoma. Variant rs139569694 associates Disease pancreatic carcinoma. Variant rs121912661 associates Disease pancreatic carcinoma. Variant rs121434388 associates Disease pancreatic carcinoma. Variant rs41286296 associates Disease pancreatic carcinoma. Variant rs515726123 associates Disease pancreatic carcinoma. Variant rs539739051 associates Disease pancreatic carcinoma. Variant rs139770721 associates Disease pancreatic carcinoma. Variant rs397518443 associates Disease pancreatic carcinoma. Variant rs886059208 associates Disease pancreatic carcinoma. Variant rs9543325 associates Disease pancreatic carcinoma. Variant rs2255280 associates Disease pancreatic carcinoma. Variant rs886038068 associates Disease pancreatic carcinoma. Variant rs397514495 associates Disease pancreatic carcinoma. Variant rs17688601 associates Disease pancreatic carcinoma. Variant rs796761323 associates Disease pancreatic carcinoma. Variant rs6971499 associates Disease pancreatic carcinoma. Variant rs9854771 associates Disease pancreatic carcinoma. Variant rs587776650 associates Disease pancreatic carcinoma. Variant rs121912579 associates Disease pancreatic carcinoma. Variant rs4795218 associates Disease pancreatic carcinoma. Variant rs121912578 associates Disease pancreatic carcinoma. Variant rs81002812 associates Disease pancreatic carcinoma. Variant rs1486134 associates Disease pancreatic carcinoma. Variant rs2941471 associates Disease pancreatic carcinoma. Variant rs1064794204 associates Disease pancreatic carcinoma. Variant rs121913322 associates Disease pancreatic carcinoma. Variant rs121912576 associates Disease pancreatic carcinoma. Variant rs9554197 associates Disease pancreatic carcinoma. Variant chr14:104000802 associates Disease pancreatic carcinoma. Variant rs587781633 associates Disease pancreatic carcinoma. Variant rs587780192 associates Disease pancreatic carcinoma. Variant rs121912577 associates Disease pancreatic carcinoma. Variant rs555607708 associates Disease pancreatic carcinoma. Variant rs147621330 associates Disease pancreatic carcinoma. Variant rs66562280 associates Disease pancreatic carcinoma. Variant rs80358972 associates Disease pancreatic carcinoma. Variant rs16986825 associates Disease pancreatic carcinoma. Variant rs760551339 associates Disease pancreatic carcinoma. Variant rs13303010 associates Disease pancreatic carcinoma. Variant rs1553986519 associates Disease pancreatic carcinoma. Variant rs398064261 associates Disease pancreatic carcinoma. Disease malaria associates Gene MMP26. Disease malaria associates Gene ATP2B4. Variant rs116423146 associates Disease malaria. Disease malaria associates Gene OR51B5. Disease malaria associates Gene ABO. Variant rs567544458 associates Disease malaria. Variant rs4951377 associates Disease malaria. Variant rs57032711 associates Disease malaria. Variant rs8176722 associates Disease malaria. Variant rs8176719 associates Disease malaria. Disease malaria associates Gene OR51F1. Disease malaria associates Gene HBG2. Variant rs10900585 associates Disease malaria. Variant rs12788102 associates Disease malaria. Variant rs186873296 associates Disease malaria. Disease malaria associates Gene HBE1. Disease malaria associates Gene MVB12B. Disease malaria associates Gene HBB. Variant rs372091 associates Disease malaria. Variant rs11036238 associates Disease malaria. Variant rs334 associates Disease malaria. Disease malaria associates Gene FREM3. Disease malaria localizes Anatomy digestive system. Disease malaria localizes Anatomy adrenal gland. Disease malaria localizes Anatomy immune system. Disease malaria presents Symptom Fever of Unknown Origin. Disease malaria localizes Anatomy umbilical cord blood. Disease malaria localizes Anatomy hematopoietic system. Disease malaria localizes Anatomy saliva-secreting gland. Compound Proguanil treats Disease malaria. \\nQuestion: Out of the given list, which Gene is associated with pancreatic carcinoma and malaria. Given list is: HLA-DQA1, CACNA1S, KAT2B, ABO, ATXN2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048134.506841}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/78feae1aa222a568a055e76be80e0e4d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/78feae1aa222a568a055e76be80e0e4d/output.pkl Binary files differnew file mode 100644 index 0000000..893e414 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/78feae1aa222a568a055e76be80e0e4d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a3a3573b8adb78faafb7888e6e79b90/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a3a3573b8adb78faafb7888e6e79b90/metadata.json new file mode 100644 index 0000000..ec01bfc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a3a3573b8adb78faafb7888e6e79b90/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5353059768676758, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with endometrial cancer and sclerosing cholangitis. Given list is: ATXN2, FBN1, STAT3, ADGRG6, ATG5'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048808.8419428}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a3a3573b8adb78faafb7888e6e79b90/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a3a3573b8adb78faafb7888e6e79b90/output.pkl Binary files differnew file mode 100644 index 0000000..24f9380 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a3a3573b8adb78faafb7888e6e79b90/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a48284cb7041981cfbb415d156c383f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a48284cb7041981cfbb415d156c383f/metadata.json new file mode 100644 index 0000000..030c52b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a48284cb7041981cfbb415d156c383f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7033991813659668, "input_args": {"instruction": "'Context: Variant rs116423146 associates Disease malaria. Variant rs8176722 associates Disease malaria. Disease malaria associates Gene MMP26. Variant rs8176719 associates Disease malaria. Variant rs567544458 associates Disease malaria. Disease malaria associates Gene ABO. Variant rs4951377 associates Disease malaria. Disease malaria associates Gene OR51B5. Disease malaria associates Gene HBG2. Variant rs57032711 associates Disease malaria. Disease malaria associates Gene OR51F1. Disease malaria associates Gene MVB12B. Variant rs12788102 associates Disease malaria. Variant rs186873296 associates Disease malaria. Disease malaria associates Gene ATP2B4. Variant rs11036238 associates Disease malaria. Variant rs372091 associates Disease malaria. Variant rs10900585 associates Disease malaria. Disease malaria associates Gene HBE1. Disease malaria associates Gene HBB. Variant rs334 associates Disease malaria. Disease malaria associates Gene FREM3. Disease ontology identifier of malaria is DOID:12365. Disease malaria presents Symptom Diarrhea. Disease malaria presents Symptom Fever of Unknown Origin. Disease malaria presents Symptom Hypergammaglobulinemia. Compound Duomectin treats Disease malaria. Disease Plasmodium falciparum malaria isa Disease malaria. Disease malaria localizes Anatomy digestive system. Disease malaria presents Symptom Diarrhea, Infantile. Gene MIR1246 associates Disease Plasmodium falciparum malaria. Gene MIR3613 associates Disease Plasmodium falciparum malaria. Gene MIR6780B associates Disease Plasmodium falciparum malaria. Gene MIR6126 associates Disease Plasmodium falciparum malaria. Gene MIR3135B associates Disease Plasmodium falciparum malaria. Disease Plasmodium falciparum malaria presents Symptom Fever of Unknown Origin. Disease ontology identifier of Plasmodium falciparum malaria is DOID:14067. Disease Plasmodium falciparum malaria presents Symptom Eye Hemorrhage. Disease Plasmodium falciparum malaria presents Symptom Hemoglobinuria. Disease Plasmodium falciparum malaria presents Symptom Travel-Related Illness. Disease Plasmodium falciparum malaria presents Symptom Cerebellar Ataxia. Disease Plasmodium falciparum malaria isa Disease malaria. Disease Plasmodium falciparum malaria localizes Anatomy digestive system. Disease Plasmodium falciparum malaria presents Symptom Purpura Fulminans. Gene MIR146A associates Disease cerebral malaria. Gene MIR142 associates Disease cerebral malaria. Gene MIR155 associates Disease cerebral malaria. Gene MIR150 associates Disease cerebral malaria. Gene MIR19A associates Disease cerebral malaria. Gene MIR223 associates Disease cerebral malaria. Gene MIR205 associates Disease cerebral malaria. Gene MIR215 associates Disease cerebral malaria. Gene MIR193B associates Disease cerebral malaria. Gene MIRLET7I associates Disease cerebral malaria. Disease ontology identifier of cerebral malaria is DOID:14069. Disease ontology identifier of Plasmodium vivax malaria is DOID:12978. Disease Plasmodium vivax malaria presents Symptom Fever of Unknown Origin. Disease Plasmodium vivax malaria presents Symptom Travel-Related Illness. Disease Plasmodium vivax malaria resembles Disease glucosephosphate dehydrogenase deficiency. Disease Plasmodium vivax malaria presents Symptom Jaundice. Disease Plasmodium vivax malaria presents Symptom Fever. Compound Amodiaquine treats Disease Plasmodium vivax malaria. Disease Plasmodium vivax malaria isa Disease malaria. Disease GM2 gangliosidosis associates Gene GM2A. Disease GM2 gangliosidosis associates Gene HEXA. Disease GM2 gangliosidosis associates Gene HEXB. Disease ontology identifier of GM2 gangliosidosis, AB variant is DOID:4795. \\nQuestion: Out of the given list, which Gene is associated with malaria and duodenal ulcer. Given list is: TP53, ABO, HLA-DPA1, ADGRV1, GNE'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047633.8056986}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a48284cb7041981cfbb415d156c383f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a48284cb7041981cfbb415d156c383f/output.pkl Binary files differnew file mode 100644 index 0000000..893e414 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7a48284cb7041981cfbb415d156c383f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ab170aee29af8f9006cfbd69b083a67/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ab170aee29af8f9006cfbd69b083a67/metadata.json new file mode 100644 index 0000000..5850c47 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ab170aee29af8f9006cfbd69b083a67/metadata.json @@ -0,0 +1 @@ +{"duration": 0.743788480758667, "input_args": {"instruction": "\"Context: Disease Takayasu's arteritis associates Gene HLA-DQB2. Disease Takayasu's arteritis associates Gene HLA-B. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant HLAB*5201 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DOB. Variant rs17193507 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRT4. Variant rs9266745 associates Disease Takayasu's arteritis. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Variant rs1713450 associates Disease Takayasu's arteritis. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Variant rs2322599 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene ABHD16A. Disease Takayasu's arteritis associates Gene RNF5. Disease Takayasu's arteritis associates Gene VWA7. Disease Takayasu's arteritis associates Gene PTK2B. Variant rs12526858 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Variant rs12524487 associates Disease Takayasu's arteritis. Variant rs12524487\\xa0 associates Disease Takayasu's arteritis. Variant chr6:31570670 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Variant HLAB*1501 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs117298325 associates Disease Takayasu's arteritis. Disease allergic rhinitis associates Gene HLA-B. Variant rs11680788 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQA1. Variant rs11644510 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs891058 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Variant rs11671925 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs111371454 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ABO. Disease allergic rhinitis associates Gene TNFSF4. Variant rs5743618 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SULT1A1. Disease allergic rhinitis associates Gene TNC. Variant rs301806 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Variant rs2988277 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs17133587 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene NOS3. Variant rs16858573 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DPB1. Variant rs148505069 associates Disease allergic rhinitis. Variant rs34210653 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RUNX1. Variant rs5743604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene NFATC2. Variant rs4381563 associates Disease allergic rhinitis. Variant rs10501149 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DMB. Disease allergic rhinitis associates Gene RTF1. Variant rs981625 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF11A. Variant rs9986945 associates Disease allergic rhinitis. Variant rs12952581 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Variant rs4916533 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ACTR1A. Variant rs13277355 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IRF1. Variant rs62404084 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Variant rs13405815 associates Disease allergic rhinitis. Variant rs6479828 associates Disease allergic rhinitis. Variant rs6738825 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Variant rs34290285 associates Disease allergic rhinitis. Variant rs950881 associates Disease allergic rhinitis. Variant rs34004019 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs9276796 associates Disease allergic rhinitis. Variant rs1214598 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Variant rs13395467 associates Disease allergic rhinitis. Variant rs112401631 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Variant rs9282864 associates Disease allergic rhinitis. Variant rs11169225 associates Disease allergic rhinitis. Variant rs61907713 associates Disease allergic rhinitis. Variant rs61192126 associates Disease allergic rhinitis. Variant rs28690449 associates Disease allergic rhinitis. Variant rs61815559 associates Disease allergic rhinitis. Variant rs1140310 associates Disease allergic rhinitis. Variant rs9273373 associates Disease allergic rhinitis. Variant rs9297768 associates Disease allergic rhinitis. Variant rs10468514 associates Disease allergic rhinitis. Variant rs479844 associates Disease allergic rhinitis. \\nQuestion: Out of the given list, which Gene is associated with Takayasu's arteritis and allergic rhinitis. Given list is: HLA-DQB2, CRTC1, FAM13A, TNRC6B, HLA-B\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989760.0471513}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ab170aee29af8f9006cfbd69b083a67/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ab170aee29af8f9006cfbd69b083a67/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ab170aee29af8f9006cfbd69b083a67/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7b2c2c9dcaab8044e24f48b0808e1644/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7b2c2c9dcaab8044e24f48b0808e1644/metadata.json new file mode 100644 index 0000000..6845bb4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7b2c2c9dcaab8044e24f48b0808e1644/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4879624843597412, "input_args": {"instruction": "'Context: Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Disease cutaneous lupus erythematosus associates Gene TRIM39-RPP21. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Disease cutaneous lupus erythematosus associates Gene PSORS1C1. Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-DQA2. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-G. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene PAX8. Variant rs9272143 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Variant rs3131631 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene TNXB. Variant rs139337062 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Gene MIR590 associates Disease cervix carcinoma. Gene MIR10A associates Disease cervix carcinoma. Gene MIR520H associates Disease cervix carcinoma. Gene MIR15B associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Gene MIR15A associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs9272050 associates Disease cervix carcinoma. Gene MIR361 associates Disease cervix carcinoma. Gene MIR381 associates Disease cervix carcinoma. Gene MIR16-2 associates Disease cervix carcinoma. Variant rs3130218 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Variant rs10175462 associates Disease cervix carcinoma. Gene MIR503 associates Disease cervix carcinoma. Gene MIR106B associates Disease cervix carcinoma. \\nQuestion: Out of the given list, which Gene is associated with cutaneous lupus erythematosus and cervix carcinoma. Given list is: PRX, CDK8, HIP1, HLA-DQA1, RAD51B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047941.9490006}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7b2c2c9dcaab8044e24f48b0808e1644/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7b2c2c9dcaab8044e24f48b0808e1644/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7b2c2c9dcaab8044e24f48b0808e1644/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ba947339a464e8c057b89ddd086757f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ba947339a464e8c057b89ddd086757f/metadata.json new file mode 100644 index 0000000..f1c2c58 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ba947339a464e8c057b89ddd086757f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4764552116394043, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with duodenal ulcer and malaria. Given list is: IGF1R, HLA-DQA1, USHBP1, ABO, GTF2I'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047767.1838374}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ba947339a464e8c057b89ddd086757f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ba947339a464e8c057b89ddd086757f/output.pkl Binary files differnew file mode 100644 index 0000000..6a83ff8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ba947339a464e8c057b89ddd086757f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c06a32d549a6d2e6c9e001d2ea0d8a8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c06a32d549a6d2e6c9e001d2ea0d8a8/metadata.json new file mode 100644 index 0000000..18827ca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c06a32d549a6d2e6c9e001d2ea0d8a8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5466232299804688, "input_args": {"instruction": "'Context: Disease estrogen-receptor negative breast cancer associates Gene TERT. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs149934734 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs4849887 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TCF7L2. Disease estrogen-receptor negative breast cancer associates Gene RAD51B. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs67931591 associates Disease estrogen-receptor negative breast cancer. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene BRCA2. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs10069690 associates Disease estrogen-receptor negative breast cancer. Variant rs12710696 associates Disease estrogen-receptor negative breast cancer.. Variant rs143521471 associates Disease estrogen-receptor negative breast cancer. Variant rs9397437 associates Disease estrogen-receptor negative breast cancer. Variant rs616488 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene TP53. Variant rs2363956 associates Disease triple-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and triple-receptor negative breast cancer. Given list is: TRAF3IP2, HBB, TERT, HOXD3, ATP2B1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048671.892433}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c06a32d549a6d2e6c9e001d2ea0d8a8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c06a32d549a6d2e6c9e001d2ea0d8a8/output.pkl Binary files differnew file mode 100644 index 0000000..7cd4115 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c06a32d549a6d2e6c9e001d2ea0d8a8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c738ed45478cf0de9b71d08fc787be2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c738ed45478cf0de9b71d08fc787be2/metadata.json new file mode 100644 index 0000000..5c7c0b5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c738ed45478cf0de9b71d08fc787be2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5496299266815186, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with uterine fibroid and triple-receptor negative breast cancer. Given list is: rs1709393, rs3118470, rs1107345, rs78378222, rs1122171'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048934.391092}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c738ed45478cf0de9b71d08fc787be2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c738ed45478cf0de9b71d08fc787be2/output.pkl Binary files differnew file mode 100644 index 0000000..cd9f015 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7c738ed45478cf0de9b71d08fc787be2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7cb4681d6b4d967a52a531d04579ee5a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7cb4681d6b4d967a52a531d04579ee5a/metadata.json new file mode 100644 index 0000000..b884ee9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7cb4681d6b4d967a52a531d04579ee5a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5598726272583008, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung small cell carcinoma and cervix carcinoma. Given list is: TERT, ADGRV1, PHGDH, CACNA1D, TFAP2B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989527.0409336}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7cb4681d6b4d967a52a531d04579ee5a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7cb4681d6b4d967a52a531d04579ee5a/output.pkl Binary files differnew file mode 100644 index 0000000..d95deec --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7cb4681d6b4d967a52a531d04579ee5a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7dd8e0d3a2745581c3e60b0cd93eb708/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7dd8e0d3a2745581c3e60b0cd93eb708/metadata.json new file mode 100644 index 0000000..e9aac57 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7dd8e0d3a2745581c3e60b0cd93eb708/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46581578254699707, "input_args": {"instruction": "'Context: Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs3094067 associates Disease cutaneous lupus erythematosus. Variant rs1233491 associates Disease cutaneous lupus erythematosus. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Gene MIR122 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene SYNPR. \\nQuestion: Out of the given list, which Variant is associated with cutaneous lupus erythematosus and autoimmune hepatitis. Given list is: rs1937450, rs2187668, rs6010620, rs2231142, rs10455872'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048992.981744}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7dd8e0d3a2745581c3e60b0cd93eb708/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7dd8e0d3a2745581c3e60b0cd93eb708/output.pkl Binary files differnew file mode 100644 index 0000000..ca7489c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7dd8e0d3a2745581c3e60b0cd93eb708/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e2035741a45c99f1a0239f299d6792e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e2035741a45c99f1a0239f299d6792e/metadata.json new file mode 100644 index 0000000..744fd13 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e2035741a45c99f1a0239f299d6792e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7949302196502686, "input_args": {"instruction": "'Context: Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Arthralgia.. Variant rs9461741 associates Disease marginal zone lymphoma. Variant rs1364229 associates Disease marginal zone lymphoma. Variant rs16947122 associates Disease marginal zone lymphoma. Variant rs2922994 associates Disease marginal zone lymphoma. Disease marginal zone lymphoma associates Gene BTNL2. Disease marginal zone lymphoma isa Disease B-cell lymphoma. Disease ontology identifier of marginal zone lymphoma is DOID:0050748. Disease marginal zone lymphoma resembles Disease lymphoplasmacytic lymphoma. Disease marginal zone lymphoma resembles Disease plasma cell neoplasm. Disease marginal zone lymphoma isa Disease leukocyte disease. Disease marginal zone lymphoma resembles Disease autoimmune thyroiditis. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and marginal zone lymphoma. Given list is: HLA-DPA1, VAV3, KALRN, IL12RB2, WNT10A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048307.9996638}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e2035741a45c99f1a0239f299d6792e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e2035741a45c99f1a0239f299d6792e/output.pkl Binary files differnew file mode 100644 index 0000000..eaa3f66 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e2035741a45c99f1a0239f299d6792e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8591aedcbfd7eb923a6d8a506b0ac5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8591aedcbfd7eb923a6d8a506b0ac5/metadata.json new file mode 100644 index 0000000..208e64b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8591aedcbfd7eb923a6d8a506b0ac5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9733710289001465, "input_args": {"instruction": "'Context: Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Variant rs142765674 associates Disease herpes zoster. Variant rs541558502 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT1. Disease herpes zoster associates Gene STAT3. Variant rs147482218 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Disease herpes zoster associates Gene FAM110B. Variant rs17199328 associates Disease herpes zoster. Variant rs117171752 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Disease herpes zoster associates Gene TMC7. Variant rs2574974 associates Disease herpes zoster. Variant rs75640364 associates Disease herpes zoster. Variant rs765885335 associates Disease herpes zoster. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene POLR3A. Disease myelitis resembles Disease herpes zoster. Disease herpes zoster associates Gene LRRC32. Disease herpes zoster presents Symptom Hyperesthesia. Disease herpes zoster presents Symptom Facial Pain. Disease herpes zoster presents Symptom Dysuria. Disease herpes zoster presents Symptom Hypesthesia. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster presents Symptom Acute Pain. Disease herpes zoster localizes Anatomy spinal cord. Disease herpes zoster presents Symptom Facial Paralysis. Disease herpes zoster presents Symptom Neuralgia, Postherpetic. Disease facial dermatosis resembles Disease herpes zoster. Disease herpes zoster isa Disease viral infectious disease. Disease peroneal neuropathy resembles Disease herpes zoster. Compound CX-024414 treats Disease herpes zoster. Disease herpes zoster presents Symptom Neuralgia. Disease herpes zoster presents Symptom Toothache. Disease herpes zoster presents Symptom Paresis. Compound Mycophenolic acid contraindicates Disease herpes zoster. Compound Mycophenolate mofetil contraindicates Disease herpes zoster. Disease herpes zoster localizes Anatomy skin of body. Disease myelodysplastic syndrome associates Gene HAX1. Disease myelodysplastic syndrome associates Gene HSPA9. Disease myelodysplastic syndrome associates Gene CHEK2. Disease myelodysplastic syndrome associates Gene DNAJC21. Variant rs387906631 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene KIT. Disease myelodysplastic syndrome associates Gene CEP57. Disease myelodysplastic syndrome associates Gene DKC1. Variant rs104894229 associates Disease myelodysplastic syndrome.. Gene MIR636 associates Disease myelodysplastic syndrome. Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Variant rs371246226 associates Disease myelodysplastic syndrome. Variant rs769053835 associates Disease myelodysplastic syndrome. Variant rs147001633 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Gene MIR632 associates Disease myelodysplastic syndrome. Variant rs769081887 associates Disease myelodysplastic syndrome. Gene MIR125B1 associates Disease myelodysplastic syndrome. Gene MIR378A associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene PTPN11. Disease myelodysplastic syndrome associates Gene RUNX1. Gene MIR143 associates Disease myelodysplastic syndrome. Variant rs371769427 associates Disease myelodysplastic syndrome. Gene MIR16-1 associates Disease myelodysplastic syndrome. Variant rs752746786 associates Disease myelodysplastic syndrome. Variant rs1576745225 associates Disease myelodysplastic syndrome. Gene MIR16-2 associates Disease myelodysplastic syndrome. Gene MIR1-2 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene PALB2. Disease myelodysplastic syndrome associates Gene BRAF. Variant rs121434595 associates Disease myelodysplastic syndrome. Gene MIR1-1 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene MDM2. Variant rs12203592 associates Disease myelodysplastic syndrome. Gene MIR124-2 associates Disease myelodysplastic syndrome. Gene MIR124-3 associates Disease myelodysplastic syndrome. Variant rs78898975 associates Disease myelodysplastic syndrome. Variant rs121434596 associates Disease myelodysplastic syndrome. Gene MIR146A associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51C. Disease myelodysplastic syndrome associates Gene RPL35A. Variant rs121913250 associates Disease myelodysplastic syndrome. Gene MIR125A associates Disease myelodysplastic syndrome. Gene MIRLET7B associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Gene MIR22 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RPL35. Gene MIRLET7F2 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAF1. Disease myelodysplastic syndrome associates Gene FANCB. Variant rs121913500 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51. Variant rs121913502 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene UBE2T. \\nQuestion: Out of the given list, which Gene is associated with herpes zoster and myelodysplastic syndrome. Given list is: HLA-B, TMEM71, KITLG, PTPRD, AHR'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990014.5191207}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8591aedcbfd7eb923a6d8a506b0ac5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8591aedcbfd7eb923a6d8a506b0ac5/output.pkl Binary files differnew file mode 100644 index 0000000..fc1521b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8591aedcbfd7eb923a6d8a506b0ac5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8fb670e2779224311b623aa9fd2c3e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8fb670e2779224311b623aa9fd2c3e/metadata.json new file mode 100644 index 0000000..4d63f4e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8fb670e2779224311b623aa9fd2c3e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.592031717300415, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with male breast cancer and urticaria. Given list is: BABAM1, RAD51B, PHGDH, ABO, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989528.6305132}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8fb670e2779224311b623aa9fd2c3e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8fb670e2779224311b623aa9fd2c3e/output.pkl Binary files differnew file mode 100644 index 0000000..f12ce1f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7e8fb670e2779224311b623aa9fd2c3e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ef7b254a80d5921da1635effa30261e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ef7b254a80d5921da1635effa30261e/metadata.json new file mode 100644 index 0000000..0039cfb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ef7b254a80d5921da1635effa30261e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5423367023468018, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with aortic stenosis and large artery stroke. Given list is: rs34243448, rs1893592, rs1765871, rs229541, rs10455872'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050481.8276777}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ef7b254a80d5921da1635effa30261e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ef7b254a80d5921da1635effa30261e/output.pkl Binary files differnew file mode 100644 index 0000000..7e20b16 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7ef7b254a80d5921da1635effa30261e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f57eb81fc0735d656e3776ed5584961/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f57eb81fc0735d656e3776ed5584961/metadata.json new file mode 100644 index 0000000..216a54e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f57eb81fc0735d656e3776ed5584961/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4986100196838379, "input_args": {"instruction": "'Context: Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-DQA2. Disease cervix carcinoma associates Gene HLA-G. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs114115115 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene MUC22. Gene MIR381 associates Disease cervix carcinoma. Variant rs115137622 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs9272143 associates Disease cervix carcinoma. Variant rs28752857 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ACACB. Variant rs9277952 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Gene MIR485 associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Disease cervix carcinoma associates Gene EXOC1. Variant rs9272050 associates Disease cervix carcinoma. Gene MIR143 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease collagenous colitis resembles Disease Clostridium difficile colitis. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and collagenous colitis. Given list is: FAM227B, HLA-B, HLA-DQA1, CDKAL1, PNPLA3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048184.9692907}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f57eb81fc0735d656e3776ed5584961/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f57eb81fc0735d656e3776ed5584961/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f57eb81fc0735d656e3776ed5584961/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f9b0515885a19e669b6210e9503b000/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f9b0515885a19e669b6210e9503b000/metadata.json new file mode 100644 index 0000000..d3615d9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f9b0515885a19e669b6210e9503b000/metadata.json @@ -0,0 +1 @@ +{"duration": 0.451641321182251, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease collagenous colitis resembles Disease toxic megacolon. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease autoimmune hepatitis associates Gene HLA-DQB1. Disease autoimmune hepatitis associates Gene HLA-DQA1. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Gene MIR122 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with collagenous colitis and autoimmune hepatitis. Given list is: CACNA1D, HLA-DQA1, AKAP6, MST1, NTM'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047732.3398306}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f9b0515885a19e669b6210e9503b000/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f9b0515885a19e669b6210e9503b000/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/7f9b0515885a19e669b6210e9503b000/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/800c5e1c048211986d1e38de040f013f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/800c5e1c048211986d1e38de040f013f/metadata.json new file mode 100644 index 0000000..28bb91c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/800c5e1c048211986d1e38de040f013f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6025052070617676, "input_args": {"instruction": "'Context: Variant rs387906631 associates Disease myelodysplastic syndrome. Gene MIR636 associates Disease myelodysplastic syndrome. Gene MIR1-2 associates Disease myelodysplastic syndrome. Gene MIR124-2 associates Disease myelodysplastic syndrome. Gene MIR632 associates Disease myelodysplastic syndrome. Gene MIR124-3 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CHEK2. Gene MIR16-1 associates Disease myelodysplastic syndrome. Gene MIR16-2 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene DKC1. Gene MIR1-1 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene DNAJC21. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs147001633 associates Disease myelodysplastic syndrome. Gene MIR143 associates Disease myelodysplastic syndrome. Variant rs1057519960 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAF1. Gene MIR125B1 associates Disease myelodysplastic syndrome. Gene MIR146A associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene MDM2. Variant rs1576745225 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Gene MIR15A associates Disease myelodysplastic syndrome. Variant rs12203592 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs104894229 associates Disease myelodysplastic syndrome.. Disease myelodysplastic syndrome associates Gene PTPN11. Gene MIR145 associates Disease myelodysplastic syndrome. Gene MIR424 associates Disease myelodysplastic syndrome. Gene MIR17 associates Disease myelodysplastic syndrome. Gene MIR22 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene HSPA9. Disease myelodysplastic syndrome associates Gene HAX1. Disease myelodysplastic syndrome associates Gene PALB2. Disease myelodysplastic syndrome associates Gene RUNX1. Gene MIR205 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene BRAF. Gene MIR34A associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CEP57. Disease myelodysplastic syndrome associates Gene RAD51C. Disease myelodysplastic syndrome associates Gene RPS14. Disease myelodysplastic syndrome associates Gene TCIRG1. Disease myelodysplastic syndrome associates Gene XRCC2. Gene MIR125A associates Disease myelodysplastic syndrome. Gene MIR155 associates Disease myelodysplastic syndrome. Gene MIR378A associates Disease myelodysplastic syndrome. Gene MIR181B2 associates Disease myelodysplastic syndrome. Variant rs371769427 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene KIT. Variant rs121913502 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Disease myelodysplastic syndrome associates Gene RAD51. Disease myelodysplastic syndrome associates Gene UBA1. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Variant rs142765674 associates Disease herpes zoster. Variant rs541558502 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Variant rs9810195 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Variant rs117171752 associates Disease herpes zoster. Variant rs147482218 associates Disease herpes zoster. Disease herpes zoster associates Gene FAM110B. Variant rs17199328 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease herpes zoster associates Gene STAT1. Disease herpes zoster associates Gene POLR3C. Variant rs75640364 associates Disease herpes zoster. Disease herpes zoster associates Gene POLR3A. Variant rs765885335 associates Disease herpes zoster. Disease myelitis resembles Disease herpes zoster. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster associates Gene LRRC32. Disease herpes zoster associates Gene STAT3. Disease herpes zoster presents Symptom Hyperesthesia. Disease herpes zoster presents Symptom Dysuria. Disease herpes zoster presents Symptom Neuralgia. Disease herpes zoster presents Symptom Facial Paralysis. Disease peroneal neuropathy resembles Disease herpes zoster. Disease herpes zoster isa Disease nervous system disease. Disease herpes zoster presents Symptom Facial Pain. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster presents Symptom Toothache. Disease trigeminal neuralgia resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal cord. Compound CX-024414 treats Disease herpes zoster. Disease facial nerve disease resembles Disease herpes zoster. Disease herpes zoster isa Disease viral infectious disease. Disease herpes zoster presents Symptom Hypesthesia. Disease herpes zoster presents Symptom Neuralgia, Postherpetic. Disease herpes zoster presents Symptom Horner Syndrome. Disease herpes zoster localizes Anatomy spinal nerve. Disease amyotrophic neuralgia resembles Disease herpes zoster. \\nQuestion: Out of the given list, which Gene is associated with myelodysplastic syndrome and herpes zoster. Given list is: DTNB, HLA-B, ATP2B1, SLC14A2, KALRN'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989829.7128482}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/800c5e1c048211986d1e38de040f013f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/800c5e1c048211986d1e38de040f013f/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/800c5e1c048211986d1e38de040f013f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80478a17713509d8b0d999a0fa8de4d8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80478a17713509d8b0d999a0fa8de4d8/metadata.json new file mode 100644 index 0000000..fbead07 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80478a17713509d8b0d999a0fa8de4d8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5493707656860352, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Crohn's disease and ankylosing spondylitis. Given list is: YLPM1, CHEK2, ZEB2, HLA-DQA1, IL23R\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048244.5699408}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80478a17713509d8b0d999a0fa8de4d8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80478a17713509d8b0d999a0fa8de4d8/output.pkl Binary files differnew file mode 100644 index 0000000..2ab325c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80478a17713509d8b0d999a0fa8de4d8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80910a7fcfe4ac1af843fef60d757d1a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80910a7fcfe4ac1af843fef60d757d1a/metadata.json new file mode 100644 index 0000000..85ccf1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80910a7fcfe4ac1af843fef60d757d1a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5274958610534668, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with gastric fundus cancer and duodenal ulcer. Given list is: GSDMB, PSCA, CDKAL1, EML4, ADH1B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048816.6938584}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80910a7fcfe4ac1af843fef60d757d1a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80910a7fcfe4ac1af843fef60d757d1a/output.pkl Binary files differnew file mode 100644 index 0000000..05125ba --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80910a7fcfe4ac1af843fef60d757d1a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80b4ec5c026b2b74b1e2afef74b76560/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80b4ec5c026b2b74b1e2afef74b76560/metadata.json new file mode 100644 index 0000000..458a02a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80b4ec5c026b2b74b1e2afef74b76560/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7431354522705078, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with dermatomyositis and pulmonary hypertension. Given list is: TG, HLA-DPA1, PNPLA3, ZFPM2, UMOD'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048082.8139503}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80b4ec5c026b2b74b1e2afef74b76560/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80b4ec5c026b2b74b1e2afef74b76560/output.pkl Binary files differnew file mode 100644 index 0000000..fa63751 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80b4ec5c026b2b74b1e2afef74b76560/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80f3b7390c4f83acdd94b87254a6e387/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80f3b7390c4f83acdd94b87254a6e387/metadata.json new file mode 100644 index 0000000..3128749 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80f3b7390c4f83acdd94b87254a6e387/metadata.json @@ -0,0 +1 @@ +{"duration": 20.52070951461792, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cocaine dependence and androgenic alopecia. Given list is: ATG5, ADGRV1, NEURL1, SLC14A2, HLA-DPB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047822.3358388}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80f3b7390c4f83acdd94b87254a6e387/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80f3b7390c4f83acdd94b87254a6e387/output.pkl Binary files differnew file mode 100644 index 0000000..6447417 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/80f3b7390c4f83acdd94b87254a6e387/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/818ff01d4ab885188a1fa84c69f303db/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/818ff01d4ab885188a1fa84c69f303db/metadata.json new file mode 100644 index 0000000..2492279 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/818ff01d4ab885188a1fa84c69f303db/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5101273059844971, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and idiopathic pulmonary fibrosis. Given list is: SLC14A2, SLC14A2, MTTP, PSCA, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048359.8735697}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/818ff01d4ab885188a1fa84c69f303db/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/818ff01d4ab885188a1fa84c69f303db/output.pkl Binary files differnew file mode 100644 index 0000000..7e9cd20 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/818ff01d4ab885188a1fa84c69f303db/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81a42ef4c31b471233b3f60872af534a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81a42ef4c31b471233b3f60872af534a/metadata.json new file mode 100644 index 0000000..ce595c1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81a42ef4c31b471233b3f60872af534a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6309349536895752, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and idiopathic pulmonary fibrosis. Given list is: IL23R, BTBD9, SFRP4, PHGDH, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048672.5360994}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81a42ef4c31b471233b3f60872af534a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81a42ef4c31b471233b3f60872af534a/output.pkl Binary files differnew file mode 100644 index 0000000..fc053af --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81a42ef4c31b471233b3f60872af534a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81ab69b969253592e61ce713762c48e6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81ab69b969253592e61ce713762c48e6/metadata.json new file mode 100644 index 0000000..d19a4cf --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81ab69b969253592e61ce713762c48e6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46854615211486816, "input_args": {"instruction": "\"Context: Disease Sjogren's syndrome associates Gene HLA-DQA1. Disease Sjogren's syndrome associates Gene STAT4. Disease Sjogren's syndrome associates Gene TSBP1. Disease Sjogren's syndrome associates Gene HLA-DRA. Disease Sjogren's syndrome associates Gene IRF5. Gene MIR146B associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene GTF2I. Disease Sjogren's syndrome associates Gene BLK. Gene MIR146A associates Disease Sjogren's syndrome. Gene MIR326 associates Disease Sjogren's syndrome. Gene MIR126 associates Disease Sjogren's syndrome. Gene MIR155 associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene TNFAIP3. Gene MIR152 associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene TTR. Disease Sjogren's syndrome associates Gene TNIP1. Gene MIR148A associates Disease Sjogren's syndrome. Gene MIR335 associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene TNPO3. Gene MIR342 associates Disease Sjogren's syndrome. Gene MIR150 associates Disease Sjogren's syndrome. Disease myositis associates Gene STAT4. Disease myositis associates Gene HLA-B. Disease myositis associates Gene STING1. Disease myositis associates Gene TLR4. Disease myositis associates Gene FOXP3. Variant rs116662199 associates Disease myositis. Variant rs114042950 associates Disease myositis. Variant rs116088953 associates Disease myositis. Variant rs114012716 associates Disease myositis. Variant rs115146037 associates Disease myositis. Variant rs114388793 associates Disease myositis. Disease myositis associates Gene TNFRSF1A. Disease myositis associates Gene PTPN22. Disease myositis associates Gene FAS. Variant DQA1*05:01 associates Disease myositis. Variant rs3130614 associates Disease myositis. Variant rs114771815 associates Disease myositis. Disease myositis associates Gene IRF4. Disease myositis associates Gene IL23R. Disease myositis associates Gene LSM11. Variant rs114050967 associates Disease myositis. Disease myositis associates Gene C4A. Disease myositis associates Gene ATP6V1G2. Variant DQB1*02:01 associates Disease myositis. Disease myositis associates Gene IFNGR1. Disease myositis associates Gene TREX1. Disease myositis associates Gene IL10. Variant DRB1*15:01 associates Disease myositis. Disease myositis associates Gene COX3. Variant rs2476601 associates Disease myositis. Variant rs115902351 associates Disease myositis. Disease myositis associates Gene COX1. Disease myositis associates Gene DDX39B. Disease myositis associates Gene MEFV. Disease myositis associates Gene KLRC4. Disease myositis associates Gene MATR3. Variant DRB1*15 associates Disease myositis. Disease myositis associates Gene RNASEH2B. Disease myositis associates Gene IL12A. Variant DRB1*03:01 associates Disease myositis. Variant rs188088967 associates Disease myositis. Disease myositis associates Gene RNASEH2C. Disease myositis associates Gene RNASEH2A. Variant rs3129843 associates Disease myositis. Variant rs9267488 associates Disease myositis. \\nQuestion: Out of the given list, which Gene is associated with Sjogren's syndrome and myositis. Given list is: HLA-DQA1, KIT, TERT, STAT4, TERT\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048191.1284127}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81ab69b969253592e61ce713762c48e6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81ab69b969253592e61ce713762c48e6/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/81ab69b969253592e61ce713762c48e6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8226bf139f1e5d173e91b0331cf38f97/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8226bf139f1e5d173e91b0331cf38f97/metadata.json new file mode 100644 index 0000000..4ae229c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8226bf139f1e5d173e91b0331cf38f97/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5828275680541992, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with head and neck cancer and uveal melanoma. Given list is: ABO, CACNA2D1, PSCA, TERT, SULT1B1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989950.5678847}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8226bf139f1e5d173e91b0331cf38f97/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8226bf139f1e5d173e91b0331cf38f97/output.pkl Binary files differnew file mode 100644 index 0000000..029c9f3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8226bf139f1e5d173e91b0331cf38f97/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8279cf08d411856060adabab616767a9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8279cf08d411856060adabab616767a9/metadata.json new file mode 100644 index 0000000..62db0f3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8279cf08d411856060adabab616767a9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6563255786895752, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with anti-neutrophil antibody associated vasculitis and autoimmune disease. Given list is: rs17293632, rs2487928, rs429358, rs6679677, rs6679677'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049114.7175043}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8279cf08d411856060adabab616767a9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8279cf08d411856060adabab616767a9/output.pkl Binary files differnew file mode 100644 index 0000000..b2813d9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8279cf08d411856060adabab616767a9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/82cc79eb712c7ea1b72286db0974a03e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/82cc79eb712c7ea1b72286db0974a03e/metadata.json new file mode 100644 index 0000000..36b1c2e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/82cc79eb712c7ea1b72286db0974a03e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.49421072006225586, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with autoimmune hepatitis and cutaneous lupus erythematosus. Given list is: rs2187668, rs11724804, rs10497394, rs1801274, rs6457327'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048874.3534474}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/82cc79eb712c7ea1b72286db0974a03e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/82cc79eb712c7ea1b72286db0974a03e/output.pkl Binary files differnew file mode 100644 index 0000000..b474698 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/82cc79eb712c7ea1b72286db0974a03e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8344b541ce934b2e9c8edca2c2b411fa/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8344b541ce934b2e9c8edca2c2b411fa/metadata.json new file mode 100644 index 0000000..c45bea2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8344b541ce934b2e9c8edca2c2b411fa/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5463550090789795, "input_args": {"instruction": "'Context: Disease myositis associates Gene TNFRSF1A. Disease myositis associates Gene PTPN22. Disease myositis associates Gene HLA-B. Disease myositis associates Gene IRF4. Variant rs116662199 associates Disease myositis. Disease myositis associates Gene IFNGR1. Disease myositis associates Gene IRAK1. Disease myositis associates Gene TREX1. Variant rs114388793 associates Disease myositis. Disease myositis associates Gene FOXP3. Variant rs116088953 associates Disease myositis. Disease myositis associates Gene TLR4. Disease myositis associates Gene IL23R. Variant rs114012716 associates Disease myositis. Variant rs114042950 associates Disease myositis. Variant DRB1*15:01 associates Disease myositis. Variant rs114771815 associates Disease myositis. Disease myositis associates Gene IL12A. Variant rs115146037 associates Disease myositis. Variant DRB1*03:01 associates Disease myositis. Variant DRB1*15 associates Disease myositis. Disease myositis associates Gene IL10. Disease myositis associates Gene CCR1. Variant rs114050967 associates Disease myositis. Variant rs9267488 associates Disease myositis. Variant rs3130614 associates Disease myositis. Variant DRB1*03 associates Disease myositis. Disease myositis associates Gene HNRNPA2B1. Variant rs2476601 associates Disease myositis. Disease myositis associates Gene COX3. Disease myositis associates Gene COX1. Disease myositis associates Gene STAT4. Disease myositis associates Gene FAS. Disease myositis associates Gene MATR3. Disease myositis associates Gene MEFV. Variant rs115902351 associates Disease myositis. Variant rs188088967 associates Disease myositis. Disease myositis associates Gene KLRC4. Disease myositis associates Gene STING1. Variant rs3129843 associates Disease myositis. Disease myositis associates Gene C4A. Disease myositis associates Gene ATP6V1G2. Disease myositis associates Gene PSTPIP1. Variant B*08:01 associates Disease myositis. Disease myositis associates Gene ERAP1. Variant rs502919 associates Disease rheumatoid arthritis. Variant rs199894206 associates Disease rheumatoid arthritis. Variant rs3806624 associates Disease rheumatoid arthritis. Gene MIR4634 associates Disease rheumatoid arthritis. Variant rs4409785 associates Disease rheumatoid arthritis. Variant rs4602043 associates Disease rheumatoid arthritis. Variant rs59578717 associates Disease rheumatoid arthritis. Variant rs2203098 associates Disease rheumatoid arthritis. Variant rs9943599 associates Disease rheumatoid arthritis. Variant rs4936059 associates Disease rheumatoid arthritis. Variant rs3781094 associates Disease rheumatoid arthritis. Variant rs5987194 associates Disease rheumatoid arthritis. Variant rs5757628 associates Disease rheumatoid arthritis. Variant rs4452313 associates Disease rheumatoid arthritis. Variant rs4602367 associates Disease rheumatoid arthritis. Variant rs3184504 associates Disease rheumatoid arthritis. Variant rs2409780 associates Disease rheumatoid arthritis. Variant rs9939427 associates Disease rheumatoid arthritis. Variant rs3792876 associates Disease rheumatoid arthritis. Disease rheumatoid arthritis associates Gene HLA-B. Variant rs624988 associates Disease rheumatoid arthritis. Variant rs56095903 associates Disease rheumatoid arthritis. Variant rs149041927 associates Disease rheumatoid arthritis. Variant rs34695944 associates Disease rheumatoid arthritis. Variant rs142469968 associates Disease rheumatoid arthritis. Gene MIR573 associates Disease rheumatoid arthritis. Variant rs4728142 associates Disease rheumatoid arthritis. Variant rs4305317 associates Disease rheumatoid arthritis. Variant rs9860428 associates Disease rheumatoid arthritis. Variant rs56139217 associates Disease rheumatoid arthritis. Variant rs4853458 associates Disease rheumatoid arthritis. Variant rs2306848 associates Disease rheumatoid arthritis. Variant rs3807306 associates Disease rheumatoid arthritis. Variant rs5754100 associates Disease rheumatoid arthritis. Variant rs3761847 associates Disease rheumatoid arthritis. Variant rs9979383 associates Disease rheumatoid arthritis. Variant rs595158 associates Disease rheumatoid arthritis. Variant rs2847297 associates Disease rheumatoid arthritis. Variant rs2201584 associates Disease rheumatoid arthritis. Variant rs8043085 associates Disease rheumatoid arthritis. Variant rs61828284 associates Disease rheumatoid arthritis. Variant rs3761959 associates Disease rheumatoid arthritis. Variant rs59466457 associates Disease rheumatoid arthritis. Variant rs42034 associates Disease rheumatoid arthritis. Variant rs34030880 associates Disease rheumatoid arthritis. Variant rs35139284 associates Disease rheumatoid arthritis. Variant rs9494893 associates Disease rheumatoid arthritis. Variant rs2076615 associates Disease rheumatoid arthritis. Variant rs5754104 associates Disease rheumatoid arthritis. Variant rs58107865 associates Disease rheumatoid arthritis. Gene MIR296 associates Disease rheumatoid arthritis. Variant rs2075876 associates Disease rheumatoid arthritis. Variant rs3802604 associates Disease rheumatoid arthritis. Variant rs6859219 associates Disease rheumatoid arthritis. Variant rs9653442 associates Disease rheumatoid arthritis. Variant rs9296015 associates Disease rheumatoid arthritis. Variant rs1355208 associates Disease rheumatoid arthritis. Variant rs4622308 associates Disease rheumatoid arthritis. Gene MIR363 associates Disease rheumatoid arthritis. Disease rheumatoid arthritis associates Gene TMEM179. Variant rs2004640 associates Disease rheumatoid arthritis. Variant rs874040 associates Disease rheumatoid arthritis. Variant rs12467084 associates Disease rheumatoid arthritis. Variant rs4780401 associates Disease rheumatoid arthritis. Gene MIR498 associates Disease rheumatoid arthritis. Variant rs1043099 associates Disease rheumatoid arthritis. Variant rs4963581 associates Disease rheumatoid arthritis. Variant rs3134883 associates Disease rheumatoid arthritis. Variant rs2072438 associates Disease rheumatoid arthritis. Gene MIR19B1 associates Disease rheumatoid arthritis. Variant rs3781913 associates Disease rheumatoid arthritis. Variant rs9494894 associates Disease rheumatoid arthritis. Variant rs9275428 associates Disease rheumatoid arthritis. Variant rs6705628 associates Disease rheumatoid arthritis. Variant rs2157337 associates Disease rheumatoid arthritis. \\nQuestion: Out of the given list, which Gene is associated with myositis and rheumatoid arthritis. Given list is: C9, RORA, TERT, HLA-B, PTPN22'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990137.2192883}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8344b541ce934b2e9c8edca2c2b411fa/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8344b541ce934b2e9c8edca2c2b411fa/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8344b541ce934b2e9c8edca2c2b411fa/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/835fdb4bdb969f053945779f200ff821/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/835fdb4bdb969f053945779f200ff821/metadata.json new file mode 100644 index 0000000..c88e3a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/835fdb4bdb969f053945779f200ff821/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6156129837036133, "input_args": {"instruction": "'Context: Variant rs9581943 associates Disease pancreatic carcinoma. Variant rs539739051 associates Disease pancreatic carcinoma. Gene MIR429 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene CLPTM1L. Variant rs81002812 associates Disease pancreatic carcinoma. Variant rs543259829 associates Disease pancreatic carcinoma. Variant rs9543325 associates Disease pancreatic carcinoma. Variant rs587780192 associates Disease pancreatic carcinoma. Variant chr14:104000802 associates Disease pancreatic carcinoma. Variant rs4795218 associates Disease pancreatic carcinoma. Variant rs139770721 associates Disease pancreatic carcinoma. Variant rs1568205026 associates Disease pancreatic carcinoma. Variant rs879254095 associates Disease pancreatic carcinoma. Variant rs886059211 associates Disease pancreatic carcinoma. Variant rs80359306 associates Disease pancreatic carcinoma. Variant rs886038068 associates Disease pancreatic carcinoma. Variant rs121434220 associates Disease pancreatic carcinoma. Gene MIR129-1 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene TP53.. Variant rs587781633 associates Disease pancreatic carcinoma. Variant rs587776650 associates Disease pancreatic carcinoma. Gene MIR4787 associates Disease pancreatic carcinoma. Variant rs41293511 associates Disease pancreatic carcinoma. Variant rs555607708 associates Disease pancreatic carcinoma. Variant rs6971499 associates Disease pancreatic carcinoma. Gene MIR181B1 associates Disease pancreatic carcinoma. Variant rs16986825 associates Disease pancreatic carcinoma. Variant rs2255280 associates Disease pancreatic carcinoma. Gene MIR449A associates Disease pancreatic carcinoma. Variant rs13303010 associates Disease pancreatic carcinoma. Variant rs80359388 associates Disease pancreatic carcinoma. Variant rs1064794204 associates Disease pancreatic carcinoma. Variant rs886059208 associates Disease pancreatic carcinoma. Variant rs2080764943 associates Disease pancreatic carcinoma. Gene MIR484 associates Disease pancreatic carcinoma. Gene MIR200C associates Disease pancreatic carcinoma. Variant rs80359479 associates Disease pancreatic carcinoma. Variant rs139569694 associates Disease pancreatic carcinoma. Variant rs121434388 associates Disease pancreatic carcinoma. Variant rs515726123 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene CCDC68. Disease pancreatic carcinoma associates Gene KRT8. Gene MIR483 associates Disease pancreatic carcinoma. Variant rs80338965 associates Disease pancreatic carcinoma. Variant rs548068667 associates Disease pancreatic carcinoma. Variant rs397514495 associates Disease pancreatic carcinoma. Variant rs9554197 associates Disease pancreatic carcinoma. Variant rs505922 associates Disease pancreatic carcinoma. Variant rs199681533 associates Disease pancreatic carcinoma. Variant rs80358972 associates Disease pancreatic carcinoma. Gene MIR485 associates Disease pancreatic carcinoma. Variant rs9573163 associates Disease pancreatic carcinoma. Gene MIR182 associates Disease pancreatic carcinoma. Disease oral cavity cancer associates Gene GPN1.. Disease oral cavity cancer associates Gene CLPTM1L. Disease oral cavity cancer associates Gene HLA-DQB1. Disease oral cavity cancer associates Gene ADH1B. Variant rs121909224 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Variant rs8181047 associates Disease oral cavity cancer. Variant rs121913277 associates Disease oral cavity cancer. \\nQuestion: Out of the given list, which Gene is associated with pancreatic carcinoma and oral cavity cancer. Given list is: GCKR, CLPTM1L, CHST11, CRTC1, COL22A1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048135.9288538}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/835fdb4bdb969f053945779f200ff821/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/835fdb4bdb969f053945779f200ff821/output.pkl Binary files differnew file mode 100644 index 0000000..3304af7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/835fdb4bdb969f053945779f200ff821/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/837fa18d7e228b8cc588d0598e602ec5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/837fa18d7e228b8cc588d0598e602ec5/metadata.json new file mode 100644 index 0000000..840d72e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/837fa18d7e228b8cc588d0598e602ec5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7215695381164551, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and triple-receptor negative breast cancer. Given list is: TERT, SLC2A9, MYBPC3, HLA-DQA1, WNT10A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050443.0366752}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/837fa18d7e228b8cc588d0598e602ec5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/837fa18d7e228b8cc588d0598e602ec5/output.pkl Binary files differnew file mode 100644 index 0000000..3202f5a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/837fa18d7e228b8cc588d0598e602ec5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8423250305ac0670304b20f9e116ea7c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8423250305ac0670304b20f9e116ea7c/metadata.json new file mode 100644 index 0000000..a91b25d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8423250305ac0670304b20f9e116ea7c/metadata.json @@ -0,0 +1 @@ +{"duration": 23.616101026535034, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and collagenous colitis. Given list is: GATA3, HLA-DQA1, SNTB1, CHEK2, HLA-DRB5'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989820.916322}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8423250305ac0670304b20f9e116ea7c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8423250305ac0670304b20f9e116ea7c/output.pkl Binary files differnew file mode 100644 index 0000000..f431b36 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8423250305ac0670304b20f9e116ea7c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/847665085531a80686348a564b3e6b27/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/847665085531a80686348a564b3e6b27/metadata.json new file mode 100644 index 0000000..50d24c1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/847665085531a80686348a564b3e6b27/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8824150562286377, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Barrett's esophagus and esophagus adenocarcinoma. Given list is: HLA-DQB1, CRTC1, HLA-B, CFH, MYBPC3\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989881.5279603}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/847665085531a80686348a564b3e6b27/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/847665085531a80686348a564b3e6b27/output.pkl Binary files differnew file mode 100644 index 0000000..e990090 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/847665085531a80686348a564b3e6b27/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8490dec1fd10eac2292a5e8b3ea24d1c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8490dec1fd10eac2292a5e8b3ea24d1c/metadata.json new file mode 100644 index 0000000..80b2f45 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8490dec1fd10eac2292a5e8b3ea24d1c/metadata.json @@ -0,0 +1 @@ +{"duration": 22.17088770866394, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Crohn's disease and inflammatory bowel disease. Given list is: HBB, TNRC18, IL23R, RP1, LOXL1\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048241.648652}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8490dec1fd10eac2292a5e8b3ea24d1c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8490dec1fd10eac2292a5e8b3ea24d1c/output.pkl Binary files differnew file mode 100644 index 0000000..a05f9cb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8490dec1fd10eac2292a5e8b3ea24d1c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/84d8d294f842a57af5dd01449cef409b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/84d8d294f842a57af5dd01449cef409b/metadata.json new file mode 100644 index 0000000..2083d89 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/84d8d294f842a57af5dd01449cef409b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5331730842590332, "input_args": {"instruction": "'Context: Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs16991615 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene KCNK2. Variant rs11571833 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene ADCY9. Variant rs35840638 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene MDM4. Variant rs10771399 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor positive breast cancer associates Gene CDKN1A. Disease estrogen-receptor positive breast cancer associates Gene TNRC6B. Variant rs16991615 associates Disease estrogen-receptor positive breast cancer. Variant rs3176337 associates Disease estrogen-receptor positive breast cancer. Variant rs851982 associates Disease estrogen-receptor positive breast cancer. Disease estrogen-receptor positive breast cancer associates Gene MLLT10. Variant rs113113429 associates Disease estrogen-receptor positive breast cancer. Disease estrogen-receptor positive breast cancer associates Gene EXO1. Disease estrogen-receptor positive breast cancer associates Gene TP53. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs539960851 associates Disease breast cancer. Gene LTA4H marker Disease breast cancer. Variant rs1399574459 associates Disease breast cancer. Variant rs145009419 associates Disease breast cancer. Variant rs1567808616 associates Disease breast cancer. Variant rs4986854 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Variant rs528541334 associates Disease breast cancer. Variant rs12721593 associates Disease breast cancer. Variant rs576081828 associates Disease breast cancer. Variant rs1569104011 associates Disease breast cancer. Variant rs139438201 associates Disease breast cancer. Variant rs41293517 associates Disease breast cancer. Variant rs1565532289 associates Disease breast cancer. Variant rs1135401859 associates Disease breast cancer. Variant rs41293511 associates Disease breast cancer. Variant rs531398630 associates Disease breast cancer. Variant rs1218108009 associates Disease breast cancer. Variant rs56091799 associates Disease breast cancer. Variant rs41293491 associates Disease breast cancer. Variant rs41293521 associates Disease breast cancer. Variant rs145400590 associates Disease breast cancer. Variant rs200381392 associates Disease breast cancer. Variant rs137853009 associates Disease breast cancer. Variant rs1057519980 associates Disease breast cancer. Variant rs115031549 associates Disease breast cancer. Variant rs139612775 associates Disease breast cancer. Variant rs1555285984 associates Disease breast cancer. Variant rs551338531 associates Disease breast cancer. Variant rs1555461693 associates Disease breast cancer. Variant rs139555085 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555289508 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1566241850 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1312250808 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555285151 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555286858 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1566232310 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555281610 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555286856 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555281818 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555581858 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555285327 associates Disease hereditary breast ovarian cancer syndrome. Variant rs2070096 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555285984 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555285156 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555289810 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555280853 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555281918 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1566241948 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555285994 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1057521549 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1554294508 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555281898 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555280859 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555285139 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555281798 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1396595519 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555286818 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555591508 associates Disease hereditary breast ovarian cancer syndrome. Variant rs1555461618 associates Disease hereditary breast ovarian cancer syndrome. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and estrogen-receptor negative breast cancer. Given list is: TERT, CACNB2, ERAP1, PRKAA1, SHTN1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988568.6932287}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/84d8d294f842a57af5dd01449cef409b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/84d8d294f842a57af5dd01449cef409b/output.pkl Binary files differnew file mode 100644 index 0000000..c39bc26 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/84d8d294f842a57af5dd01449cef409b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/85b5741a6384a0b278fa1c8404b20dcc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/85b5741a6384a0b278fa1c8404b20dcc/metadata.json new file mode 100644 index 0000000..adfd500 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/85b5741a6384a0b278fa1c8404b20dcc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6979672908782959, "input_args": {"instruction": "'Context: Disease central nervous system cancer associates Gene FAM149B1. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PIK3CA. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SLC25A11. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene TERT. Variant rs2157719 associates Disease central nervous system cancer. Variant rs59060240 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene TMEM127. Variant rs35850753 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene TCTN3. Disease central nervous system cancer associates Gene CHEK2. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene NUTM1. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene LMNA. Variant rs1920116 associates Disease central nervous system cancer. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Variant rs111696067 associates Disease central nervous system cancer. Variant rs75061358 associates Disease central nervous system cancer. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene TUBB. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene TRAF7. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene ELP1. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene SMARCA4. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene EGFR. Variant rs1801591 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene LRP5. Disease central nervous system cancer associates Gene RTEL1. Disease central nervous system cancer associates Gene KLLN. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM216. Disease central nervous system cancer associates Gene BDNF. Disease central nervous system cancer associates Gene TSC2. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene ALX3. Disease central nervous system cancer associates Gene SMARCB1. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene KIF7. Disease central nervous system cancer associates Gene MYO1H. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene ALX1. Disease central nervous system cancer associates Gene LRRC31. Disease central nervous system cancer associates Gene TSC1. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene VCP. Disease central nervous system cancer associates Gene VPS16. Disease central nervous system cancer associates Gene CPLANE1. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ADAMTS3. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene CHMP2B. Disease central nervous system cancer associates Gene POLD1. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene TP53. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and triple-receptor negative breast cancer. Given list is: SLC17A4, KITLG, CAPN14, CACNA2D1, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048667.3796046}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/85b5741a6384a0b278fa1c8404b20dcc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/85b5741a6384a0b278fa1c8404b20dcc/output.pkl Binary files differnew file mode 100644 index 0000000..7cd4115 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/85b5741a6384a0b278fa1c8404b20dcc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/86289888a8eaa92b7d20654e5febd991/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/86289888a8eaa92b7d20654e5febd991/metadata.json new file mode 100644 index 0000000..850e339 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/86289888a8eaa92b7d20654e5febd991/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4168562889099121, "input_args": {"instruction": "'Context: Variant rs4268748 associates Disease squamous cell carcinoma. Variant rs4455710 associates Disease squamous cell carcinoma. Variant rs62209647 associates Disease squamous cell carcinoma. Variant rs62246017 associates Disease squamous cell carcinoma. Variant rs74664507 associates Disease squamous cell carcinoma. Variant rs149906873 associates Disease squamous cell carcinoma. Variant rs6791479 associates Disease squamous cell carcinoma. Variant rs121913431 associates Disease squamous cell carcinoma. Variant rs11571833 associates Disease squamous cell carcinoma. Variant rs35324266 associates Disease squamous cell carcinoma. Variant rs12203592 associates Disease squamous cell carcinoma. Variant rs1246946 associates Disease squamous cell carcinoma. Variant rs267598140 associates Disease squamous cell carcinoma. Variant rs10810657 associates Disease squamous cell carcinoma. Variant rs121913230 associates Disease squamous cell carcinoma. Variant rs6059655 associates Disease squamous cell carcinoma. Variant rs35063026 associates Disease squamous cell carcinoma. Variant rs9383064 associates Disease squamous cell carcinoma. Variant rs16891982 associates Disease squamous cell carcinoma. Variant rs2494938 associates Disease squamous cell carcinoma. Variant rs8063761 associates Disease squamous cell carcinoma. Variant rs13301660 associates Disease squamous cell carcinoma. Variant rs35407 associates Disease squamous cell carcinoma. Variant rs17879961 associates Disease squamous cell carcinoma. Variant rs1126809 associates Disease squamous cell carcinoma. Variant rs11707807 associates Disease squamous cell carcinoma. Variant rs1805007 associates Disease squamous cell carcinoma. Variant rs1460816 associates Disease squamous cell carcinoma. Variant rs1800407 associates Disease squamous cell carcinoma. Variant rs12916300 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene HLA-DQA1. Disease squamous cell carcinoma associates Gene CYP1B1. Disease squamous cell carcinoma associates Gene EPB41L1. Disease squamous cell carcinoma associates Gene COL14A1. Disease squamous cell carcinoma associates Gene SLC6A17. Disease squamous cell carcinoma associates Gene BRCA2. Disease squamous cell carcinoma associates Gene COL17A1. Disease squamous cell carcinoma associates Gene ERCC4. Disease squamous cell carcinoma associates Gene GATA1. Disease squamous cell carcinoma associates Gene SLC17A9. Disease squamous cell carcinoma associates Gene FOXP1. Disease squamous cell carcinoma associates Gene KRT14. Disease squamous cell carcinoma associates Gene MMP1. Disease squamous cell carcinoma associates Gene TP53. Disease squamous cell carcinoma associates Gene GTF2H5. Disease squamous cell carcinoma associates Gene SLC45A2. Disease squamous cell carcinoma associates Gene TRPS1. Disease squamous cell carcinoma associates Gene HERC2. Disease squamous cell carcinoma associates Gene GTF2E2. Disease squamous cell carcinoma associates Gene COL7A1. Disease squamous cell carcinoma associates Gene AHR. Disease squamous cell carcinoma associates Gene ERCC2. Disease squamous cell carcinoma associates Gene NOTCH1. Disease squamous cell carcinoma associates Gene CDKN2A. Disease squamous cell carcinoma associates Gene ATR. Disease squamous cell carcinoma associates Gene MC1R. Disease squamous cell carcinoma associates Gene STAT1. Disease squamous cell carcinoma associates Gene LRFN2. Disease squamous cell carcinoma associates Gene OCA2. Disease squamous cell carcinoma associates Gene KRT5. Disease squamous cell carcinoma associates Gene AAGAB. Disease squamous cell carcinoma associates Gene ATP11A. Disease squamous cell carcinoma associates Gene ERCC5. Disease squamous cell carcinoma associates Gene TERT. Disease squamous cell carcinoma associates Gene GJB2. Disease squamous cell carcinoma associates Gene ERCC3. Disease squamous cell carcinoma associates Gene TNFRSF10B. Disease squamous cell carcinoma associates Gene PIK3CA. Disease squamous cell carcinoma associates Gene NTHL1. Disease squamous cell carcinoma associates Gene CHEK2. Disease squamous cell carcinoma associates Gene PPARGC1B. Disease squamous cell carcinoma associates Gene TYR. Disease squamous cell carcinoma associates Gene CTSC. Disease squamous cell carcinoma associates Gene WNT10A. Disease squamous cell carcinoma associates Gene WRAP53. Variant rs4679956 associates Disease androgenic alopecia. Variant rs143149578 associates Disease androgenic alopecia. Variant rs58788673 associates Disease androgenic alopecia. Variant rs12203592 associates Disease androgenic alopecia. Variant rs61784834 associates Disease androgenic alopecia. Variant rs200644307 associates Disease androgenic alopecia. Variant rs62385385 associates Disease androgenic alopecia. Variant rs62146540 associates Disease androgenic alopecia. Variant rs2180439 associates Disease androgenic alopecia. Variant rs12752809 associates Disease androgenic alopecia. Variant chr17:43947866 associates Disease androgenic alopecia. Variant rs6752754 associates Disease androgenic alopecia. Variant rs6047844 associates Disease androgenic alopecia. Variant rs11037975 associates Disease androgenic alopecia. Variant rs9282858 associates Disease androgenic alopecia. Variant rs572756998 associates Disease androgenic alopecia. Variant rs5933688 associates Disease androgenic alopecia. Variant rs8085664 associates Disease androgenic alopecia. Variant rs68088846 associates Disease androgenic alopecia. Variant rs201408539 associates Disease androgenic alopecia. Variant rs11694173 associates Disease androgenic alopecia. Variant rs16863765 associates Disease androgenic alopecia. Variant rs111763724 associates Disease androgenic alopecia. Variant rs9357047 associates Disease androgenic alopecia. Variant rs182973285 associates Disease androgenic alopecia. Variant rs144149795 associates Disease androgenic alopecia. Variant rs9287638 associates Disease androgenic alopecia. Variant rs191648835 associates Disease androgenic alopecia. Variant rs34991987 associates Disease androgenic alopecia. Variant rs552649178 associates Disease androgenic alopecia. Variant rs6788232 associates Disease androgenic alopecia. Variant rs115182912 associates Disease androgenic alopecia. Variant rs3781458 associates Disease androgenic alopecia. Variant rs180807105 associates Disease androgenic alopecia. Variant rs11593840 associates Disease androgenic alopecia. Variant rs111668293 associates Disease androgenic alopecia. \\nQuestion: Out of the given list, which Variant is associated with squamous cell carcinoma and androgenic alopecia. Given list is: rs10455872, rs1011970, rs3814113, rs12203592, rs116264669'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050471.7227123}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/86289888a8eaa92b7d20654e5febd991/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/86289888a8eaa92b7d20654e5febd991/output.pkl Binary files differnew file mode 100644 index 0000000..936d8de --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/86289888a8eaa92b7d20654e5febd991/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/865795b541042ae22a447205cdb8bb6f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/865795b541042ae22a447205cdb8bb6f/metadata.json new file mode 100644 index 0000000..c64c05f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/865795b541042ae22a447205cdb8bb6f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6479830741882324, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriatic arthritis and diffuse large B-cell lymphoma. Given list is: HLA-DQB1, ABCG2, PTK2B, HLA-B, RP1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048752.9867797}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/865795b541042ae22a447205cdb8bb6f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/865795b541042ae22a447205cdb8bb6f/output.pkl Binary files differnew file mode 100644 index 0000000..b6fbb83 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/865795b541042ae22a447205cdb8bb6f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8665769e0a8d807e3528c6bf403305ca/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8665769e0a8d807e3528c6bf403305ca/metadata.json new file mode 100644 index 0000000..f003e50 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8665769e0a8d807e3528c6bf403305ca/metadata.json @@ -0,0 +1 @@ +{"duration": 12.144301414489746, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with Crohn's disease and ankylosing spondylitis. Given list is: rs8077245, rs11712066, rs11209026, rs10830962, rs6010620\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049041.2692282}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8665769e0a8d807e3528c6bf403305ca/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8665769e0a8d807e3528c6bf403305ca/output.pkl Binary files differnew file mode 100644 index 0000000..2ab325c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8665769e0a8d807e3528c6bf403305ca/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/874c702b0e6c3673bfe025f32783eb46/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/874c702b0e6c3673bfe025f32783eb46/metadata.json new file mode 100644 index 0000000..1adb578 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/874c702b0e6c3673bfe025f32783eb46/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6952950954437256, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and myeloproliferative neoplasm. Given list is: TG, CACNB2, PRKAA1, TERT, CACNA1S'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048361.6732}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/874c702b0e6c3673bfe025f32783eb46/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/874c702b0e6c3673bfe025f32783eb46/output.pkl Binary files differnew file mode 100644 index 0000000..154b0a7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/874c702b0e6c3673bfe025f32783eb46/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8789aacf68f63c45e3b186ca3d2164bb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8789aacf68f63c45e3b186ca3d2164bb/metadata.json new file mode 100644 index 0000000..02de9e2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8789aacf68f63c45e3b186ca3d2164bb/metadata.json @@ -0,0 +1 @@ +{"duration": 1.1734089851379395, "input_args": {"instruction": "'Context: Variant rs61835088 associates Disease cocaine dependence.. Variant rs2825295 associates Disease cocaine dependence. Variant rs2629540 associates Disease cocaine dependence. Disease cocaine dependence associates Gene FAM78B. Disease cocaine dependence associates Gene FAM53B. Disease ontology identifier of cocaine dependence is DOID:9975. Compound (1S,2S,6R,14R,15S,16R)-5-(cyclopropylmethyl)-16-[(2S)-2-hydroxy-3,3-dimethylbutan-2-yl]-15-methoxy-13-oxa-5-azahexacyclo[13.2.2.12,8.01,6.02,14.012,20]icosa-8(20),9,11-trien-11-ol treats Disease cocaine dependence. Compound Selegiline treats Disease cocaine dependence. Disease cocaine dependence isa Disease drug dependence. Disease cocaine dependence presents Symptom Dyskinesia, Drug-Induced. Disease cocaine dependence localizes Anatomy brain. Disease cocaine dependence presents Symptom Memory Disorders. Compound Pergolide treats Disease cocaine dependence. Disease cocaine dependence presents Symptom Hypesthesia. Variant rs12195582 associates Disease mature B-cell neoplasm. Disease mature B-cell neoplasm associates Gene GRAMD1B. Variant rs2647012 associates Disease mature B-cell neoplasm. Variant rs6444305 associates Disease mature B-cell neoplasm. \\nQuestion: Out of the given list, which Gene is associated with cocaine dependence and mature B-cell neoplasm. Given list is: CHST11, GSDMB, ERAP1, TP63, SLC14A2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048652.819267}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8789aacf68f63c45e3b186ca3d2164bb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8789aacf68f63c45e3b186ca3d2164bb/output.pkl Binary files differnew file mode 100644 index 0000000..c1636c0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8789aacf68f63c45e3b186ca3d2164bb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87a200c069527c8d997bbbcbddc6fbc9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87a200c069527c8d997bbbcbddc6fbc9/metadata.json new file mode 100644 index 0000000..65cbba9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87a200c069527c8d997bbbcbddc6fbc9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5209810733795166, "input_args": {"instruction": "'Context: Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene TNFRSF1A. Disease ankylosing spondylitis associates Gene IL6R. Disease ankylosing spondylitis associates Gene IL12B. Disease ankylosing spondylitis associates Gene IL1A. Variant rs12141575 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA1. Disease ankylosing spondylitis associates Gene FCGR2A. Variant rs4676410 associates Disease ankylosing spondylitis. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs10045403 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA2. Variant rs6556416 associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL17A. Disease ankylosing spondylitis associates Gene CDC37. Variant rs378108 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R1. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene MEFV. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs13001372 associates Disease ankylosing spondylitis. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs11624293 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs7743761 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene KIF21B. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs6600247 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R2. Variant rs11249215 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene BACH2. Gene MIR10B associates Disease ankylosing spondylitis. Variant rs2910686 associates Disease ankylosing spondylitis. Gene MIR146A associates Disease ankylosing spondylitis. Variant rs4129267 associates Disease ankylosing spondylitis. Variant rs17192932 associates Disease ankylosing spondylitis. Variant rs10865331 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL27. Gene MIR29A associates Disease ankylosing spondylitis. Variant HLA-B*27 associates Disease anterior uveitis. Variant rs114102658 associates Disease anterior uveitis. Variant rs116488202 associates Disease anterior uveitis. Variant rs149567432 associates Disease anterior uveitis. Variant HLA-B27 associates Disease anterior uveitis. Variant rs115879499 associates Disease anterior uveitis. Variant rs2032890 associates Disease anterior uveitis. Variant rs4672507 associates Disease anterior uveitis. Disease anterior uveitis associates Gene IL23R. Variant rs79755370 associates Disease anterior uveitis. Disease ontology identifier of anterior uveitis is DOID:1407. Disease anterior uveitis associates Gene ERAP1. Disease spondyloarthropathy resembles Disease anterior uveitis. Disease anterior uveitis localizes Anatomy sacro-iliac joint. Compound Fusidic Acid treats Disease anterior uveitis. Compound (3S,6S,9S,12S,15S,18S,21S,24S,30S,33S)-30-ethyl-33-[(1R,2R,4E)-1-hydroxy-2-methylhepta-4,6-dienyl]-1,4,7,10,12,15,19,25,28-nonamethyl-6,9,18,24-tetrakis(2-methylpropyl)-3,21-di(propan-2-yl)-1,4,7,10,13,16,19,22,25,28,31-undecazacyclotritriacontane-2,5,8,11,14,17,20,23,26,29,32-undecone treats Disease anterior uveitis. Disease scleritis resembles Disease anterior uveitis. Disease anterior uveitis presents Symptom Back Pain. Disease anterior uveitis resembles Disease keratoconjunctivitis. Disease anterior uveitis presents Symptom Eye Manifestations. Disease anterior uveitis resembles Disease endophthalmitis.. Disease anterior uveitis localizes Anatomy anterior segment of eyeball. Disease anterior uveitis resembles Disease reactive arthritis. Disease anterior uveitis localizes Anatomy anterior chamber of eyeball. Disease anterior uveitis localizes Anatomy eye trabecular meshwork. \\nQuestion: Out of the given list, which Gene is associated with ankylosing spondylitis and anterior uveitis. Given list is: CFH, XBP1, ERAP1, SYT14, HNF1B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989887.8803902}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87a200c069527c8d997bbbcbddc6fbc9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87a200c069527c8d997bbbcbddc6fbc9/output.pkl Binary files differnew file mode 100644 index 0000000..aa5a05f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87a200c069527c8d997bbbcbddc6fbc9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87b1d52c49e86aa0e9f10fbc1e4292fc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87b1d52c49e86aa0e9f10fbc1e4292fc/metadata.json new file mode 100644 index 0000000..e70b67e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87b1d52c49e86aa0e9f10fbc1e4292fc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7661280632019043, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and estrogen-receptor negative breast cancer. Given list is: JRK, PLG, PNPLA3, TERT, IL23R'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048365.6456633}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87b1d52c49e86aa0e9f10fbc1e4292fc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87b1d52c49e86aa0e9f10fbc1e4292fc/output.pkl Binary files differnew file mode 100644 index 0000000..a6c5230 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/87b1d52c49e86aa0e9f10fbc1e4292fc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88b862553ecae32e3284a08e560b483a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88b862553ecae32e3284a08e560b483a/metadata.json new file mode 100644 index 0000000..d3764c0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88b862553ecae32e3284a08e560b483a/metadata.json @@ -0,0 +1 @@ +{"duration": 1.3630046844482422, "input_args": {"instruction": "'Context: Gene MIR27B associates Disease allergic asthma. Disease ontology identifier of allergic asthma is DOID:9415. Gene MIR155 associates Disease allergic asthma. Gene MIR29C associates Disease allergic asthma. Gene MIR106B associates Disease allergic asthma. Gene MIR106A associates Disease allergic asthma. Gene MIR150 associates Disease allergic asthma. Disease allergic asthma isa Disease allergic disease.. Gene MIR34A associates Disease allergic asthma. Gene MIR375 associates Disease allergic asthma. Gene MIR34B associates Disease allergic asthma. Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene GATA3. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene SLC26A4. Disease autoimmune disease associates Gene AIRE. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene HLA-DPB1. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene SAA1. Disease autoimmune disease associates Gene HLA-DRA. Disease autoimmune disease associates Gene SAA2. Disease autoimmune disease associates Gene TNFRSF13C. Disease autoimmune disease associates Gene CCL21. Disease autoimmune disease associates Gene ANKRD55. Disease autoimmune disease associates Gene C4A. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene IL6R. Disease autoimmune disease associates Gene CCL2. Disease autoimmune disease associates Gene IL2RB. Disease autoimmune disease associates Gene C4B. Disease autoimmune disease associates Gene MEFV. Disease autoimmune disease associates Gene TNFRSF13B. Disease autoimmune disease associates Gene IL4. Disease autoimmune disease associates Gene OAS1. Disease autoimmune disease associates Gene FOXP3. Disease autoimmune disease associates Gene IL10RA. Disease autoimmune disease associates Gene IFNG. Disease autoimmune disease associates Gene PTPN22. Disease autoimmune disease associates Gene AFF3. Disease autoimmune disease associates Gene ITGAM. Disease autoimmune disease associates Gene TLR5. Disease autoimmune disease associates Gene CYP27B1. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene IL10RB. Disease autoimmune disease associates Gene ARID5B. Disease autoimmune disease associates Gene CD247. Disease autoimmune disease associates Gene UBE2L3. Disease autoimmune disease associates Gene IL7R. Disease autoimmune disease associates Gene FCGR2B. Disease autoimmune disease associates Gene LTA. Disease autoimmune disease associates Gene PDCD1. \\nQuestion: Out of the given list, which Variant is associated with atopic asthma and autoimmune disease. Given list is: rs2447827, rs1937455, rs62324212, rs12205199, rs4482879'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049164.3325326}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88b862553ecae32e3284a08e560b483a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88b862553ecae32e3284a08e560b483a/output.pkl Binary files differnew file mode 100644 index 0000000..1cac059 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88b862553ecae32e3284a08e560b483a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88d601b153aad06cfbfbf2557cad05b0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88d601b153aad06cfbfbf2557cad05b0/metadata.json new file mode 100644 index 0000000..2bdc0fb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88d601b153aad06cfbfbf2557cad05b0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6794347763061523, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with squamous cell carcinoma and estrogen-receptor negative breast cancer. Given list is: BRCA2, RBFOX1, UCK2, PNPLA3, RAD51B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990179.9918394}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88d601b153aad06cfbfbf2557cad05b0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88d601b153aad06cfbfbf2557cad05b0/output.pkl Binary files differnew file mode 100644 index 0000000..ccc7948 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/88d601b153aad06cfbfbf2557cad05b0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8977e50ae68322657897c0605de1638b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8977e50ae68322657897c0605de1638b/metadata.json new file mode 100644 index 0000000..cba1aa0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8977e50ae68322657897c0605de1638b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.601707935333252, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with dengue hemorrhagic fever and intracranial aneurysm. Given list is: RP1, TLR1, UCK2, GNE, FADS1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989943.6455777}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8977e50ae68322657897c0605de1638b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8977e50ae68322657897c0605de1638b/output.pkl Binary files differnew file mode 100644 index 0000000..8365f42 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8977e50ae68322657897c0605de1638b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ab76741ae435491cc980479b95cfc53/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ab76741ae435491cc980479b95cfc53/metadata.json new file mode 100644 index 0000000..d84b098 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ab76741ae435491cc980479b95cfc53/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5443160533905029, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Gene MIR21 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene SYNPR. Disease nephrotic syndrome associates Gene HLA-DQB1. Variant HLA-DQB1*03 associates Disease nephrotic syndrome. Variant HLA-DQB1*03:03 associates Disease nephrotic syndrome. Variant HLA-DQA1*01 associates Disease nephrotic syndrome. Variant HLA-DQA1*02:01 associates Disease nephrotic syndrome. Variant rs369558225 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IL2RG. Variant rs369363545 associates Disease nephrotic syndrome. Variant rs769259446 associates Disease nephrotic syndrome. Variant rs1569495819 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IFIH1. Variant rs529211517 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene FOXP3. Disease nephrotic syndrome associates Gene SLC17A5. Disease nephrotic syndrome associates Gene ANLN. Variant rs570583897 associates Disease nephrotic syndrome. Variant rs959473971 associates Disease nephrotic syndrome. Variant rs573527081 associates Disease nephrotic syndrome. Variant rs766881276 associates Disease nephrotic syndrome. Variant rs1568296260 associates Disease nephrotic syndrome. Variant rs1223251037 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SLC35A2. Variant rs376983109 associates Disease nephrotic syndrome. Variant rs759043857 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Variant rs769834604 associates Disease nephrotic syndrome. Variant rs114203578 associates Disease nephrotic syndrome. Variant rs118203956 associates Disease nephrotic syndrome. Variant rs1480919035 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SAA1. Variant rs371914169 associates Disease nephrotic syndrome. Variant rs2637678 associates Disease nephrotic syndrome. Variant rs1601356283 associates Disease nephrotic syndrome. Variant rs370860586 associates Disease nephrotic syndrome. Variant rs786204632 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Variant rs4642516 associates Disease nephrotic syndrome. Variant rs386833935 associates Disease nephrotic syndrome. Variant rs2045467851 associates Disease nephrotic syndrome. Variant rs769133638 associates Disease nephrotic syndrome. Variant rs1265889 associates Disease nephrotic syndrome. Variant rs199506378 associates Disease nephrotic syndrome. Variant rs771769006 associates Disease nephrotic syndrome. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs150183033 associates Disease nephrotic syndrome. Variant rs762704370 associates Disease nephrotic syndrome. Variant rs386833947 associates Disease nephrotic syndrome. Variant rs1673255837 associates Disease nephrotic syndrome. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs386833920 associates Disease nephrotic syndrome. Variant rs386833909 associates Disease nephrotic syndrome. Variant rs28366266 associates Disease nephrotic syndrome. Variant rs886058679 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Variant rs9273542 associates Disease nephrotic syndrome. Variant rs138656762 associates Disease nephrotic syndrome. Variant rs386833863 associates Disease nephrotic syndrome. Variant rs1890103037 associates Disease nephrotic syndrome. Variant rs776859868 associates Disease nephrotic syndrome. Variant rs2066736944 associates Disease nephrotic syndrome. Variant rs757674160 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Variant rs145623004 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene APOA1. Variant rs1673967760 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Variant rs554480714 associates Disease nephrotic syndrome. Variant rs766482429 associates Disease nephrotic syndrome. Variant rs2068656107 associates Disease nephrotic syndrome. Variant rs2063103741 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ITGA3. Variant rs143284092 associates Disease nephrotic syndrome. Variant rs1191455921 associates Disease nephrotic syndrome. Variant rs386833911 associates Disease nephrotic syndrome. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and nephrotic syndrome. Given list is: IGF1R, HLA-DQB1, IL2RA, SLC17A4, EPDR1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989648.6221163}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ab76741ae435491cc980479b95cfc53/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ab76741ae435491cc980479b95cfc53/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ab76741ae435491cc980479b95cfc53/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ad33f05ff2be4eb7a9738d1407d465a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ad33f05ff2be4eb7a9738d1407d465a/metadata.json new file mode 100644 index 0000000..3fee1b4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ad33f05ff2be4eb7a9738d1407d465a/metadata.json @@ -0,0 +1 @@ +{"duration": 8.266141176223755, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Kuhnt-Junius degeneration and age related macular degeneration. Given list is: CFH, CACNA2D1, STAT4, LACC1, SFRP4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990003.6546793}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ad33f05ff2be4eb7a9738d1407d465a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ad33f05ff2be4eb7a9738d1407d465a/output.pkl Binary files differnew file mode 100644 index 0000000..1af1d05 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ad33f05ff2be4eb7a9738d1407d465a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ae786a42070c4c086c853a3e83fc739/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ae786a42070c4c086c853a3e83fc739/metadata.json new file mode 100644 index 0000000..2e129a3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ae786a42070c4c086c853a3e83fc739/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5785448551177979, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and autoimmune disease. Given list is: rs7936312, rs325485, rs13191786, rs72928038, rs7523907'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049053.6852221}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ae786a42070c4c086c853a3e83fc739/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ae786a42070c4c086c853a3e83fc739/output.pkl Binary files differnew file mode 100644 index 0000000..172aea2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ae786a42070c4c086c853a3e83fc739/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b674cbaf6af594d1a20f76b6385e10a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b674cbaf6af594d1a20f76b6385e10a/metadata.json new file mode 100644 index 0000000..d29687d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b674cbaf6af594d1a20f76b6385e10a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.423961877822876, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oral cavity cancer and rheumatic heart disease. Given list is: HLA-DQB1, HBB, TNNT2, ITPA, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989767.710684}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b674cbaf6af594d1a20f76b6385e10a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b674cbaf6af594d1a20f76b6385e10a/output.pkl Binary files differnew file mode 100644 index 0000000..9f7deed --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b674cbaf6af594d1a20f76b6385e10a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b74584f906145c2b1fc084420282994/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b74584f906145c2b1fc084420282994/metadata.json new file mode 100644 index 0000000..1b47804 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b74584f906145c2b1fc084420282994/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4698011875152588, "input_args": {"instruction": "'Context: Disease psoriasis 1 associates Gene HLA-C.. Disease ontology identifier of psoriasis 4 is DOID:0111280. Variant rs465969 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Disease psoriasis associates Gene HLA-B. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs2201841 associates Disease psoriasis. Variant rs4685408 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant rs4921493 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs610604 associates Disease psoriasis. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs62149416 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs55823223 associates Disease psoriasis. Disease psoriasis associates Gene IRF2BP2. Variant rs1960278 x rs4947314 associates Disease psoriasis. Variant rs12191877 x rs2534666 associates Disease psoriasis. Variant rs45533135 x rs9267464 associates Disease psoriasis. Variant rs12445568 associates Disease psoriasis. Variant rs12130219 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs6929464 x rs1265112 associates Disease psoriasis. Variant rs559406 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs59827721 associates Disease psoriasis. Variant rs9487605 associates Disease psoriasis. Variant rs11653893 associates Disease psoriasis 2.. Variant rs2066964 associates Disease psoriasis 2. Variant rs11652075 associates Disease psoriasis 2. Variant rs587777763 associates Disease psoriasis 2. Disease psoriasis 13 associates Gene TRAF3IP2.. \\nQuestion: Out of the given list, which Gene is associated with psoriasis and allergic rhinitis. Given list is: ATP2B1, HLA-B, STAT4, TERT, FADS1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988420.8478806}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b74584f906145c2b1fc084420282994/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b74584f906145c2b1fc084420282994/output.pkl Binary files differnew file mode 100644 index 0000000..eaa8405 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b74584f906145c2b1fc084420282994/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b813a578ef51480af0f4999bf181a07/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b813a578ef51480af0f4999bf181a07/metadata.json new file mode 100644 index 0000000..16da1e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b813a578ef51480af0f4999bf181a07/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5786905288696289, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and cutaneous lupus erythematosus. Given list is: PRKN, HLA-DPA1, VAV3, RBFOX1, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048185.5530076}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b813a578ef51480af0f4999bf181a07/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b813a578ef51480af0f4999bf181a07/output.pkl Binary files differnew file mode 100644 index 0000000..9ac3168 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b813a578ef51480af0f4999bf181a07/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b8e8f0869e80f788208dea0944beb91/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b8e8f0869e80f788208dea0944beb91/metadata.json new file mode 100644 index 0000000..174f18e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b8e8f0869e80f788208dea0944beb91/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5530636310577393, "input_args": {"instruction": "'Context: Variant rs1057519960 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs387906631 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene PTPN11. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene HSPA9. Variant rs1576745225 associates Disease myelodysplastic syndrome. Variant rs11540652 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs371769427 associates Disease myelodysplastic syndrome. Variant rs752471895 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs752746786 associates Disease myelodysplastic syndrome. Variant rs769053835 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs12203592 associates Disease myelodysplastic syndrome. Variant rs147001633 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs121434596 associates Disease myelodysplastic syndrome. Variant rs121913500 associates Disease myelodysplastic syndrome. Variant rs104894229 associates Disease myelodysplastic syndrome.. Disease myelodysplastic syndrome associates Gene FANCD2. Variant rs121913237 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs78898975 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCC. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene SH2B3. Disease myelodysplastic syndrome associates Gene FANCL. Disease myelodysplastic syndrome associates Gene FANCF. Variant rs769081887 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCI. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene FANCG. Disease myelodysplastic syndrome associates Gene FANCM. Disease myelodysplastic syndrome associates Gene FANCE. Disease myelodysplastic syndrome associates Gene DNAJC21. Variant rs193303018 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene UBA1. Disease myelodysplastic syndrome associates Gene RPS14. Variant rs377023736 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Disease myelodysplastic syndrome associates Gene UBE2T. Variant rs267606870 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA1. Disease myelodysplastic syndrome associates Gene RAD51C. Gene MIR424 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA2. Disease myelodysplastic syndrome associates Gene SRP72. Disease myelodysplastic syndrome associates Gene TET2. Disease myelodysplastic syndrome associates Gene CLPB. Disease myelodysplastic syndrome associates Gene RPS10. Disease myelodysplastic syndrome associates Gene CDKN2A. Disease myelodysplastic syndrome associates Gene RUNX1. Disease myelodysplastic syndrome associates Gene DKC1. Disease psoriatic arthritis associates Gene MFSD4B. Disease psoriatic arthritis associates Gene HLA-B. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-DRB1. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-F. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs1610601 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Gene MIR15A associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Variant rs4921482 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-C. Variant rs4921483 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TRAF3IP2. Variant rs114757170 associates Disease psoriatic arthritis. Gene MIR424 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs149997688 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL12B. Disease psoriatic arthritis associates Gene STAT2. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs28724231 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Disease psoriatic arthritis associates Gene MUC22. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs76956521 associates Disease psoriatic arthritis. \\nQuestion: Out of the given list, which Gene is associated with myelodysplastic syndrome and psoriatic arthritis. Given list is: MST1, BTNL2, HLA-B, HERC2, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047714.5884402}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b8e8f0869e80f788208dea0944beb91/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b8e8f0869e80f788208dea0944beb91/output.pkl Binary files differnew file mode 100644 index 0000000..04e9a68 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8b8e8f0869e80f788208dea0944beb91/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ba39425f015e7bcc0ae095a4d94619a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ba39425f015e7bcc0ae095a4d94619a/metadata.json new file mode 100644 index 0000000..c4e792a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ba39425f015e7bcc0ae095a4d94619a/metadata.json @@ -0,0 +1 @@ +{"duration": 10.008195877075195, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and squamous cell carcinoma. Given list is: BRCA2, CLDN14, HLA-DPB1, HLA-DQB1, MTTP'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048058.7052078}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ba39425f015e7bcc0ae095a4d94619a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ba39425f015e7bcc0ae095a4d94619a/output.pkl Binary files differnew file mode 100644 index 0000000..bcb6984 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ba39425f015e7bcc0ae095a4d94619a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8d81762a8c5ae03ccf79cd3f775d59c4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8d81762a8c5ae03ccf79cd3f775d59c4/metadata.json new file mode 100644 index 0000000..94ca33e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8d81762a8c5ae03ccf79cd3f775d59c4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7804224491119385, "input_args": {"instruction": "'Context: Variant rs67538026 associates Disease Kuhnt-Junius degeneration. Variant rs8135665 associates Disease Kuhnt-Junius degeneration. Variant rs11884770 associates Disease Kuhnt-Junius degeneration. Variant rs61985136 associates Disease Kuhnt-Junius degeneration. Variant rs61941274 associates Disease Kuhnt-Junius degeneration. Variant rs62247658 associates Disease Kuhnt-Junius degeneration. Variant rs9564692 associates Disease Kuhnt-Junius degeneration. Variant rs187328863 associates Disease Kuhnt-Junius degeneration. Variant rs114092250 associates Disease Kuhnt-Junius degeneration. Variant rs201459901 associates Disease Kuhnt-Junius degeneration. Variant rs62358361 associates Disease Kuhnt-Junius degeneration. Variant rs58978565 associates Disease Kuhnt-Junius degeneration. Variant rs61818925 associates Disease Kuhnt-Junius degeneration. Variant rs2070895 associates Disease Kuhnt-Junius degeneration. Variant rs570618 associates Disease Kuhnt-Junius degeneration. Variant rs147859257 associates Disease Kuhnt-Junius degeneration. Variant rs114254831 associates Disease Kuhnt-Junius degeneration. Variant rs116503776 associates Disease Kuhnt-Junius degeneration. Variant rs5754227 associates Disease Kuhnt-Junius degeneration. Variant rs62642574 associates Disease age related macular degeneration. Variant rs76157638 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene FBLN5. Disease age related macular degeneration associates Gene C2. Disease age related macular degeneration associates Gene NOTCH4. Disease age related macular degeneration associates Gene HERC2. Disease age related macular degeneration associates Gene APOE. Disease age related macular degeneration associates Gene TNFRSF10A. Disease age related macular degeneration associates Gene ASPM. Disease age related macular degeneration associates Gene SYN3. Disease age related macular degeneration associates Gene NT5DC1. Disease age related macular degeneration associates Gene ABCA4. Disease age related macular degeneration associates Gene ELOVL4. Disease age related macular degeneration associates Gene HTRA1. Disease age related macular degeneration associates Gene TLR4. Disease age related macular degeneration associates Gene ERCC6. Disease age related macular degeneration associates Gene RAD51B. Disease age related macular degeneration associates Gene CX3CR1. Disease age related macular degeneration associates Gene CST3. Disease age related macular degeneration associates Gene FRK. Disease age related macular degeneration associates Gene TIMP3. Disease age related macular degeneration associates Gene F13B. Disease age related macular degeneration associates Gene ARMS2. Disease age related macular degeneration associates Gene HMCN1. Disease age related macular degeneration associates Gene C9. Disease age related macular degeneration associates Gene C3. Disease age related macular degeneration associates Gene TGFBR1. Disease age related macular degeneration associates Gene BEST1. Disease age related macular degeneration associates Gene MCUB. Disease age related macular degeneration associates Gene COL10A1. Disease age related macular degeneration associates Gene CFB. Disease age related macular degeneration associates Gene B3GLCT. Disease age related macular degeneration associates Gene COL8A1. \\nQuestion: Out of the given list, which Variant is associated with Kuhnt-Junius degeneration and age related macular degeneration. Given list is: rs219780, rs3197999, rs4072037, rs6691768, rs10490924'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048931.0356078}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8d81762a8c5ae03ccf79cd3f775d59c4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8d81762a8c5ae03ccf79cd3f775d59c4/output.pkl Binary files differnew file mode 100644 index 0000000..ad6abdc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8d81762a8c5ae03ccf79cd3f775d59c4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ddba8e9fe586d29cae22c465b5e8c07/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ddba8e9fe586d29cae22c465b5e8c07/metadata.json new file mode 100644 index 0000000..94b5b6a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ddba8e9fe586d29cae22c465b5e8c07/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6423249244689941, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with inflammatory bowel disease and Kawasaki disease. Given list is: rs3764147, rs1801274, rs3814113, rs479844, rs13141641'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048864.8791375}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ddba8e9fe586d29cae22c465b5e8c07/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ddba8e9fe586d29cae22c465b5e8c07/output.pkl Binary files differnew file mode 100644 index 0000000..424ca31 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8ddba8e9fe586d29cae22c465b5e8c07/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8df0d14d1a7bb85e5bb8cccd5d4db24e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8df0d14d1a7bb85e5bb8cccd5d4db24e/metadata.json new file mode 100644 index 0000000..0a7a9e3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8df0d14d1a7bb85e5bb8cccd5d4db24e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5929436683654785, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with mature B-cell neoplasm and androgenic alopecia. Given list is: HLA-DPA1, PRKAG2, ERAP1, SLC14A2, FER'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989591.677961}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8df0d14d1a7bb85e5bb8cccd5d4db24e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8df0d14d1a7bb85e5bb8cccd5d4db24e/output.pkl Binary files differnew file mode 100644 index 0000000..4c82c85 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8df0d14d1a7bb85e5bb8cccd5d4db24e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e10d750588b68480dec4aff999f12c0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e10d750588b68480dec4aff999f12c0/metadata.json new file mode 100644 index 0000000..00f6c39 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e10d750588b68480dec4aff999f12c0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6746387481689453, "input_args": {"instruction": "'Context: Variant rs59060240 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Variant rs2736100 associates Disease central nervous system cancer. Variant rs111696067 associates Disease central nervous system cancer. Variant rs2157719 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Variant rs6010620 associates Disease central nervous system cancer. Variant rs35850753 associates Disease central nervous system cancer. Variant rs498872 associates Disease central nervous system cancer. Variant rs75061358 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Variant rs12803321 associates Disease central nervous system cancer. Variant rs2853676 associates Disease central nervous system cancer. Variant rs1920116 associates Disease central nervous system cancer. Variant rs8753 associates Disease central nervous system cancer. Variant rs2236507 associates Disease central nervous system cancer. Variant rs648044 associates Disease central nervous system cancer. Variant rs12230172 associates Disease central nervous system cancer. Variant rs1801591 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Variant rs1412829 associates Disease central nervous system cancer. Variant rs4809324 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene SLC25A11. Disease central nervous system cancer associates Gene NRAS. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene VCP. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene ASCL1. Disease central nervous system cancer associates Gene ALX3. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene RAF1. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene ALX1. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene TSC2. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene LMNA. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene GNAS. Disease central nervous system cancer associates Gene APC2. Disease central nervous system cancer associates Gene PDCD10. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene NSD1. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene FAT4. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene CPLANE1. Disease central nervous system cancer associates Gene APC. Disease central nervous system cancer associates Gene MYO1H. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs397507484 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs397507483 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs113488022 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs150036236 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Variant rs397507546 associates Disease lung adenocarcinoma. Variant rs13314271 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs587782664 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs5879422 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs4324798 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs147001633 associates Disease lung adenocarcinoma. Variant rs587776805 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs397516896 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs2179920 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs121913273 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs876660807 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs1554350382 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs530941076 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs121917759 associates Disease lung adenocarcinoma. Variant rs786202962 associates Disease lung adenocarcinoma. Variant rs876659675 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs876659802 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Variant is associated with central nervous system cancer and lung adenocarcinoma. Given list is: rs7426056, rs2736100, rs2187668, rs2107595, rs7405776'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048996.2403226}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e10d750588b68480dec4aff999f12c0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e10d750588b68480dec4aff999f12c0/output.pkl Binary files differnew file mode 100644 index 0000000..919d9f3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e10d750588b68480dec4aff999f12c0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e241cab4fdd145ad8c021b4591dd43a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e241cab4fdd145ad8c021b4591dd43a/metadata.json new file mode 100644 index 0000000..30ea7b9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e241cab4fdd145ad8c021b4591dd43a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6675055027008057, "input_args": {"instruction": "'Context: Disease atrophic gastritis associates Gene PSCA. Disease atrophic gastritis associates Gene CDH1. Disease atrophic gastritis associates Gene IFIH1. Disease atrophic gastritis associates Gene KRAS. Disease atrophic gastritis associates Gene NFKB1. Variant rs2920283 associates Disease atrophic gastritis. Variant rs2294008 associates Disease atrophic gastritis.. Disease atrophic gastritis associates Gene LRBA. Disease atrophic gastritis associates Gene CTLA4. Disease atrophic gastritis associates Gene AIRE. Gene MIR155 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene IL1RN. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene PSCA. Disease gastric fundus cancer associates Gene PRKAA1. Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene NPIPB2. Disease gastric fundus cancer associates Gene ABO. \\nQuestion: Out of the given list, which Gene is associated with atrophic gastritis and gastric fundus cancer. Given list is: EYA2, CDKAL1, KAT2B, PSCA, PSCA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047885.7706847}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e241cab4fdd145ad8c021b4591dd43a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e241cab4fdd145ad8c021b4591dd43a/output.pkl Binary files differnew file mode 100644 index 0000000..33ad383 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e241cab4fdd145ad8c021b4591dd43a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e2add90b036cb07df93a683f938b16f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e2add90b036cb07df93a683f938b16f/metadata.json new file mode 100644 index 0000000..8d0f044 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e2add90b036cb07df93a683f938b16f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5843405723571777, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. Disease oral cavity cancer associates Gene HLA-DQB1. Disease oral cavity cancer associates Gene ADH1B. Disease oral cavity cancer associates Gene GPN1.. Variant rs692309 associates Disease oral cavity cancer. Variant rs6547741 associates Disease oral cavity cancer. Variant rs201982221 associates Disease oral cavity cancer. Variant rs121909224 associates Disease oral cavity cancer. Variant rs3828805 associates Disease oral cavity cancer. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and oral cavity cancer. Given list is: CACNA2D1, HLF, SULT1B1, HLA-DQB1, DLEU7'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047683.5813427}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e2add90b036cb07df93a683f938b16f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e2add90b036cb07df93a683f938b16f/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8e2add90b036cb07df93a683f938b16f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8f59c27508996b8dcc62a6f23654d12b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8f59c27508996b8dcc62a6f23654d12b/metadata.json new file mode 100644 index 0000000..2bc01c0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8f59c27508996b8dcc62a6f23654d12b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5264973640441895, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung squamous cell carcinoma and estrogen-receptor negative breast cancer. Given list is: STAT4, CACNA2D1, KIF1B, ATXN2, BRCA2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048756.6093645}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8f59c27508996b8dcc62a6f23654d12b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8f59c27508996b8dcc62a6f23654d12b/output.pkl Binary files differnew file mode 100644 index 0000000..fb9d464 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8f59c27508996b8dcc62a6f23654d12b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8fa7ac28cdf9324638e895f7b374a881/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8fa7ac28cdf9324638e895f7b374a881/metadata.json new file mode 100644 index 0000000..f7a2fed --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8fa7ac28cdf9324638e895f7b374a881/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6318681240081787, "input_args": {"instruction": "\"Context: Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene PTK2B. Disease Takayasu's arteritis associates Gene PSORS1C1. Disease Takayasu's arteritis associates Gene HLA-DQB2. Variant rs9262437 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene GPANK1. Disease Takayasu's arteritis associates Gene PRRC2A. Variant rs9271066 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DOB. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant rs9266745 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRT4. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Variant rs1383258 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Variant rs12524487 associates Disease Takayasu's arteritis. Variant rs12524487\\xa0 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant HLAB*1501 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs12526858 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene ABHD16A. Disease Takayasu's arteritis associates Gene LY6G5C. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs28834970 associates Disease Takayasu's arteritis. Variant HLAB*1302 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G5B. Variant rs4817984 associates Disease Takayasu's arteritis. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs2844678 associates Disease Takayasu's arteritis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs892085 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Disease psoriasis associates Gene HLA-B. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs9988642 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs41298997 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Disease psoriasis associates Gene PTPN2. Variant rs28998802 associates Disease psoriasis. Variant rs17728338 x rs13203895 associates Disease psoriasis. Disease psoriasis associates Gene CACNA1G. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant rs75851973 x rs13191519 associates Disease psoriasis. Variant rs13203895 x rs4418214 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant rs8128234 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DRB1. Variant rs149798287 associates Disease psoriasis. Variant rs13210132 x rs130069 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant rs12119179 associates Disease psoriasis. Variant rs62149416 associates Disease psoriasis. Variant rs12191877 x rs10848821 associates Disease psoriasis. Variant rs12586317 associates Disease psoriasis. Variant rs12527188 x rs2853961 associates Disease psoriasis. Variant rs1639110 x rs17206680 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant rs1639110 x rs4358666 associates Disease psoriasis. Variant rs13202464 x rs9267677 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs1131017 associates Disease psoriasis. Variant rs142903734 associates Disease psoriasis. Variant rs143700362 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant rs12191877 x rs2534666 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs76956521 x rs13191519 associates Disease psoriasis. Variant rs12130219 associates Disease psoriasis. Variant rs610037 associates Disease psoriasis. Variant rs114934997 associates Disease psoriasis. Variant rs2894176 x rs12191877 associates Disease psoriasis. Variant rs45533135 x rs9267464 associates Disease psoriasis. Variant rs13210132 x rs45533135 associates Disease psoriasis. Variant rs12191877 associates Disease psoriasis. Variant rs492602 associates Disease psoriasis. Variant rs12445568 associates Disease psoriasis. Variant rs75851973 x rs10484554 associates Disease psoriasis. Variant rs3130517 x rs12191877 associates Disease psoriasis. Variant rs4921493 associates Disease psoriasis. Variant rs1990760 associates Disease psoriasis. Variant rs12188351 associates Disease psoriasis. Variant rs1639110 x rs45533135 associates Disease psoriasis. Variant rs2517985 x rs13194571 associates Disease psoriasis. Variant rs34517439 associates Disease psoriasis. Variant rs2844624 x rs2523619 associates Disease psoriasis. Variant chr6: 138197824 associates Disease psoriasis. Variant rs6929464 x rs1639110 associates Disease psoriasis. Variant rs11795343 associates Disease psoriasis. Variant rs1576 x rs4358666 associates Disease psoriasis. Variant rs59827721 associates Disease psoriasis. Variant rs28512356 associates Disease psoriasis. Variant rs28894086 x rs1265078 associates Disease psoriasis. Variant rs2894207 x rs2534666 associates Disease psoriasis. Variant rs2076346 associates Disease psoriasis. Variant rs130069 x rs9267673 associates Disease psoriasis. Variant rs12191877 x rs2523708 associates Disease psoriasis. Variant rs6931633 x rs2853935 associates Disease psoriasis. \\nQuestion: Out of the given list, which Gene is associated with Takayasu's arteritis and psoriasis. Given list is: ABCG2, HLA-B, CACNA1C, RGS14, PTPN22\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989715.652711}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8fa7ac28cdf9324638e895f7b374a881/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8fa7ac28cdf9324638e895f7b374a881/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/8fa7ac28cdf9324638e895f7b374a881/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/908c2bd288c454b6342b450c12b609a4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/908c2bd288c454b6342b450c12b609a4/metadata.json new file mode 100644 index 0000000..9926f4c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/908c2bd288c454b6342b450c12b609a4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6068134307861328, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ankylosing spondylitis and anterior uveitis. Given list is: CFH, XBP1, ERAP1, SYT14, HNF1B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989886.9923327}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/908c2bd288c454b6342b450c12b609a4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/908c2bd288c454b6342b450c12b609a4/output.pkl Binary files differnew file mode 100644 index 0000000..bd5ca17 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/908c2bd288c454b6342b450c12b609a4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/90fc9e12655926bf0f0ec6c2c71420ff/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/90fc9e12655926bf0f0ec6c2c71420ff/metadata.json new file mode 100644 index 0000000..37a53b2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/90fc9e12655926bf0f0ec6c2c71420ff/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5696747303009033, "input_args": {"instruction": "'Context: Disease liver cirrhosis associates Gene SLC6A14. Gene MIR29B1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene SLC7A7. Gene MIR29B2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene SLC11A1. Disease liver cirrhosis associates Gene CYP7B1. Gene MIR29C associates Disease liver cirrhosis. Gene MIR29A associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CTNNB1. Disease liver cirrhosis associates Gene MUC5B. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene ATP6AP1. Gene MIR571 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene SLC51B. Gene MIR513A2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC51A. Gene MIR513A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene STX1A. Disease liver cirrhosis associates Gene SLC40A1. Variant rs2896019 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene TMEM237. Disease liver cirrhosis associates Gene TGFB1. Gene MIR99A associates Disease liver cirrhosis. Variant rs58542926 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene TCF4. Gene MIR23B associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC30A10. Variant rs78069066 associates Disease liver cirrhosis. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CFAP418. Disease liver cirrhosis associates Gene MPV17. Variant chr9:5073770 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene TYMS. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene GCLC. Disease liver cirrhosis associates Gene GSTM3. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PNPLA6. Gene MIR126 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene KIF3B. Disease liver cirrhosis associates Gene MMEL1. Gene MIR513B associates Disease liver cirrhosis. Gene MIR34A associates Disease liver cirrhosis. Gene MIR199A2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene TREX1. Disease liver cirrhosis associates Gene USB1. Gene MIR199A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene MIF. Gene MIR378A associates Disease liver cirrhosis. Gene MIR146A associates Disease liver cirrhosis. Gene MIR513C associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene DYNC2I1. Disease liver cirrhosis associates Gene SEMA4D. Disease liver cirrhosis associates Gene KIF12. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene DYNC2H1. Disease liver cirrhosis associates Gene TMEM107. Disease liver cirrhosis associates Gene TYMP. Disease liver cirrhosis associates Gene MKKS. Disease liver cirrhosis associates Gene GALT. Variant rs3129943 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene TSBP1. Disease liver cirrhosis associates Gene NOTCH1. Gene MIR133A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene USP53. Disease liver cirrhosis associates Gene MTTP. Disease liver cirrhosis associates Gene PIK3CA. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene SMAD4. Disease liver cirrhosis associates Gene CCDC28B. Gene MIRLET7B associates Disease uveal melanoma. Disease uveal melanoma associates Gene BRAF. Gene MIR145 associates Disease uveal melanoma. Variant rs12203592 associates Disease uveal melanoma. Disease uveal melanoma associates Gene CYSLTR2. Gene MIR454 associates Disease uveal melanoma. Variant rs762657413 associates Disease uveal melanoma. Gene MIR146A associates Disease uveal melanoma. Variant rs121913492 associates Disease uveal melanoma. Variant rs1057519853 associates Disease uveal melanoma. Variant rs1057519742 associates Disease uveal melanoma. Disease uveal melanoma associates Gene CLPTM1L. Variant rs1057519961 associates Disease uveal melanoma. Variant rs452932 associates Disease uveal melanoma. Disease uveal melanoma associates Gene IRF4. Gene MIR34A associates Disease uveal melanoma. \\nQuestion: Out of the given list, which Gene is associated with liver cirrhosis and uveal melanoma. Given list is: VAV3, PSCA, CACNA2D1, NTM, SULT1B1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989713.690932}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/90fc9e12655926bf0f0ec6c2c71420ff/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/90fc9e12655926bf0f0ec6c2c71420ff/output.pkl Binary files differnew file mode 100644 index 0000000..d8b3d1e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/90fc9e12655926bf0f0ec6c2c71420ff/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/915db9db00ffe349e467f85015c88df8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/915db9db00ffe349e467f85015c88df8/metadata.json new file mode 100644 index 0000000..04c3bca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/915db9db00ffe349e467f85015c88df8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7380673885345459, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with uveal melanoma and head and neck cancer. Given list is: USHBP1, BARD1, GNE, CACNA2D1, SAMM50'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048814.1355712}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/915db9db00ffe349e467f85015c88df8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/915db9db00ffe349e467f85015c88df8/output.pkl Binary files differnew file mode 100644 index 0000000..2707e9f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/915db9db00ffe349e467f85015c88df8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/921126ecfc762effc3820fdfaff7901a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/921126ecfc762effc3820fdfaff7901a/metadata.json new file mode 100644 index 0000000..7a219e6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/921126ecfc762effc3820fdfaff7901a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.597886323928833, "input_args": {"instruction": "\"Context: Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene HLA-DQB2. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DOB. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Variant HLAB*1501 associates Disease Takayasu's arteritis. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Variant HLAB*1302 associates Disease Takayasu's arteritis. Variant rs10919543 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Disease Takayasu's arteritis associates Gene ABHD16A. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs9266745 associates Disease Takayasu's arteritis. Variant chr6:31570670 associates Disease Takayasu's arteritis. Variant rs28834970 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VWA7. Variant rs17193507 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant rs12526858 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene RNF5. Variant rs76457959 associates Disease Takayasu's arteritis. Variant rs61444472 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene MSH5. Variant rs117298325 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VPS8. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs1383258 associates Disease Takayasu's arteritis. Variant rs2099684 associates Disease Takayasu's arteritis.. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Variant rs142765674 associates Disease herpes zoster. Variant rs541558502 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Variant rs117171752 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Variant rs147482218 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT1. Variant rs765885335 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease herpes zoster associates Gene FAM110B. Variant rs75640364 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT3. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene POLR3A. Disease herpes zoster localizes Anatomy temporal artery. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster presents Symptom Hyperesthesia. Disease granulomatous angiitis resembles Disease herpes zoster. Disease central nervous system vasculitis resembles Disease herpes zoster. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster localizes Anatomy spinal cord. Compound Mycophenolate mofetil contraindicates Disease herpes zoster. Disease herpes zoster associates Gene LRRC32. Compound Mycophenolic acid contraindicates Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal nerve. Disease herpes zoster localizes Anatomy spinal nucleus of trigeminal nerve. Disease herpes zoster localizes Anatomy spinal nerve root. Disease herpes zoster localizes Anatomy skin of body. Disease myelitis resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy muscle of abdomen. Compound Tacrolimus contraindicates Disease herpes zoster. Disease herpes zoster localizes Anatomy cornea. Disease herpes zoster presents Symptom Neuralgia. Compound Pregabalin treats Disease herpes zoster. Compound Famciclovir treats Disease herpes zoster. Disease herpes zoster presents Symptom Hypesthesia. \\nQuestion: Out of the given list, which Gene is associated with Takayasu's arteritis and herpes zoster. Given list is: HLA-B, STAT6, HLA-DQA1, HBB, CFH\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047701.0211656}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/921126ecfc762effc3820fdfaff7901a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/921126ecfc762effc3820fdfaff7901a/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/921126ecfc762effc3820fdfaff7901a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9297b9c2a029e07a99eb3b31807b3cdd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9297b9c2a029e07a99eb3b31807b3cdd/metadata.json new file mode 100644 index 0000000..f08b21b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9297b9c2a029e07a99eb3b31807b3cdd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6372635364532471, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and central nervous system cancer. Given list is: FER, CACNA1D, COL22A1, TNFSF15, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048067.8960154}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9297b9c2a029e07a99eb3b31807b3cdd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9297b9c2a029e07a99eb3b31807b3cdd/output.pkl Binary files differnew file mode 100644 index 0000000..50b5a85 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9297b9c2a029e07a99eb3b31807b3cdd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/92d7794cb34c54ef13457b4d5ba885aa/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/92d7794cb34c54ef13457b4d5ba885aa/metadata.json new file mode 100644 index 0000000..3c6e58d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/92d7794cb34c54ef13457b4d5ba885aa/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5696310997009277, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and cutaneous lupus erythematosus. Given list is: PTPN22, HLA-DQA1, CACNB2, CCDC33, IL2RA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989650.3042068}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/92d7794cb34c54ef13457b4d5ba885aa/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/92d7794cb34c54ef13457b4d5ba885aa/output.pkl Binary files differnew file mode 100644 index 0000000..b474698 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/92d7794cb34c54ef13457b4d5ba885aa/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/934f1c8617266a99f82365b97f5c04ba/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/934f1c8617266a99f82365b97f5c04ba/metadata.json new file mode 100644 index 0000000..b6c8202 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/934f1c8617266a99f82365b97f5c04ba/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5603599548339844, "input_args": {"instruction": "'Context: Disease lung carcinoma associates Gene TERT. Disease lung carcinoma associates Gene BTN3A1. Variant rs895139219 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs549219764 associates Disease lung carcinoma. Variant rs11878604 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Disease lung carcinoma associates Gene BRCA2. Variant rs557241012 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs55781567 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs66759488 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs4946256 associates Disease lung carcinoma. Gene MIR196A2 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs66488313 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs113488022 associates Disease lung carcinoma. Variant rs139789464 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs3999544 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs144943614 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Variant rs374787445 associates Disease lung carcinoma. Gene MIR570 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TNXB. Variant rs121913530 associates Disease lung carcinoma. Variant rs121913355 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs9387478 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs1584190119 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs75932146 associates Disease lung carcinoma. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs17356907 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs11374964 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Variant rs149934734 associates Disease estrogen-receptor negative breast cancer. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs67931591 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene BRCA2. Variant rs10771399 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs16991615 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene L3MBTL3. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and estrogen-receptor negative breast cancer. Given list is: SAMD9L, BTNL2, TERT, TERT, STAT4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048806.3803558}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/934f1c8617266a99f82365b97f5c04ba/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/934f1c8617266a99f82365b97f5c04ba/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/934f1c8617266a99f82365b97f5c04ba/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/93e533afe023e25cfc80433282c2768f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/93e533afe023e25cfc80433282c2768f/metadata.json new file mode 100644 index 0000000..af0aade --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/93e533afe023e25cfc80433282c2768f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5142049789428711, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with cutaneous lupus erythematosus and autoimmune hepatitis. Given list is: rs1937450, rs2187668, rs6010620, rs2231142, rs10455872'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048992.3559098}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/93e533afe023e25cfc80433282c2768f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/93e533afe023e25cfc80433282c2768f/output.pkl Binary files differnew file mode 100644 index 0000000..1b81325 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/93e533afe023e25cfc80433282c2768f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9488fc180f35a06334c8d0343d11498a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9488fc180f35a06334c8d0343d11498a/metadata.json new file mode 100644 index 0000000..d129917 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9488fc180f35a06334c8d0343d11498a/metadata.json @@ -0,0 +1 @@ +{"duration": 24.91264581680298, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with rheumatoid arthritis and vitiligo. Given list is: rs7176508, rs11675342, rs3018362, rs6426833, rs2476601'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048922.2802207}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9488fc180f35a06334c8d0343d11498a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9488fc180f35a06334c8d0343d11498a/output.pkl Binary files differnew file mode 100644 index 0000000..f167168 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9488fc180f35a06334c8d0343d11498a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/949cbfe8527411d7b16178385f6d022c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/949cbfe8527411d7b16178385f6d022c/metadata.json new file mode 100644 index 0000000..016ee89 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/949cbfe8527411d7b16178385f6d022c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.38118457794189453, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and lung carcinoma. Given list is: BTN2A1, BRCA2, STAT3, TERT, TFAP2B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988596.1092257}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/949cbfe8527411d7b16178385f6d022c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/949cbfe8527411d7b16178385f6d022c/output.pkl Binary files differnew file mode 100644 index 0000000..3e8cefe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/949cbfe8527411d7b16178385f6d022c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/94a30276dcac53d9c4fb67d1c6521536/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/94a30276dcac53d9c4fb67d1c6521536/metadata.json new file mode 100644 index 0000000..300fbcb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/94a30276dcac53d9c4fb67d1c6521536/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7646942138671875, "input_args": {"instruction": "'Context: Disease wheat allergy associates Gene RBFOX1. Variant rs9271588 associates Disease wheat allergy.. Variant rs59325236 associates Disease wheat allergy. Variant HLA-DPB2*01:01:02 associates Disease wheat allergy. Variant rs3132468 associates Disease dengue hemorrhagic fever.. Variant rs3765524 associates Disease dengue hemorrhagic fever. Disease dengue hemorrhagic fever associates Gene PLCE1. Disease dengue hemorrhagic fever associates Gene MICB. Disease dengue hemorrhagic fever presents Symptom Fever. Disease dengue hemorrhagic fever presents Symptom Diarrhea. Disease dengue hemorrhagic fever presents Symptom Fever of Unknown Origin. Disease dengue hemorrhagic fever presents Symptom Headache. Disease ontology identifier of dengue hemorrhagic fever is DOID:12206. \\nQuestion: Out of the given list, which Gene is associated with wheat allergy and dengue hemorrhagic fever. Given list is: NEURL1, DLEU7, DMRT1, ADGRG6, RBFOX1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047887.296578}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/94a30276dcac53d9c4fb67d1c6521536/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/94a30276dcac53d9c4fb67d1c6521536/output.pkl Binary files differnew file mode 100644 index 0000000..b2c333a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/94a30276dcac53d9c4fb67d1c6521536/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95bc61ff1af13640a71936c0419edb46/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95bc61ff1af13640a71936c0419edb46/metadata.json new file mode 100644 index 0000000..33407b9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95bc61ff1af13640a71936c0419edb46/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6767659187316895, "input_args": {"instruction": "'Context: Disease oropharynx cancer associates Gene HLA-DQB1. Variant rs9266329 associates Disease oropharynx cancer. Variant rs189602139 associates Disease oropharynx cancer. Variant rs1229984 associates Disease oropharynx cancer. Variant rs28418426 associates Disease oropharynx cancer. Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR3909 associates Disease rheumatic heart disease. Variant rs10794501 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Gene MIR205 associates Disease rheumatic heart disease. Gene MIR1299 associates Disease rheumatic heart disease. Disease rheumatic heart disease resembles Disease pharyngitis. Disease ontology identifier of rheumatic heart disease is DOID:0050827. \\nQuestion: Out of the given list, which Gene is associated with oropharynx cancer and rheumatic heart disease. Given list is: DENND1A, HLA-DQB1, VRK2, TERT, CACNA1A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047771.2360747}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95bc61ff1af13640a71936c0419edb46/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95bc61ff1af13640a71936c0419edb46/output.pkl Binary files differnew file mode 100644 index 0000000..b4aaa34 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95bc61ff1af13640a71936c0419edb46/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95c2d332f471742502b92eb6e450a7b5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95c2d332f471742502b92eb6e450a7b5/metadata.json new file mode 100644 index 0000000..06d1aa8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95c2d332f471742502b92eb6e450a7b5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8494138717651367, "input_args": {"instruction": "'Context: Variant rs61835088 associates Disease cocaine dependence.. Disease cocaine dependence associates Gene FAM53B. Disease cocaine dependence associates Gene FAM78B. Variant rs2825295 associates Disease cocaine dependence. Variant rs2629540 associates Disease cocaine dependence. Disease cocaine dependence localizes Anatomy strand of hair. Compound (1S,2S,6R,14R,15S,16R)-5-(cyclopropylmethyl)-16-[(2S)-2-hydroxy-3,3-dimethylbutan-2-yl]-15-methoxy-13-oxa-5-azahexacyclo[13.2.2.12,8.01,6.02,14.012,20]icosa-8(20),9,11-trien-11-ol treats Disease cocaine dependence. Disease ontology identifier of cocaine dependence is DOID:9975. Compound Nefazodone treats Disease cocaine dependence. Disease cocaine dependence presents Symptom Athetosis. Disease cocaine dependence localizes Anatomy brain. Disease cocaine dependence presents Symptom Akathisia, Drug-Induced. Disease cocaine dependence isa Disease drug dependence. Disease cocaine dependence presents Symptom Memory Disorders. Variant rs143149578 associates Disease androgenic alopecia. Disease androgenic alopecia associates Gene SLC14A2. Variant rs11694173 associates Disease androgenic alopecia. Variant rs11593840 associates Disease androgenic alopecia. Variant rs35892873 associates Disease androgenic alopecia. Variant rs572756998 associates Disease androgenic alopecia. Variant rs11037975 associates Disease androgenic alopecia. Variant rs9282858 associates Disease androgenic alopecia. Variant rs6047844 associates Disease androgenic alopecia. Variant rs4679956 associates Disease androgenic alopecia. Variant rs9314998 associates Disease androgenic alopecia. Variant chr17:43947866 associates Disease androgenic alopecia. Variant rs115182912 associates Disease androgenic alopecia. Variant rs191648835 associates Disease androgenic alopecia. Variant rs12203592 associates Disease androgenic alopecia. Variant rs11087368 associates Disease androgenic alopecia. Variant rs62146540 associates Disease androgenic alopecia. Variant rs144149795 associates Disease androgenic alopecia. Variant rs7061504 associates Disease androgenic alopecia. Variant rs1160312 associates Disease androgenic alopecia. Variant rs8085664 associates Disease androgenic alopecia. Variant rs185597083 associates Disease androgenic alopecia. Variant rs1704529 associates Disease androgenic alopecia. Variant rs5934505 associates Disease androgenic alopecia. Variant rs71421546 associates Disease androgenic alopecia. Variant rs12902958 associates Disease androgenic alopecia. Variant rs9357047 associates Disease androgenic alopecia. Variant rs3781458 associates Disease androgenic alopecia. Variant rs9287638 associates Disease androgenic alopecia. Variant rs3781452 associates Disease androgenic alopecia. Variant rs34991987 associates Disease androgenic alopecia. Variant rs182973285 associates Disease androgenic alopecia. Variant rs6546334 associates Disease androgenic alopecia. Variant rs200644307 associates Disease androgenic alopecia. Variant rs74333950 associates Disease androgenic alopecia. Variant rs62385385 associates Disease androgenic alopecia. \\nQuestion: Out of the given list, which Gene is associated with cocaine dependence and androgenic alopecia. Given list is: ATG5, ADGRV1, NEURL1, SLC14A2, HLA-DPB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047823.4842134}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95c2d332f471742502b92eb6e450a7b5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95c2d332f471742502b92eb6e450a7b5/output.pkl Binary files differnew file mode 100644 index 0000000..359deae --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/95c2d332f471742502b92eb6e450a7b5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96372000016da91694e58074a19f2970/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96372000016da91694e58074a19f2970/metadata.json new file mode 100644 index 0000000..54a1b3e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96372000016da91694e58074a19f2970/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6806323528289795, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with nephrotic syndrome and autoimmune hepatitis. Given list is: TNIP1, CACNA1C, SLC2A9, HLA-DQB1, CSNK2B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990129.8139277}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96372000016da91694e58074a19f2970/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96372000016da91694e58074a19f2970/output.pkl Binary files differnew file mode 100644 index 0000000..a6c422a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96372000016da91694e58074a19f2970/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96c98fe5fc4ffee13b8010f788c6f82c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96c98fe5fc4ffee13b8010f788c6f82c/metadata.json new file mode 100644 index 0000000..32f9b64 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96c98fe5fc4ffee13b8010f788c6f82c/metadata.json @@ -0,0 +1 @@ +{"duration": 7.379918336868286, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and psoriatic arthritis. Given list is: HLA-B, FAM227B, RP1, FTO, KIF1B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048294.748969}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96c98fe5fc4ffee13b8010f788c6f82c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96c98fe5fc4ffee13b8010f788c6f82c/output.pkl Binary files differnew file mode 100644 index 0000000..d61c239 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96c98fe5fc4ffee13b8010f788c6f82c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ccceee3b71ec097180c59453976e59/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ccceee3b71ec097180c59453976e59/metadata.json new file mode 100644 index 0000000..f9d2d5d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ccceee3b71ec097180c59453976e59/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4832112789154053, "input_args": {"instruction": "'Context: Variant rs570295933 associates Disease lung cancer. Gene MIR412 associates Disease lung cancer. Gene MIR328 associates Disease lung cancer. Gene MIR1323 associates Disease lung cancer. Gene MIR124-3 associates Disease lung cancer. Variant rs41293465 associates Disease lung cancer. Variant rs1057519784 associates Disease lung cancer. Gene SLC34A2 expressedin Disease lung cancer. Gene MIR423 associates Disease lung cancer. Gene MIR9-3 associates Disease lung cancer. Disease lung cancer associates Gene SLC22A18. Gene MIR411 associates Disease lung cancer. Gene MIR410 associates Disease lung cancer. Gene MIR132 associates Disease lung cancer. Gene MIR326 associates Disease lung cancer. Gene MIR141 associates Disease lung cancer. Gene MIR129-2 associates Disease lung cancer. Variant rs143884981 associates Disease lung cancer. Gene MIR513A2 associates Disease lung cancer. Gene MIR101-2 associates Disease lung cancer. Gene SLC2A1 marker Disease lung cancer. Gene MIR1-2 associates Disease lung cancer. Gene SLC1A7 expressedin Disease lung cancer. Gene MIR324 associates Disease lung cancer. Variant rs531398630 associates Disease lung cancer. Gene SLC46A2 expressedin Disease lung cancer. Gene MIR522 associates Disease lung cancer. Gene SLC22A31 expressedin Disease lung cancer. Variant rs17337514 associates Disease lung cancer. Gene MIR152 associates Disease lung cancer. Variant chr19:54599348 associates Disease lung carcinoma. Disease lung carcinoma associates Gene HLA-DQA1. Gene MIR328 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Disease lung carcinoma associates Gene SLC17A4. Variant rs116461399 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs34244947 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Disease lung carcinoma associates Gene IRF4. Gene MIR570 associates Disease lung carcinoma. Gene MIR15B associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs13212562 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs16832404 x rs2562796 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Gene MIR31 associates Disease lung carcinoma. Disease interstitial lung disease associates Gene CSF2RB. Disease interstitial lung disease associates Gene CSF2RA. Disease interstitial lung disease associates Gene SLC6A14. Disease interstitial lung disease associates Gene SLC34A1. Disease interstitial lung disease associates Gene SLC34A2. Variant rs116906005 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SLC26A9. Variant rs116483731 associates Disease interstitial lung disease. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene NPC2. Variant rs2076295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene HLA-B. Disease interstitial lung disease associates Gene ZCCHC8. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene TERT. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ZNFX1. Variant rs12702634 associates Disease interstitial lung disease. Variant rs2609255 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene OFD1. Variant rs6477542 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA1. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene CASP10. Disease interstitial lung disease associates Gene NKX2-1. Variant rs6631122 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene IL2RA. Disease interstitial lung disease associates Gene IL2RB. Variant rs4727443 associates Disease interstitial lung disease. Disease ontology identifier of lung non-squamous non-small cell carcinoma is DOID:0080521. Variant rs121913430 associates Disease lung non-small cell carcinoma. Variant rs397516982 associates Disease lung non-small cell carcinoma. Variant rs121913420 associates Disease lung non-small cell carcinoma. Variant rs121913432 associates Disease lung non-small cell carcinoma. Variant rs397517114 associates Disease lung non-small cell carcinoma. Variant rs397516981 associates Disease lung non-small cell carcinoma. Gene MIR152 associates Disease lung non-small cell carcinoma. Variant rs121913428 associates Disease lung non-small cell carcinoma. Variant rs121913231 associates Disease lung non-small cell carcinoma. Variant rs4236709 associates Disease lung non-small cell carcinoma. Variant rs397517106 associates Disease lung non-small cell carcinoma. Variant rs2293607 associates Disease lung non-small cell carcinoma. Variant rs121913427 associates Disease lung non-small cell carcinoma. Variant rs121913281 associates Disease lung non-small cell carcinoma. Gene MIR411 associates Disease lung non-small cell carcinoma. Disease lung non-small cell carcinoma associates Gene ZNRF3. Variant rs12296850 associates Disease lung non-small cell carcinoma. Variant rs1057519782 associates Disease lung non-small cell carcinoma. Variant rs121913250 associates Disease lung non-small cell carcinoma. Variant rs121909219 associates Disease lung non-small cell carcinoma. Variant rs121913229 associates Disease lung non-small cell carcinoma. Variant rs121913254 associates Disease lung non-small cell carcinoma. Variant rs1057519784 associates Disease lung non-small cell carcinoma. Variant rs397517112 associates Disease lung non-small cell carcinoma. Variant rs397516980 associates Disease lung non-small cell carcinoma. Gene MIR132 associates Disease lung non-small cell carcinoma. Variant rs200595745 associates Disease lung non-small cell carcinoma. Variant rs1057519790 associates Disease lung non-small cell carcinoma. Variant rs1057519786 associates Disease lung non-small cell carcinoma. Variant rs1057519785 associates Disease lung non-small cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and central nervous system cancer. Given list is: FGFR2, TERT, HLA-DQA1, GTF2I, SLC14A2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988550.036507}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ccceee3b71ec097180c59453976e59/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ccceee3b71ec097180c59453976e59/output.pkl Binary files differnew file mode 100644 index 0000000..4451ef9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ccceee3b71ec097180c59453976e59/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ff31926dc8701d119bcae5fd291ab4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ff31926dc8701d119bcae5fd291ab4/metadata.json new file mode 100644 index 0000000..d54310b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ff31926dc8701d119bcae5fd291ab4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6310877799987793, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with duodenal ulcer and gastric fundus cancer. Given list is: rs2294008, rs10490924, rs2738048, rs711830, rs167479'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048932.9374368}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ff31926dc8701d119bcae5fd291ab4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ff31926dc8701d119bcae5fd291ab4/output.pkl Binary files differnew file mode 100644 index 0000000..82cc191 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/96ff31926dc8701d119bcae5fd291ab4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/977d14c1f53dd3b612685bbbbc39edba/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/977d14c1f53dd3b612685bbbbc39edba/metadata.json new file mode 100644 index 0000000..f4ab379 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/977d14c1f53dd3b612685bbbbc39edba/metadata.json @@ -0,0 +1 @@ +{"duration": 0.809074878692627, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and oral cavity cancer. Given list is: CACNA2D1, HLF, SULT1B1, HLA-DQB1, DLEU7'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047682.832063}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/977d14c1f53dd3b612685bbbbc39edba/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/977d14c1f53dd3b612685bbbbc39edba/output.pkl Binary files differnew file mode 100644 index 0000000..1994abb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/977d14c1f53dd3b612685bbbbc39edba/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/981bca3c8060e19fb6f58b42f2c50792/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/981bca3c8060e19fb6f58b42f2c50792/metadata.json new file mode 100644 index 0000000..ddd7871 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/981bca3c8060e19fb6f58b42f2c50792/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6941652297973633, "input_args": {"instruction": "'Context: Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs11554290 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene ATM. Gene MIR101-1 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs11591710 associates Disease lung adenocarcinoma. Variant rs371769427 associates Disease lung adenocarcinoma. Variant rs113488022 associates Disease lung adenocarcinoma. Variant rs11610143 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs786203071 associates Disease lung adenocarcinoma. Variant rs28408315 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs3117582 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs786201059 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs121913385 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs530941076 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene BAZ1A. Variant rs11540652 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs786202962 associates Disease lung adenocarcinoma. Variant rs28929495 associates Disease lung adenocarcinoma. Variant rs786201057 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs11554273 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121912660 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs28933406 associates Disease lung adenocarcinoma. Variant rs28931589 associates Disease lung adenocarcinoma. Variant rs121913279 associates Disease lung adenocarcinoma. Variant rs121912655 associates Disease lung adenocarcinoma. Variant rs786203436 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene BPTF. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs180177040 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs786201419 associates Disease lung adenocarcinoma. Disease myeloproliferative neoplasm associates Gene ATM. Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene THPO.. Disease myeloproliferative neoplasm associates Gene JAK2. Disease myeloproliferative neoplasm associates Gene TET2. Disease myeloproliferative neoplasm associates Gene CALR. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene MECOM. Disease myeloproliferative neoplasm associates Gene ORAI1. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and myeloproliferative neoplasm. Given list is: TG, CACNB2, PRKAA1, TERT, CACNA1S'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048362.8284597}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/981bca3c8060e19fb6f58b42f2c50792/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/981bca3c8060e19fb6f58b42f2c50792/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/981bca3c8060e19fb6f58b42f2c50792/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98b885802e524fa73deefa5ccf956950/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98b885802e524fa73deefa5ccf956950/metadata.json new file mode 100644 index 0000000..32d7572 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98b885802e524fa73deefa5ccf956950/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7197906970977783, "input_args": {"instruction": "'Context: Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene ATM. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene THPO.. Disease myeloproliferative neoplasm associates Gene JAK2. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TERT. Gene MIR146B associates Disease myeloproliferative neoplasm. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs11591710 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs150036236 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs1057519785 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs3117582 associates Disease lung adenocarcinoma. Variant rs121913385 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs11554290 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs11540652 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs1057519881 associates Disease lung adenocarcinoma. Variant rs1057519781 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs113488022 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs1057519786 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs1057519782 associates Disease lung adenocarcinoma. Variant rs121913351 associates Disease lung adenocarcinoma. Variant rs121913331 associates Disease lung adenocarcinoma. Variant rs11610143 associates Disease lung adenocarcinoma. Variant rs1057519895 associates Disease lung adenocarcinoma. Variant rs28408315 associates Disease lung adenocarcinoma. Variant rs1057519731 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs1057519728 associates Disease lung adenocarcinoma. Variant rs1057519788 associates Disease lung adenocarcinoma. Variant rs1057519816 associates Disease lung adenocarcinoma. Variant rs1057520012 associates Disease lung adenocarcinoma. Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs1057520005 associates Disease lung adenocarcinoma. Variant rs1057519985 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs1057520001 associates Disease lung adenocarcinoma. Variant rs863224451 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs1057519982 associates Disease lung adenocarcinoma. Variant rs121913355 associates Disease lung adenocarcinoma. Variant rs1057519984 associates Disease lung adenocarcinoma. Variant rs1057520004 associates Disease lung adenocarcinoma. Variant rs587781288 associates Disease lung adenocarcinoma. Variant rs1057519787 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs1057520002 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and lung adenocarcinoma. Given list is: SLC17A4, STAT6, HLA-DQB1, TERT, PRX'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047838.8686972}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98b885802e524fa73deefa5ccf956950/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98b885802e524fa73deefa5ccf956950/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98b885802e524fa73deefa5ccf956950/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98c6b19007cfe53f2b87b6448755c4be/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98c6b19007cfe53f2b87b6448755c4be/metadata.json new file mode 100644 index 0000000..65eb57a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98c6b19007cfe53f2b87b6448755c4be/metadata.json @@ -0,0 +1 @@ +{"duration": 1.07403564453125, "input_args": {"instruction": "'Context: Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene TNFRSF13B. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene C4B. Disease autoimmune disease associates Gene NLRP1. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene C4A. Disease autoimmune disease associates Gene IL10RA. Disease autoimmune disease associates Gene TNFRSF13C. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene FCGR2B. Disease autoimmune disease associates Gene NFKB2. Disease autoimmune disease associates Gene IL12B. Disease autoimmune disease associates Gene NFKB1. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene IL6R. Disease autoimmune disease associates Gene SLC26A4. Disease autoimmune disease associates Gene ITGAM. Disease autoimmune disease associates Gene TNFSF4. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene HLA-DRA. Disease autoimmune disease associates Gene IL1RN. Disease autoimmune disease associates Gene TNFAIP3. Disease autoimmune disease associates Gene SAA1. Disease autoimmune disease associates Gene CCL2. Disease autoimmune disease associates Gene IL13. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene IL1B. Disease autoimmune disease associates Gene XRCC6.. Disease autoimmune disease associates Gene CARD9. Disease autoimmune disease associates Gene CCL21. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene NFKBIL1. Disease autoimmune disease associates Gene DNASE1. Disease autoimmune disease associates Gene DNASE1L3. Disease autoimmune disease associates Gene IL1A. Disease autoimmune disease associates Gene TLR5. Disease autoimmune disease associates Gene MEFV. Disease autoimmune disease associates Gene NOS3. Disease autoimmune disease associates Gene SAA2. Disease autoimmune disease associates Gene IL4. Disease autoimmune disease associates Gene NLRP3. Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene TLR4. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene PTPN22. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene SH2D1A. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene TNFRSF13C. Disease vasculitis associates Gene WAS. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene SLC22A4. Disease vasculitis associates Gene IRF2BP2. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene PNP. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene IFNGR1. Disease vasculitis associates Gene C4A. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene SAA2. Disease ontology identifier of vasculitis is DOID:865. Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene TLR4. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene PTPN22. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene SH2D1A. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene TNFRSF13C. Disease vasculitis associates Gene WAS. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene SLC22A4. Disease vasculitis associates Gene IRF2BP2. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene PNP. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene IFNGR1. Disease vasculitis associates Gene C4A. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene SAA2. Disease ontology identifier of vasculitis is DOID:865. \\nQuestion: Out of the given list, which Variant is associated with autoimmune disease and anti-neutrophil antibody associated vasculitis. Given list is: rs2310752, rs7528604, rs6679677, rs34691223, rs2963222'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050486.9241037}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98c6b19007cfe53f2b87b6448755c4be/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98c6b19007cfe53f2b87b6448755c4be/output.pkl Binary files differnew file mode 100644 index 0000000..a4c98ff --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98c6b19007cfe53f2b87b6448755c4be/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98efc127c695e8babf8bf74a3dbd6af5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98efc127c695e8babf8bf74a3dbd6af5/metadata.json new file mode 100644 index 0000000..8245271 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98efc127c695e8babf8bf74a3dbd6af5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5571777820587158, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with dengue hemorrhagic fever and wheat allergy. Given list is: RBFOX1, EPDR1, BABAM1, PTPN22, WNT4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989945.010808}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98efc127c695e8babf8bf74a3dbd6af5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98efc127c695e8babf8bf74a3dbd6af5/output.pkl Binary files differnew file mode 100644 index 0000000..cad7502 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98efc127c695e8babf8bf74a3dbd6af5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98feb48df2a0823ada5393cac6143bec/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98feb48df2a0823ada5393cac6143bec/metadata.json new file mode 100644 index 0000000..8aeab71 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98feb48df2a0823ada5393cac6143bec/metadata.json @@ -0,0 +1 @@ +{"duration": 9.281085729598999, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with abdominal aortic aneurysm and thoracic aortic aneurysm. Given list is: rs11675342, rs595244, rs3018362, rs11651755, rs1709393'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048861.2403655}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98feb48df2a0823ada5393cac6143bec/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98feb48df2a0823ada5393cac6143bec/output.pkl Binary files differnew file mode 100644 index 0000000..9890ba8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/98feb48df2a0823ada5393cac6143bec/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9919252432fcbd7c246689b701f79070/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9919252432fcbd7c246689b701f79070/metadata.json new file mode 100644 index 0000000..bf407b3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9919252432fcbd7c246689b701f79070/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4904134273529053, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with neuromyelitis optica and neurotic disorder. Given list is: TNRC18, PCDH7, CASZ1, GATA3, TNXB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989892.823758}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9919252432fcbd7c246689b701f79070/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9919252432fcbd7c246689b701f79070/output.pkl Binary files differnew file mode 100644 index 0000000..1e49fc8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9919252432fcbd7c246689b701f79070/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/994adc49ddd06a0073eec41845485e0d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/994adc49ddd06a0073eec41845485e0d/metadata.json new file mode 100644 index 0000000..4b58a55 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/994adc49ddd06a0073eec41845485e0d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5660097599029541, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with age-related hearing impairment and keratinocyte carcinoma\"@e. Given list is: rs259919, rs2503199, rs325485, rs1126809, rs229541'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050488.0258322}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/994adc49ddd06a0073eec41845485e0d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/994adc49ddd06a0073eec41845485e0d/output.pkl Binary files differnew file mode 100644 index 0000000..55578c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/994adc49ddd06a0073eec41845485e0d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9961952def0ce5c7ed19452e20adb58c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9961952def0ce5c7ed19452e20adb58c/metadata.json new file mode 100644 index 0000000..cb36bd1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9961952def0ce5c7ed19452e20adb58c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7058322429656982, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Takayasu's arteritis and myelodysplastic syndrome. Given list is: CCDC33, PCDH15, RBFOX1, HLA-B, ERAP1\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989716.3640225}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9961952def0ce5c7ed19452e20adb58c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9961952def0ce5c7ed19452e20adb58c/output.pkl Binary files differnew file mode 100644 index 0000000..70be917 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9961952def0ce5c7ed19452e20adb58c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9cabfb86469d935c41821e28d64e13fc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9cabfb86469d935c41821e28d64e13fc/metadata.json new file mode 100644 index 0000000..58466e8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9cabfb86469d935c41821e28d64e13fc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6136288642883301, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and lung carcinoma. Given list is: ABCG2, GATA3, TP53, TERT, PLA2G6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048078.0412111}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9cabfb86469d935c41821e28d64e13fc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9cabfb86469d935c41821e28d64e13fc/output.pkl Binary files differnew file mode 100644 index 0000000..b4329d0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9cabfb86469d935c41821e28d64e13fc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d4b44d1f508631cd9bd797e930837d0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d4b44d1f508631cd9bd797e930837d0/metadata.json new file mode 100644 index 0000000..37a34ca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d4b44d1f508631cd9bd797e930837d0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6355085372924805, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with systemic scleroderma and myositis. Given list is: HLA-DPB1, STAT4, UGT1A9, HLA-DQA1, TNRC6B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047942.5938864}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d4b44d1f508631cd9bd797e930837d0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d4b44d1f508631cd9bd797e930837d0/output.pkl Binary files differnew file mode 100644 index 0000000..9bf05d9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d4b44d1f508631cd9bd797e930837d0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d6169ec29e3e3e433c5dee01317ffd9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d6169ec29e3e3e433c5dee01317ffd9/metadata.json new file mode 100644 index 0000000..5de4525 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d6169ec29e3e3e433c5dee01317ffd9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5759267807006836, "input_args": {"instruction": "\"Context: Variant rs1801274 associates Disease ankylosing spondylitis. Variant rs4676410 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs1250550 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs13001372 associates Disease ankylosing spondylitis. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Variant rs8070463 associates Disease ankylosing spondylitis. Variant rs17192932 associates Disease ankylosing spondylitis. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs12141575 associates Disease ankylosing spondylitis. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs6871626 associates Disease ankylosing spondylitis. Variant rs4129267 associates Disease ankylosing spondylitis. Variant rs2910686 associates Disease ankylosing spondylitis. Variant rs2297909 associates Disease ankylosing spondylitis. Variant rs11249215 associates Disease ankylosing spondylitis. Variant rs117486637 associates Disease ankylosing spondylitis. Variant rs6556416 associates Disease ankylosing spondylitis. Variant rs17765610 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs11190133 associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Variant rs1128905 associates Disease ankylosing spondylitis. Variant rs12615545 associates Disease ankylosing spondylitis. Variant rs6600247 associates Disease ankylosing spondylitis. Variant rs2394250 associates Disease ankylosing spondylitis. Variant rs378108 associates Disease ankylosing spondylitis. Variant rs27529 associates Disease ankylosing spondylitis. Variant rs61752717 associates Disease ankylosing spondylitis. Variant rs2242944 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Variant rs11624293 associates Disease ankylosing spondylitis. Variant rs27434 associates Disease ankylosing spondylitis. Variant rs10865331 associates Disease ankylosing spondylitis. Variant rs10045403 associates Disease ankylosing spondylitis. Variant rs7282490 associates Disease ankylosing spondylitis. Variant HLA-B*2705 associates Disease ankylosing spondylitis. Variant rs7743761 associates Disease ankylosing spondylitis. Variant rs12521868 associates Disease Crohn's disease. Variant rs113973829 associates Disease Crohn's disease. Variant rs1343151; rs12567232; rs2902440; rs11209003; rs2201841; rs1004819; rs11465804; rs6669582; rs10789230; rs11209002; rs2064689; rs11465802; rs10889677; rs11209026; rs10889676; rs9988642 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs2266959 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Variant rs2945412 associates Disease Crohn's disease. Variant rs28449958 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs1998598 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs415890 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs1432296 associates Disease Crohn's disease. Variant rs9271060 associates Disease Crohn's disease. Variant rs2058660 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs2823286 associates Disease Crohn's disease. Variant rs212389 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs2155219 associates Disease Crohn's disease. Variant rs148319899 associates Disease Crohn's disease. Variant rs212388 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs4263839 associates Disease Crohn's disease. Variant rs3197999 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs11879191 associates Disease Crohn's disease. Variant rs78898421 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs9525625 associates Disease Crohn's disease. Variant rs1260326 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs11465804 associates Disease Crohn's disease. Variant rs2062305 associates Disease Crohn's disease. Variant rs4957294 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs13204048 associates Disease Crohn's disease. Variant rs12677663 associates Disease Crohn's disease. Variant rs9286879 associates Disease Crohn's disease. Variant rs2836878 associates Disease Crohn's disease. Variant rs12663356 associates Disease Crohn's disease. Variant rs17694108 associates Disease Crohn's disease. Variant rs6651252 associates Disease Crohn's disease. Variant rs11175593 associates Disease Crohn's disease. Variant rs13407913 associates Disease Crohn's disease. Variant rs116392568 associates Disease Crohn's disease. Variant rs2538470 associates Disease Crohn's disease. Variant rs5763767 associates Disease Crohn's disease. Variant rs1842076 associates Disease Crohn's disease. Variant rs4821544 associates Disease Crohn's disease. Variant rs6738825 associates Disease Crohn's disease. Variant rs1250546 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs13428812 associates Disease Crohn's disease. Variant rs4266763 associates Disease Crohn's disease. Variant rs11195128 associates Disease Crohn's disease. Variant rs113653754 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs11741861 associates Disease Crohn's disease. Variant rs9258260 associates Disease Crohn's disease. Variant rs12422544 associates Disease Crohn's disease. Variant rs140068907 associates Disease Crohn's disease. Variant rs1250550 associates Disease Crohn's disease. Variant rs1250544 associates Disease Crohn's disease. Variant rs9297145 associates Disease Crohn's disease. Variant rs13204742 associates Disease Crohn's disease. Variant rs2382817 associates Disease Crohn's disease. \\nQuestion: Out of the given list, which Variant is associated with ankylosing spondylitis and Crohn's disease. Given list is: rs219780, rs11209026, rs1233491, rs1953126, rs2294008\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050462.4908774}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d6169ec29e3e3e433c5dee01317ffd9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d6169ec29e3e3e433c5dee01317ffd9/output.pkl Binary files differnew file mode 100644 index 0000000..4b6c0ad --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9d6169ec29e3e3e433c5dee01317ffd9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9e7693e9a46259fcb712921a3db7d09c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9e7693e9a46259fcb712921a3db7d09c/metadata.json new file mode 100644 index 0000000..b05487d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9e7693e9a46259fcb712921a3db7d09c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5686051845550537, "input_args": {"instruction": "'Context: Disease non-alcoholic fatty liver disease associates Gene PNPLA3. Variant rs11653507 associates Disease non-alcoholic fatty liver disease. Variant rs2070669 associates Disease non-alcoholic fatty liver disease. Variant rs4835021 associates Disease non-alcoholic fatty liver disease. Variant rs4604455 associates Disease non-alcoholic fatty liver disease. Variant rs598747 associates Disease non-alcoholic fatty liver disease. Variant rs9604818 associates Disease non-alcoholic fatty liver disease. Variant rs4819649 associates Disease non-alcoholic fatty liver disease. Variant rs9908820 associates Disease non-alcoholic fatty liver disease. Variant rs58489806 associates Disease non-alcoholic fatty liver disease. Variant rs4940694 associates Disease non-alcoholic fatty liver disease. Variant rs355910 associates Disease non-alcoholic fatty liver disease. Variant rs624698 associates Disease non-alcoholic fatty liver disease. Variant rs5764430 associates Disease non-alcoholic fatty liver disease. Variant rs9922619 associates Disease non-alcoholic fatty liver disease. Variant rs5021727 associates Disease non-alcoholic fatty liver disease. Variant rs5747734 associates Disease non-alcoholic fatty liver disease. Variant rs12454712 associates Disease non-alcoholic fatty liver disease. Variant rs17321515 associates Disease non-alcoholic fatty liver disease. Variant rs5752775 associates Disease non-alcoholic fatty liver disease. Variant rs1441764 associates Disease non-alcoholic fatty liver disease. Variant rs3760230 associates Disease non-alcoholic fatty liver disease. Variant rs6583826 associates Disease non-alcoholic fatty liver disease. Variant rs2980854 associates Disease non-alcoholic fatty liver disease. Variant rs12359178 associates Disease non-alcoholic fatty liver disease. Disease non-alcoholic fatty liver disease associates Gene HSPA4. Variant rs1150781 associates Disease non-alcoholic fatty liver disease. Variant rs571173399 associates Disease non-alcoholic fatty liver disease. Variant rs58542926 associates Disease non-alcoholic fatty liver disease. Variant chr17:66085081 associates Disease non-alcoholic fatty liver disease. Variant rs440454 associates Disease non-alcoholic fatty liver disease. Variant rs3747207 associates Disease non-alcoholic fatty liver disease. Variant rs429358 associates Disease non-alcoholic fatty liver disease. Variant rs9272699 associates Disease non-alcoholic fatty liver disease. Variant rs151288714 associates Disease non-alcoholic fatty liver disease. Variant rs2274685 associates Disease non-alcoholic fatty liver disease. Variant rs28657030 associates Disease non-alcoholic fatty liver disease. Variant rs6994124 associates Disease non-alcoholic fatty liver disease. Variant rs1044531 associates Disease non-alcoholic fatty liver disease. Variant rs2143571 associates Disease non-alcoholic fatty liver disease. Variant rs6510374 associates Disease non-alcoholic fatty liver disease. Variant rs492602 associates Disease non-alcoholic fatty liver disease. Variant rs1169289 associates Disease non-alcoholic fatty liver disease. Variant rs2954030 associates Disease non-alcoholic fatty liver disease. Variant rs13168878 associates Disease non-alcoholic fatty liver disease. Variant rs1694068 associates Disease non-alcoholic fatty liver disease. Variant rs41290534 associates Disease non-alcoholic fatty liver disease. Disease non-alcoholic steatohepatitis associates Gene PNPLA3. Variant rs12077210 associates Disease non-alcoholic steatohepatitis.. \\nQuestion: Out of the given list, which Gene is associated with non-alcoholic fatty liver disease and non-alcoholic steatohepatitis. Given list is: C5AR1, PNPLA3, ABCG2, BTC, UMPS'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047691.151118}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9e7693e9a46259fcb712921a3db7d09c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9e7693e9a46259fcb712921a3db7d09c/output.pkl Binary files differnew file mode 100644 index 0000000..f32c41b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9e7693e9a46259fcb712921a3db7d09c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9efb7cd61e6a7b374e7a12c8273d9cef/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9efb7cd61e6a7b374e7a12c8273d9cef/metadata.json new file mode 100644 index 0000000..efb73be --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9efb7cd61e6a7b374e7a12c8273d9cef/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6266214847564697, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with sclerosing cholangitis and Crohn's disease. Given list is: rs3197999, rs59325236, rs6444305, rs1122171, rs1314913\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048985.3865483}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9efb7cd61e6a7b374e7a12c8273d9cef/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9efb7cd61e6a7b374e7a12c8273d9cef/output.pkl Binary files differnew file mode 100644 index 0000000..48d8f53 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9efb7cd61e6a7b374e7a12c8273d9cef/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f322a941d4f94a88775a6489616d1a1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f322a941d4f94a88775a6489616d1a1/metadata.json new file mode 100644 index 0000000..54cf7e2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f322a941d4f94a88775a6489616d1a1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6427271366119385, "input_args": {"instruction": "'Context: Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene RPS18. Disease idiopathic pulmonary fibrosis associates Gene TERT. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Disease idiopathic pulmonary fibrosis associates Gene RTEL1. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs79684490 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene NPRL3. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs74614704 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene ABCA3. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant rs2013701 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and idiopathic pulmonary fibrosis. Given list is: CRTC1, TERT, ATG5, WNT10A, ULK4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989509.5901217}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f322a941d4f94a88775a6489616d1a1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f322a941d4f94a88775a6489616d1a1/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f322a941d4f94a88775a6489616d1a1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f3e5f013a297e3adc4571de58ca92dc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f3e5f013a297e3adc4571de58ca92dc/metadata.json new file mode 100644 index 0000000..8529518 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f3e5f013a297e3adc4571de58ca92dc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5503711700439453, "input_args": {"instruction": "'Context: Disease age related macular degeneration associates Gene CFB. Disease age related macular degeneration associates Gene CFH. Disease age related macular degeneration associates Gene C2. Disease age related macular degeneration associates Gene COL8A1. Disease age related macular degeneration associates Gene FBLN5. Disease age related macular degeneration associates Gene ERCC6. Disease age related macular degeneration associates Gene CFI. Disease age related macular degeneration associates Gene APOE. Disease age related macular degeneration associates Gene F13B. Variant rs76157638 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene ABCA4. Disease age related macular degeneration associates Gene CST3. Disease age related macular degeneration associates Gene ASPM. Disease age related macular degeneration associates Gene CFHR4. Disease age related macular degeneration associates Gene CFHR1. Disease age related macular degeneration associates Gene CFHR3. Disease age related macular degeneration associates Gene ALDH1A2. Disease age related macular degeneration associates Gene CFHR5. Disease age related macular degeneration associates Gene TIMP3. Disease age related macular degeneration associates Gene HERC2. Variant rs62642574 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene C9. Disease age related macular degeneration associates Gene TNFRSF10A. Disease age related macular degeneration associates Gene FRK. Disease age related macular degeneration associates Gene RAD51B. Disease age related macular degeneration associates Gene TLR4. Disease age related macular degeneration associates Gene NT5DC1. Disease age related macular degeneration associates Gene ARMS2. Disease age related macular degeneration associates Gene CX3CR1. Disease age related macular degeneration associates Gene C3. Disease age related macular degeneration associates Gene ELOVL4. Disease age related macular degeneration associates Gene COL10A1. Disease age related macular degeneration associates Gene FILIP1L. Disease Kuhnt-Junius degeneration associates Gene CFH. Disease Kuhnt-Junius degeneration associates Gene CFB. Variant rs10737680 associates Disease Kuhnt-Junius degeneration. Variant rs67538026 associates Disease Kuhnt-Junius degeneration. Variant rs570618 associates Disease Kuhnt-Junius degeneration. Variant rs8135665 associates Disease Kuhnt-Junius degeneration. Variant rs11884770 associates Disease Kuhnt-Junius degeneration. Variant rs10507047 associates Disease Kuhnt-Junius degeneration. Variant rs9564692 associates Disease Kuhnt-Junius degeneration. Variant rs61985136 associates Disease Kuhnt-Junius degeneration. Variant rs10490924 associates Disease Kuhnt-Junius degeneration. Variant rs5754227 associates Disease Kuhnt-Junius degeneration. Variant rs116503776 associates Disease Kuhnt-Junius degeneration. Variant rs35292876 associates Disease Kuhnt-Junius degeneration. Variant rs2070895 associates Disease Kuhnt-Junius degeneration. Variant rs114254831 associates Disease Kuhnt-Junius degeneration. Variant rs147859257 associates Disease Kuhnt-Junius degeneration. Variant rs58978565 associates Disease Kuhnt-Junius degeneration. Variant rs61941274 associates Disease Kuhnt-Junius degeneration. \\nQuestion: Out of the given list, which Gene is associated with age related macular degeneration and Kuhnt-Junius degeneration. Given list is: VAV3, UGT1A8, CFH, TP53, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047738.259124}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f3e5f013a297e3adc4571de58ca92dc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f3e5f013a297e3adc4571de58ca92dc/output.pkl Binary files differnew file mode 100644 index 0000000..8d7d05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f3e5f013a297e3adc4571de58ca92dc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f49d87f542022e8c85bbaff42a0f336/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f49d87f542022e8c85bbaff42a0f336/metadata.json new file mode 100644 index 0000000..8521fc1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f49d87f542022e8c85bbaff42a0f336/metadata.json @@ -0,0 +1 @@ +{"duration": 8.589834213256836, "input_args": {"instruction": "'Context: Variant rs2464195 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene TP53. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs56345976 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs149934734 associates Disease estrogen-receptor negative breast cancer. Variant rs616488 associates Disease estrogen-receptor negative breast cancer. Variant rs17356907 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs4849887 associates Disease estrogen-receptor negative breast cancer. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene ESR1. Disease estrogen-receptor negative breast cancer associates Gene TCF7L2. Variant rs67931591 associates Disease estrogen-receptor negative breast cancer. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs6569648 associates Disease estrogen-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and estrogen-receptor negative breast cancer. Given list is: TERT, KIT, DGKK, ATP2B1, IL6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989522.0150123}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f49d87f542022e8c85bbaff42a0f336/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f49d87f542022e8c85bbaff42a0f336/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f49d87f542022e8c85bbaff42a0f336/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f9fae14e737c07a4b2b07639585f1ed/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f9fae14e737c07a4b2b07639585f1ed/metadata.json new file mode 100644 index 0000000..123d290 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f9fae14e737c07a4b2b07639585f1ed/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5334243774414062, "input_args": {"instruction": "'Context: Variant chr9:5073770 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene MUC5B. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene SLC6A14. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene NOTCH1. Disease liver cirrhosis associates Gene SDCCAG8. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CLDN1. Disease liver cirrhosis associates Gene SLC7A7. Disease liver cirrhosis associates Gene GALT. Disease liver cirrhosis associates Gene TGFB1. Disease liver cirrhosis associates Gene NHP2. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene TP53. Variant rs551625260 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene STN1. Disease liver cirrhosis associates Gene JAG1. Disease liver cirrhosis associates Gene SLC40A1. Disease liver cirrhosis associates Gene DPM1. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene PIK3CA. Disease liver cirrhosis associates Gene DNASE2. Disease liver cirrhosis associates Gene SLC11A1. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene DCTN4. Disease liver cirrhosis associates Gene CYP7B1. Disease liver cirrhosis associates Gene CCDC115. Variant rs3129943 associates Disease liver cirrhosis. Variant rs12484700 associates Disease liver cirrhosis. Variant rs2896019 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene NPM1. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene CTNNB1. Disease liver cirrhosis associates Gene POU2AF1. Disease liver cirrhosis associates Gene DYNC2H1. Disease liver cirrhosis associates Gene SLC51A. Disease liver cirrhosis associates Gene PNPLA6. Disease liver cirrhosis associates Gene NOP10. Disease liver cirrhosis associates Gene ALDOB. Disease liver cirrhosis associates Gene SLC51B. Disease liver cirrhosis associates Gene SLC30A10. Disease liver cirrhosis associates Gene APOE. Variant rs58542926 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene LIG3. Disease liver cirrhosis associates Gene TYMS. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene HAMP. Gene MIR513A2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene NGLY1. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene PHKG2. Variant rs6834314 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CTC1. Disease liver cirrhosis associates Gene ASAH1. Disease liver cirrhosis associates Gene GBA1. Disease liver cirrhosis associates Gene TXNDC15. Disease liver cirrhosis associates Gene DYNC2I1. Disease liver cirrhosis associates Gene STX1A. Gene MIR513A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene IL21R. Disease liver cirrhosis associates Gene PNPLA3. Variant rs28929474 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HDAC9. Disease liver cirrhosis associates Gene CC2D2A. Disease liver cirrhosis associates Gene ABHD5. Disease liver cirrhosis associates Gene TYMP. Disease liver cirrhosis associates Gene SMAD4. Variant rs78069066 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene YARS1. Disease liver cirrhosis associates Gene PHKA2. Gene MIR571 associates Disease liver cirrhosis. Disease head and neck cancer associates Gene COL4A6. Disease head and neck cancer associates Gene CTNNB1. Disease head and neck cancer associates Gene COL4A5. Disease head and neck cancer associates Gene COL14A1. Disease head and neck cancer associates Gene HLA-DQB1. Disease head and neck cancer associates Gene ADH1B. Disease head and neck cancer associates Gene DLEC1. Disease head and neck cancer associates Gene STAT1. Gene ACAA1 marker Disease head and neck cancer. Disease head and neck cancer associates Gene PIK3CA. Variant rs146795390 associates Disease head and neck cancer. Disease head and neck cancer associates Gene TP53. Variant rs1057519830 associates Disease head and neck cancer. Disease head and neck cancer associates Gene APC. Disease head and neck cancer associates Gene DCC. Disease head and neck cancer associates Gene TGFBR2. Gene ALDH3A1 expressedin Disease head and neck cancer. Variant rs121913344 associates Disease head and neck cancer. Disease head and neck cancer associates Gene CTHRC1. Variant rs1453414 associates Disease head and neck cancer. Disease head and neck cancer associates Gene FH. Gene SLC39A2 expressedin Disease head and neck cancer. Gene COL7A1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene CDKN2A. Disease head and neck cancer associates Gene ASCC1. Gene ALDOC marker Disease head and neck cancer. Gene CACNA1S expressedin Disease head and neck cancer. Gene ALOX12B expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene FOXE1. Disease head and neck cancer associates Gene NOTCH1. Gene SLC44A4 marker Disease head and neck cancer. Variant rs2641256 associates Disease head and neck cancer. Disease head and neck cancer associates Gene MYH11. Gene ATP13A5 expressedin Disease head and neck cancer. Variant rs121913231 associates Disease head and neck cancer. Gene SLC25A10 marker Disease head and neck cancer. Variant rs2761591 associates Disease head and neck cancer. Variant rs762384959 associates Disease head and neck cancer. Gene COL7A1 marker Disease head and neck cancer. Gene SLC39A1 marker Disease head and neck cancer. Gene MIR101-1 associates Disease head and neck cancer. Gene SLC6A15 expressedin Disease head and neck cancer. Gene CDH26 expressedin Disease head and neck cancer. Gene ALDH3A1 marker Disease head and neck cancer. Gene ACAP1 marker Disease head and neck cancer. Gene SLC26A9 marker Disease head and neck cancer. Disease head and neck cancer associates Gene HRAS. Variant rs3828805 associates Disease head and neck cancer. Gene CACNG1 expressedin Disease head and neck cancer. Gene COL17A1 expressedin Disease head and neck cancer. Gene SLC10A6 expressedin Disease head and neck cancer. Gene MIR133A1 associates Disease head and neck cancer. Gene CRCT1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHC. Variant rs79767424 associates Disease head and neck cancer. Gene SLC18B1 marker Disease head and neck cancer. Variant rs854936 associates Disease head and neck cancer. Gene ATP13A4 marker Disease head and neck cancer. Disease head and neck cancer associates Gene PDE11A. Gene MIR101-2 associates Disease head and neck cancer. Gene MIR1271 associates Disease head and neck cancer. Disease head and neck cancer associates Gene SDHA. Variant rs104886003 associates Disease head and neck cancer. Gene SLC15A4 marker Disease head and neck cancer. Gene CCNA1 expressedin Disease head and neck cancer. Variant rs1229984 associates Disease head and neck cancer. Disease head and neck cancer associates Gene PTEN. Gene MIR302C associates Disease head and neck cancer. Gene KRT13 expressedin Disease head and neck cancer. Gene MIR133A2 associates Disease head and neck cancer. Gene PPP1R27 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHB. Variant rs77543610 associates Disease head and neck cancer. Gene MIR125B1 associates Disease head and neck cancer. Gene MIR27B associates Disease head and neck cancer. \\nQuestion: Out of the given list, which Gene is associated with liver cirrhosis and head and neck cancer. Given list is: CACNA2D1, HLA-DQA1, ADGRV1, YLPM1, STN1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989710.2781105}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f9fae14e737c07a4b2b07639585f1ed/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f9fae14e737c07a4b2b07639585f1ed/output.pkl Binary files differnew file mode 100644 index 0000000..af2b42a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/9f9fae14e737c07a4b2b07639585f1ed/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a05bcc82b065abf4cdf5176e98bc8e58/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a05bcc82b065abf4cdf5176e98bc8e58/metadata.json new file mode 100644 index 0000000..f3061a5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a05bcc82b065abf4cdf5176e98bc8e58/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5561902523040771, "input_args": {"instruction": "'Context: Variant rs4619206 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Variant rs116551911 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Gene MIR616 associates Disease lung carcinoma. Variant rs577626090 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Gene MIR122 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs13191445 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Gene MIR570 associates Disease lung carcinoma. Variant rs13217620 associates Disease lung carcinoma. Gene MIR106B associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs11639372 associates Disease lung carcinoma. Variant rs12543486 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs577372072 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Variant rs139244745 associates Disease lung carcinoma. Disease lung carcinoma associates Gene SLC17A4. Variant rs11878604 associates Disease lung carcinoma. Variant rs34244947 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs397507466 associates Disease lung carcinoma. Disease lung carcinoma associates Gene IRF4. Variant rs397516895 associates Disease lung carcinoma. Variant rs121913351 associates Disease lung carcinoma. Variant rs138488080 associates Disease lung carcinoma. Variant rs36600 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Variant rs4488809 associates Disease lung carcinoma. Variant rs13212562 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs41266839 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs80264589 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene CCNO. Disease interstitial lung disease associates Gene TERT. Variant rs2736100 associates Disease interstitial lung disease. Variant rs116483731 associates Disease interstitial lung disease. Variant rs116906005 associates Disease interstitial lung disease. Variant rs12702634 associates Disease interstitial lung disease. Variant rs6631122 associates Disease interstitial lung disease. Variant rs2076295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene CCR6. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TP53. Variant rs2034650 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CCDC65. Disease interstitial lung disease associates Gene KIAA0319L. Variant rs12610495 associates Disease interstitial lung disease. Variant rs6886640 associates Disease interstitial lung disease. Variant rs4727443 associates Disease interstitial lung disease. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene SLC26A9. Variant rs912535 associates Disease interstitial lung disease. Variant rs2609255 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene LRRC56. Disease interstitial lung disease associates Gene NKX2-1. Variant rs6477542 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene COL3A1. Variant rs11191865 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CCDC40. Disease interstitial lung disease associates Gene NHLRC2. Disease interstitial lung disease associates Gene SLC6A14. Disease interstitial lung disease associates Gene CLCA4. Disease interstitial lung disease associates Gene CSF2RB. Variant rs2957316 associates Disease interstitial lung disease. Variant rs1981997 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CTC1. Variant rs1278769 associates Disease interstitial lung disease. Variant rs6793295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TGFB1. Disease interstitial lung disease associates Gene RASGRP1. Disease interstitial lung disease associates Gene CCDC103. Disease interstitial lung disease associates Gene LRRC34. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene NEK10. Disease interstitial lung disease associates Gene SCARB2. Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene CFTR. Disease interstitial lung disease associates Gene IL2RB. Disease interstitial lung disease associates Gene CSF2RA. Disease interstitial lung disease associates Gene FAM13A. Gene MIR125B2 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene TINF2. Disease interstitial lung disease associates Gene HFE. Disease interstitial lung disease associates Gene CASP10. Gene MIR200C associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DCTN4. Disease interstitial lung disease associates Gene NPC2. Variant rs73199442 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA1. Disease interstitial lung disease associates Gene DKC1. Disease interstitial lung disease associates Gene IL2RA. Disease interstitial lung disease associates Gene IL1RN. Disease interstitial lung disease associates Gene RTEL1. Disease interstitial lung disease associates Gene SLC34A2. Disease interstitial lung disease associates Gene IRF5. Disease interstitial lung disease associates Gene DNAI1. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and interstitial lung disease. Given list is: ATXN2, TERT, FAM227B, ALDH1A2, KALRN'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048759.1658487}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a05bcc82b065abf4cdf5176e98bc8e58/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a05bcc82b065abf4cdf5176e98bc8e58/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a05bcc82b065abf4cdf5176e98bc8e58/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0954a7aa480464bd7a8a11eab9e0adc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0954a7aa480464bd7a8a11eab9e0adc/metadata.json new file mode 100644 index 0000000..2fbe140 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0954a7aa480464bd7a8a11eab9e0adc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7018833160400391, "input_args": {"instruction": "'Context: Gene MIR3909 associates Disease rheumatic heart disease. Variant rs10794501 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR1299 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Gene MIR205 associates Disease rheumatic heart disease. Disease ontology identifier of rheumatic heart disease is DOID:0050827. Disease rheumatic heart disease resembles Disease pharyngitis. Disease oral cavity cancer associates Gene HLA-DQB1. Variant rs928674 associates Disease oral cavity cancer. Variant rs121909224 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Variant rs8181047 associates Disease oral cavity cancer. Variant rs1229984 associates Disease oral cavity cancer. Variant rs121913277 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. \\nQuestion: Out of the given list, which Gene is associated with rheumatic heart disease and oral cavity cancer. Given list is: HLA-DQB1, IL23R, TM6SF2, BTC, SYT14'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047876.4137464}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0954a7aa480464bd7a8a11eab9e0adc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0954a7aa480464bd7a8a11eab9e0adc/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0954a7aa480464bd7a8a11eab9e0adc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0f6d1c0d8cecd3275033d80dab665ea/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0f6d1c0d8cecd3275033d80dab665ea/metadata.json new file mode 100644 index 0000000..b5e94dc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0f6d1c0d8cecd3275033d80dab665ea/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5683472156524658, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Takayasu's arteritis and psoriatic arthritis. Given list is: RELN, HLA-B, HLA-B, SNTB1, SCN1A\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989762.2018454}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0f6d1c0d8cecd3275033d80dab665ea/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0f6d1c0d8cecd3275033d80dab665ea/output.pkl Binary files differnew file mode 100644 index 0000000..dc713c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a0f6d1c0d8cecd3275033d80dab665ea/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a11b2fb28c2252aa82119e618eae43ae/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a11b2fb28c2252aa82119e618eae43ae/metadata.json new file mode 100644 index 0000000..008f3a0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a11b2fb28c2252aa82119e618eae43ae/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6287069320678711, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriatic arthritis and herpes zoster. Given list is: NANOS1, TLR1, NTM, HLA-B, SCN1A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048749.5853198}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a11b2fb28c2252aa82119e618eae43ae/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a11b2fb28c2252aa82119e618eae43ae/output.pkl Binary files differnew file mode 100644 index 0000000..c66eb38 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a11b2fb28c2252aa82119e618eae43ae/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a16b21fb8d163f9e4c71320d547c7b8c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a16b21fb8d163f9e4c71320d547c7b8c/metadata.json new file mode 100644 index 0000000..4d8581a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a16b21fb8d163f9e4c71320d547c7b8c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4293668270111084, "input_args": {"instruction": "'Context: Disease mature B-cell neoplasm associates Gene LPP.. Variant rs12195582 associates Disease mature B-cell neoplasm. Variant rs4938573 associates Disease mature B-cell neoplasm. Variant rs2647012 associates Disease mature B-cell neoplasm. Variant rs61835088 associates Disease cocaine dependence.. Variant rs2629540 associates Disease cocaine dependence. Variant rs2825295 associates Disease cocaine dependence. Disease cocaine dependence associates Gene FAM53B. Disease cocaine dependence associates Gene FAM78B. Compound (1S,2S,6R,14R,15S,16R)-5-(cyclopropylmethyl)-16-[(2S)-2-hydroxy-3,3-dimethylbutan-2-yl]-15-methoxy-13-oxa-5-azahexacyclo[13.2.2.12,8.01,6.02,14.012,20]icosa-8(20),9,11-trien-11-ol treats Disease cocaine dependence. Disease ontology identifier of cocaine dependence is DOID:9975. Disease cocaine dependence isa Disease drug dependence. Disease cocaine dependence presents Symptom Memory Disorders. Disease cocaine dependence localizes Anatomy brain. Disease cocaine dependence presents Symptom Language Development Disorders. Disease drug psychosis resembles Disease cocaine dependence. Disease cocaine dependence presents Symptom Dyskinesia, Drug-Induced. Disease cocaine dependence presents Symptom Hallucinations. \\nQuestion: Out of the given list, which Gene is associated with mature B-cell neoplasm and cocaine dependence. Given list is: TLR1, SLC14A2, SCN1A, IL12RB2, PLG'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989593.952459}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a16b21fb8d163f9e4c71320d547c7b8c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a16b21fb8d163f9e4c71320d547c7b8c/output.pkl Binary files differnew file mode 100644 index 0000000..939fff2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a16b21fb8d163f9e4c71320d547c7b8c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1af3a8e14466a954524065fbebf448d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1af3a8e14466a954524065fbebf448d/metadata.json new file mode 100644 index 0000000..9a788c3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1af3a8e14466a954524065fbebf448d/metadata.json @@ -0,0 +1 @@ +{"duration": 2.396726369857788, "input_args": {"instruction": "'Context: Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR3909 associates Disease rheumatic heart disease. Variant rs10794501 associates Disease rheumatic heart disease. Gene MIR1299 associates Disease rheumatic heart disease. Gene MIR205 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Gene MIR1183 associates Disease rheumatic heart disease. Disease rheumatic heart disease resembles Disease Wolff-Parkinson-White syndrome. Disease ontology identifier of rheumatic heart disease is DOID:0050827. Variant rs9273542 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene CFAP418. Variant rs4642516 associates Disease nephrotic syndrome. Variant rs369558225 associates Disease nephrotic syndrome. Variant rs570583897 associates Disease nephrotic syndrome. Variant rs4979462 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TNFSF15. Disease nephrotic syndrome associates Gene TTC8. Disease nephrotic syndrome associates Gene HLA-DQB1. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs1569495819 associates Disease nephrotic syndrome. Variant rs2079386835 associates Disease nephrotic syndrome. Variant rs374099285 associates Disease nephrotic syndrome. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs886058679 associates Disease nephrotic syndrome. Variant rs386833920 associates Disease nephrotic syndrome. Variant rs1601356283 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IL2RG. Variant rs1223251037 associates Disease nephrotic syndrome. Variant rs9269202 associates Disease nephrotic syndrome. Variant rs886058682 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PTPRO. Variant rs529211517 associates Disease nephrotic syndrome. Variant rs2045467851 associates Disease nephrotic syndrome. Variant rs369363545 associates Disease nephrotic syndrome. Variant rs886058680 associates Disease nephrotic syndrome. Variant rs974891221 associates Disease nephrotic syndrome. Variant rs886058681 associates Disease nephrotic syndrome. Variant rs886047492 associates Disease nephrotic syndrome. Variant rs554480714 associates Disease nephrotic syndrome. Variant rs371914169 associates Disease nephrotic syndrome. Variant rs2045394381 associates Disease nephrotic syndrome. Variant rs386833947 associates Disease nephrotic syndrome. Variant rs386833909 associates Disease nephrotic syndrome. Variant rs1800492946 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Variant rs121918232 associates Disease nephrotic syndrome. Variant rs386833911 associates Disease nephrotic syndrome. Variant rs386833892 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene STAT4. Variant rs959473971 associates Disease nephrotic syndrome. Variant rs386833895 associates Disease nephrotic syndrome. Variant rs370860586 associates Disease nephrotic syndrome. Variant rs145623004 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SAA1. Variant rs386833863 associates Disease nephrotic syndrome. Variant rs2016645859 associates Disease nephrotic syndrome. Variant rs2858317 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Variant rs386833935 associates Disease nephrotic syndrome. Variant rs1191455921 associates Disease nephrotic syndrome. Variant rs573527081 associates Disease nephrotic syndrome. Variant rs530318579 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Variant rs1054215531 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TBX18. Disease nephrotic syndrome associates Gene RAG2. Variant rs386833882 associates Disease nephrotic syndrome. Variant rs28366266 associates Disease nephrotic syndrome. Variant rs1555331969 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Variant rs386833880 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Variant rs376983109 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Variant rs114203578 associates Disease nephrotic syndrome. Variant rs199506378 associates Disease nephrotic syndrome. Variant rs1412135409 associates Disease nephrotic syndrome. Variant rs1480919035 associates Disease nephrotic syndrome. Variant rs769259446 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene RAG1. Variant rs138656762 associates Disease nephrotic syndrome. Variant rs534522842 associates Disease nephrotic syndrome. Variant rs2637678 associates Disease nephrotic syndrome. Variant rs149560153 associates Disease nephrotic syndrome. \\nQuestion: Out of the given list, which Gene is associated with rheumatic heart disease and nephrotic syndrome. Given list is: CACNA1D, TFAP2B, STAT4, HLA-DQB1, PTK2B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047881.173908}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1af3a8e14466a954524065fbebf448d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1af3a8e14466a954524065fbebf448d/output.pkl Binary files differnew file mode 100644 index 0000000..296a2b5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1af3a8e14466a954524065fbebf448d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1f51b33059c5b3a6f5fe89765cb3131/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1f51b33059c5b3a6f5fe89765cb3131/metadata.json new file mode 100644 index 0000000..d3e29ba --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1f51b33059c5b3a6f5fe89765cb3131/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4006354808807373, "input_args": {"instruction": "'Context: Variant rs535965616 associates Disease breast carcinoma. Variant rs587776650 associates Disease breast carcinoma. Variant rs17350191 associates Disease breast carcinoma. Variant rs4951011 associates Disease breast carcinoma. Variant rs587782011 associates Disease breast carcinoma. Variant rs5995881 associates Disease breast carcinoma. Variant rs587782849 associates Disease breast carcinoma. Variant rs4971059 associates Disease breast carcinoma. Variant rs11652463 associates Disease breast carcinoma. Variant rs145928162 associates Disease breast carcinoma. Variant rs555607708 associates Disease breast carcinoma. Variant rs62485509 associates Disease breast carcinoma. Variant rs1555461727 associates Disease breast carcinoma. Variant rs4149909 associates Disease breast carcinoma. Variant rs55821517 associates Disease breast carcinoma. Variant rs569369507 associates Disease breast carcinoma. Variant rs11693806 associates Disease breast carcinoma. Variant rs587782652 associates Disease breast carcinoma. Variant rs146817970 associates Disease breast carcinoma. Variant rs12655019 associates Disease breast carcinoma. Variant rs4849887 associates Disease breast carcinoma. Variant rs55811218 associates Disease breast carcinoma. Variant rs4980386 associates Disease breast carcinoma. Variant rs4848599 associates Disease breast carcinoma. Variant rs587783057 associates Disease breast carcinoma. Variant rs59867004 associates Disease breast carcinoma. Variant rs12458099 associates Disease breast carcinoma. Variant chr5:58365353 associates Disease breast carcinoma. Variant rs886040319 associates Disease breast carcinoma. Variant chr1:149025528 associates Disease breast carcinoma. Variant rs61754966 associates Disease breast carcinoma. Variant rs11552449 associates Disease breast carcinoma. Variant rs58058861 associates Disease breast carcinoma. Variant rs61929345 associates Disease breast carcinoma. Variant rs4973768 associates Disease breast carcinoma. Variant rs11852999 associates Disease breast carcinoma. Variant rs9257809 associates Disease breast carcinoma. Variant rs878853813 associates Disease breast carcinoma. Variant rs587779834 associates Disease breast carcinoma. Variant rs4821942 associates Disease breast carcinoma. Variant rs150460514 associates Disease breast carcinoma. Variant rs587778541 associates Disease breast carcinoma. Variant rs886040950 associates Disease breast carcinoma. Variant rs60778117 associates Disease breast carcinoma. Variant rs587781633 associates Disease breast carcinoma. Variant rs13281615 associates Disease breast carcinoma. Variant rs62331150 associates Disease breast carcinoma. Variant rs377595512 associates Disease breast carcinoma. Variant rs11462858 associates Disease breast carcinoma. Variant chr12:115835798 associates Disease breast carcinoma. Variant rs139770721 associates Disease breast carcinoma. Variant rs2253762 associates Disease breast carcinoma. Variant rs35951924 associates Disease breast carcinoma. Variant rs1057518875 associates Disease breast carcinoma. Variant rs11680449 associates Disease breast carcinoma. Variant rs368466538 associates Disease breast carcinoma. Variant rs66823261 associates Disease breast carcinoma. Variant rs587781506 associates Disease breast carcinoma. Variant rs61865900 associates Disease breast carcinoma. Variant rs8176636 associates Disease breast carcinoma. Variant rs4286946 associates Disease breast carcinoma. Variant rs6752414 associates Disease breast carcinoma. Variant rs58742730 associates Disease breast carcinoma. Variant chr17:44759766 associates Disease breast carcinoma. Variant rs142427110 associates Disease breast carcinoma. Variant rs111730030 associates Disease breast carcinoma. Variant rs12250948 associates Disease breast carcinoma. Variant rs142890050 associates Disease breast carcinoma. Variant rs41293465 associates Disease breast carcinoma. Variant chr17:44184819 associates Disease breast carcinoma. Variant rs141930488 associates Disease breast carcinoma. Variant rs59885616 associates Disease breast carcinoma. Variant rs377153250 associates Disease breast carcinoma. Variant chr12:28452497 associates Disease breast carcinoma. Variant rs11684853 associates Disease breast carcinoma. Variant rs9397437 associates Disease male breast cancer. Variant rs3803662 associates Disease male breast cancer. Variant rs1314913 associates Disease male breast cancer.. Variant rs554219 associates Disease male breast cancer. Variant rs3757322 associates Disease male breast cancer. Variant rs9383938 associates Disease male breast cancer. Variant rs78540526 associates Disease male breast cancer. Disease male breast cancer associates Gene CCDC170. Disease male breast cancer associates Gene ESR1. Disease male breast cancer associates Gene RAD51B. Disease ontology identifier of male breast cancer is DOID:1614. Disease male breast cancer resembles Disease breast ductal carcinoma. Disease male breast cancer resembles Disease invasive lobular carcinoma. \\nQuestion: Out of the given list, which Variant is associated with breast carcinoma and male breast cancer. Given list is: rs11651755, rs9271588, rs2472493, rs3803662, rs4459895'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050455.6319761}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1f51b33059c5b3a6f5fe89765cb3131/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1f51b33059c5b3a6f5fe89765cb3131/output.pkl Binary files differnew file mode 100644 index 0000000..1c1b8ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a1f51b33059c5b3a6f5fe89765cb3131/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2683fe48d64663448e065a76f70a609/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2683fe48d64663448e065a76f70a609/metadata.json new file mode 100644 index 0000000..ff696ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2683fe48d64663448e065a76f70a609/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5404534339904785, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs950881 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene TNFSF4. Disease allergic rhinitis associates Gene FOSL2. Variant rs7953139 associates Disease allergic rhinitis. Variant rs3128967 associates Disease allergic rhinitis. Variant rs144829310 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DMB. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IRF1. Variant rs5743618 associates Disease allergic rhinitis. Variant rs3793079 associates Disease allergic rhinitis. Variant chr6:32631116 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Variant rs9273373 associates Disease allergic rhinitis. Variant rs1438673 associates Disease allergic rhinitis.. Variant rs9442514 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs5743604 associates Disease allergic rhinitis. Variant rs7749543 associates Disease allergic rhinitis. Variant rs61977073 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1RL1. Variant rs2961920 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Variant rs148505069 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1B. Variant rs45613035 associates Disease allergic rhinitis. Variant rs9297768 associates Disease allergic rhinitis. Variant rs17133587 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HSPE1-MOB4. Variant rs11644510 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF11A. Disease allergic rhinitis associates Gene IL7R. Variant rs9775039 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Variant rs981625 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Variant rs34004019 associates Disease allergic rhinitis. Variant rs9272545 associates Disease allergic rhinitis. Variant rs707954 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene COL15A1. Variant rs61839660 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Variant rs1689510 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Variant rs1837253 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL2RA. Variant rs1950897 associates Disease allergic rhinitis. Variant rs9648346 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC15A2. Variant rs4771332 associates Disease allergic rhinitis. Variant rs4939490 associates Disease allergic rhinitis. Variant rs9494883 associates Disease allergic rhinitis. Variant rs3116590 associates Disease allergic rhinitis. Variant rs13395467 associates Disease allergic rhinitis. Variant rs34463936 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL13. Variant rs1444789 associates Disease allergic rhinitis. Variant rs4739736 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD50. Disease allergic rhinitis associates Gene CSF2RB. Variant rs962993 associates Disease allergic rhinitis. Variant rs35350651 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs7725052 associates Disease allergic rhinitis. Variant rs9271701 associates Disease allergic rhinitis. Variant rs479844 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene PHF19. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Variant rs537841689 associates Disease herpes zoster.. Variant rs541558502 associates Disease herpes zoster. Variant rs142765674 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Variant rs117171752 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Variant rs147482218 associates Disease herpes zoster. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene POLR3A. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene LRRC32. Disease herpes zoster associates Gene STAT1. Variant rs75640364 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT3. Variant rs765885335 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease herpes zoster presents Symptom Hyperesthesia. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster presents Symptom Earache. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster presents Symptom Facial Pain. Disease herpes zoster presents Symptom Hypesthesia. Disease herpes zoster presents Symptom Neuralgia. Compound Capsaicin treats Disease herpes zoster. Disease herpes zoster presents Symptom Toothache. Compound Tacrolimus contraindicates Disease herpes zoster. Disease herpes zoster presents Symptom Paresis. Disease herpes zoster presents Symptom Neuralgia, Postherpetic. Disease herpes zoster localizes Anatomy skin of body. Disease trigeminal neuralgia resembles Disease herpes zoster. Disease facial dermatosis resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy temporal artery. Compound Mycophenolic acid contraindicates Disease herpes zoster. Disease herpes zoster localizes Anatomy facial nerve. Compound RECOMBINANT VARICELLA ZOSTER VIRUS (VZV) GLYCOPROTEIN E treats Disease herpes zoster. Disease herpes zoster localizes Anatomy central nervous system. Disease facial nerve disease resembles Disease herpes zoster. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and herpes zoster. Given list is: CHST11, HLA-B, HLA-DQB1, RELN, TP53'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048713.2511358}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2683fe48d64663448e065a76f70a609/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2683fe48d64663448e065a76f70a609/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2683fe48d64663448e065a76f70a609/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2b246dc5decc027d2daae77955ee2fe/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2b246dc5decc027d2daae77955ee2fe/metadata.json new file mode 100644 index 0000000..917fda0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2b246dc5decc027d2daae77955ee2fe/metadata.json @@ -0,0 +1 @@ +{"duration": 0.3755640983581543, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with focal epilepsy and epilepsy. Given list is: SCN1A, ABCG2, DTNB, LRMDA, CPS1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988486.5413852}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2b246dc5decc027d2daae77955ee2fe/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2b246dc5decc027d2daae77955ee2fe/output.pkl Binary files differnew file mode 100644 index 0000000..5fc5654 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2b246dc5decc027d2daae77955ee2fe/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2fc1ab98a498567d5bcdb580ed6f41d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2fc1ab98a498567d5bcdb580ed6f41d/metadata.json new file mode 100644 index 0000000..7df10d4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2fc1ab98a498567d5bcdb580ed6f41d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5533998012542725, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with collagenous colitis and membranous glomerulonephritis. Given list is: PHACTR1, CASZ1, PNPLA3, HLA-DQA1, ATP2B1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047724.168744}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2fc1ab98a498567d5bcdb580ed6f41d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2fc1ab98a498567d5bcdb580ed6f41d/output.pkl Binary files differnew file mode 100644 index 0000000..dac58ba --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a2fc1ab98a498567d5bcdb580ed6f41d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a39a39d134b91ff66bd2de04c22f3755/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a39a39d134b91ff66bd2de04c22f3755/metadata.json new file mode 100644 index 0000000..0dd6c18 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a39a39d134b91ff66bd2de04c22f3755/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5597217082977295, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oropharynx cancer and nephrotic syndrome. Given list is: FER, HLA-DQB1, FTO, SLC2A9, RAD51B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990068.0667377}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a39a39d134b91ff66bd2de04c22f3755/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a39a39d134b91ff66bd2de04c22f3755/output.pkl Binary files differnew file mode 100644 index 0000000..532361b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a39a39d134b91ff66bd2de04c22f3755/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a4dd89c586c50ba237afefb22ec0a16c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a4dd89c586c50ba237afefb22ec0a16c/metadata.json new file mode 100644 index 0000000..31949c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a4dd89c586c50ba237afefb22ec0a16c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9778351783752441, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with primary angle-closure glaucoma and periodontitis. Given list is: EPDR1, ADH1B, USHBP1, POU5F1B, SHTN1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989653.2527022}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a4dd89c586c50ba237afefb22ec0a16c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a4dd89c586c50ba237afefb22ec0a16c/output.pkl Binary files differnew file mode 100644 index 0000000..5e9600b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a4dd89c586c50ba237afefb22ec0a16c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a5dc0355fc5ea7cd64c212d35eb7bf96/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a5dc0355fc5ea7cd64c212d35eb7bf96/metadata.json new file mode 100644 index 0000000..111841c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a5dc0355fc5ea7cd64c212d35eb7bf96/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6840958595275879, "input_args": {"instruction": "'Context: Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Skin Manifestations. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma localizes Anatomy skin of body. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Disease psoriasis associates Gene HLA-B. Disease psoriasis associates Gene DNAJB4. Variant rs3094205 x rs12191877 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Disease psoriasis associates Gene MFSD4B. Variant rs13203895 x rs4349859 associates Disease psoriasis. Disease psoriasis associates Gene ELMO1. Disease psoriasis associates Gene ERAP1. Disease psoriasis associates Gene BCL11B. Gene MIR19B1 associates Disease psoriasis. Variant rs3094205 x rs1265078 associates Disease psoriasis. Variant rs1960278 x rs4947314 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DRB1. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs9366778 x rs4959062 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs3130517 x rs12191877 associates Disease psoriasis. Variant rs6929464 x rs1639110 associates Disease psoriasis. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant chr1: 152591953 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs3130573 x rs12191877 associates Disease psoriasis. Variant rs2517985 x rs13194571 associates Disease psoriasis. Variant chr19: 10886206 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DQB1. Variant rs1639110 x rs4358666 associates Disease psoriasis. Disease psoriasis associates Gene ERAP2. Variant rs3130982 x rs9366778 associates Disease psoriasis. Variant chr10: 81043743 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant chr9: 110792282 associates Disease psoriasis. Variant rs2844624 x rs2523619 associates Disease psoriasis. Variant chr11: 128391937 associates Disease psoriasis. Variant chr13: 45321731 associates Disease psoriasis. Variant chr1: 8286009 associates Disease psoriasis. Variant rs3131788 x rs2524096 associates Disease psoriasis. Variant rs1639110 x rs45533135 associates Disease psoriasis. Variant rs1265079 x rs4358666 associates Disease psoriasis. Variant chr17: 78175483 associates Disease psoriasis. Variant rs3094222 x rs2524096 associates Disease psoriasis. Variant chr10: 75601596 associates Disease psoriasis. Variant rs4358666 x rs6916062 associates Disease psoriasis. Variant chr12: 56741228 associates Disease psoriasis. Variant rs13191519 x rs4418214 associates Disease psoriasis. Variant rs6931633 x rs2853935 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis. Variant rs2517985 x rs4358666 associates Disease psoriasis. Variant chr6: 577820 associates Disease psoriasis. Variant chr5: 96118852 associates Disease psoriasis. Variant rs2853950 x rs3130573 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant chr18: 51816394 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant rs1639110 x rs17206680 associates Disease psoriasis. Variant rs6931633 x rs28575156 associates Disease psoriasis. Variant rs3130467 x rs12191877 associates Disease psoriasis. Variant rs59827721 associates Disease psoriasis. Variant chr7: 37385365 associates Disease psoriasis. Gene MIR423 associates Disease psoriasis. Variant chr3: 16996623 associates Disease psoriasis. Variant rs12527188 x rs2853961 associates Disease psoriasis. Disease psoriasis associates Gene PIK3CD. Variant rs7750641 x rs2524096 associates Disease psoriasis. Variant rs2894176 x rs12191877 associates Disease psoriasis. Variant rs2524096 x rs28575156 associates Disease psoriasis. Variant rs4248149 x rs9380237 associates Disease psoriasis. Variant rs13191519 x rs45533135 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant rs2853952 x rs45533135 associates Disease psoriasis. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and psoriasis. Given list is: ERAP1, CLPTM1L, ADGRG6, HLA-B, MST1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048299.7138467}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a5dc0355fc5ea7cd64c212d35eb7bf96/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a5dc0355fc5ea7cd64c212d35eb7bf96/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a5dc0355fc5ea7cd64c212d35eb7bf96/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a610da509a46746899b96525538630fa/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a610da509a46746899b96525538630fa/metadata.json new file mode 100644 index 0000000..d11919c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a610da509a46746899b96525538630fa/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8376357555389404, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and triple-receptor negative breast cancer. Given list is: ABO, SCN1A, TERT, TGM2, COL22A1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047829.4571168}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a610da509a46746899b96525538630fa/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a610da509a46746899b96525538630fa/output.pkl Binary files differnew file mode 100644 index 0000000..cb96437 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a610da509a46746899b96525538630fa/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a65c332da07fc0fdaa155dab714ca004/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a65c332da07fc0fdaa155dab714ca004/metadata.json new file mode 100644 index 0000000..66144b9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a65c332da07fc0fdaa155dab714ca004/metadata.json @@ -0,0 +1 @@ +{"duration": 0.3873007297515869, "input_args": {"instruction": "'Context: Disease oral cavity cancer associates Gene HLA-DQB1. Variant rs121909224 associates Disease oral cavity cancer. Variant rs121913281 associates Disease oral cavity cancer. Variant rs928674 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. Variant rs121913277 associates Disease oral cavity cancer. Variant rs8181047 associates Disease oral cavity cancer. Disease oral cavity cancer associates Gene GPN1.. Gene MIR3909 associates Disease rheumatic heart disease. Gene MIR1299 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Variant rs10794501 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Gene MIR205 associates Disease rheumatic heart disease. Variant rs4494157 associates Disease rheumatic heart disease.. Disease rheumatic heart disease resembles Disease pharyngitis. Disease ontology identifier of rheumatic heart disease is DOID:0050827. \\nQuestion: Out of the given list, which Gene is associated with oral cavity cancer and rheumatic heart disease. Given list is: HLA-DQB1, HBB, TNNT2, ITPA, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989768.2153168}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a65c332da07fc0fdaa155dab714ca004/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a65c332da07fc0fdaa155dab714ca004/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a65c332da07fc0fdaa155dab714ca004/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a67b8c44dcbe8a15f48b6f7ce6d99b77/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a67b8c44dcbe8a15f48b6f7ce6d99b77/metadata.json new file mode 100644 index 0000000..22d4ba5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a67b8c44dcbe8a15f48b6f7ce6d99b77/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5499823093414307, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with pancreatic carcinoma and oral cavity cancer. Given list is: GCKR, CLPTM1L, CHST11, CRTC1, COL22A1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048135.0624197}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a67b8c44dcbe8a15f48b6f7ce6d99b77/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a67b8c44dcbe8a15f48b6f7ce6d99b77/output.pkl Binary files differnew file mode 100644 index 0000000..cc25f70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a67b8c44dcbe8a15f48b6f7ce6d99b77/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6befe96f78539d43babcdd71cf0ec34/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6befe96f78539d43babcdd71cf0ec34/metadata.json new file mode 100644 index 0000000..29dbcb6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6befe96f78539d43babcdd71cf0ec34/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6523308753967285, "input_args": {"instruction": "'Context: Disease dermatomyositis associates Gene HLA-DPB1. Disease dermatomyositis associates Gene HLA-DPA1. Variant HLA_DPB1*17 associates Disease dermatomyositis. Disease childhood type dermatomyositis isa Disease dermatomyositis. Variant rs7750458 associates Disease dermatomyositis. Disease dermatomyositis resembles Disease childhood type dermatomyositis. Gene MIR205 associates Disease dermatomyositis. Gene MIR146A associates Disease dermatomyositis. Gene MIR206 associates Disease dermatomyositis. Disease ontology identifier of dermatomyositis is DOID:10223. Disease dermatomyositis resembles Disease connective tissue disease.. Disease dermatomyositis resembles Disease mixed connective tissue disease. Disease dermatomyositis resembles Disease hand dermatosis. Disease dermatomyositis presents Symptom Skin Manifestations. Disease dermatomyositis resembles Disease myositis. Disease dermatomyositis isa Disease skin disease. Disease dermatomyositis isa Disease myositis. Disease polymyositis resembles Disease dermatomyositis. Disease dermatomyositis presents Symptom Myotonia. Disease dermatomyositis resembles Disease collagen disease. Disease dermatomyositis presents Symptom Muscle Weakness. Variant rs3129843 associates Disease childhood type dermatomyositis.. Disease ontology identifier of childhood type dermatomyositis is DOID:14203. Disease childhood type dermatomyositis associates Gene LY86. Disease childhood type dermatomyositis isa Disease dermatomyositis. Disease childhood type dermatomyositis resembles Disease myositis. Disease childhood type dermatomyositis presents Symptom Skin Manifestations. Disease childhood type dermatomyositis localizes Anatomy skin of body. Disease childhood type dermatomyositis resembles Disease hand dermatosis. Disease childhood type dermatomyositis resembles Disease mixed connective tissue disease. Disease polymyositis resembles Disease childhood type dermatomyositis. Disease childhood type dermatomyositis resembles Disease connective tissue disease. Disease dermatomyositis resembles Disease childhood type dermatomyositis. Disease childhood type dermatomyositis resembles Disease facial dermatosis. Disease childhood type dermatomyositis localizes Anatomy muscle tissue. Disease childhood type dermatomyositis resembles Disease collagen disease. Disease childhood type dermatomyositis presents Symptom Myalgia. Disease childhood type dermatomyositis presents Symptom Muscle Weakness. Disease childhood type dermatomyositis presents Symptom Myotonia. \\nQuestion: Out of the given list, which Gene is associated with dermatomyositis and childhood type dermatomyositis. Given list is: GSDMB, HLA-DQA1, ADH1B, POU5F1B, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048085.3076348}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6befe96f78539d43babcdd71cf0ec34/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6befe96f78539d43babcdd71cf0ec34/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6befe96f78539d43babcdd71cf0ec34/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6dcdc7c619b92e1d2e868a2198719d6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6dcdc7c619b92e1d2e868a2198719d6/metadata.json new file mode 100644 index 0000000..7cd708e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6dcdc7c619b92e1d2e868a2198719d6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.47472596168518066, "input_args": {"instruction": "'Context: Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene ABCA3. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene RTEL1. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene NPRL3. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs79684490 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs112087793 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TOLLIP. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs74614704 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene TP53. Variant rs10771399 associates Disease triple-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and triple-receptor negative breast cancer. Given list is: RELN, TERT, PLA2R1, DNMT3A, ABO'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989532.1869717}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6dcdc7c619b92e1d2e868a2198719d6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6dcdc7c619b92e1d2e868a2198719d6/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6dcdc7c619b92e1d2e868a2198719d6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6eae74ece4f84bec8594f04e407bfeb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6eae74ece4f84bec8594f04e407bfeb/metadata.json new file mode 100644 index 0000000..ed7059a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6eae74ece4f84bec8594f04e407bfeb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6272473335266113, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with wheat allergy and dengue hemorrhagic fever. Given list is: NEURL1, DLEU7, DMRT1, ADGRG6, RBFOX1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047886.4132767}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6eae74ece4f84bec8594f04e407bfeb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6eae74ece4f84bec8594f04e407bfeb/output.pkl Binary files differnew file mode 100644 index 0000000..af745a6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6eae74ece4f84bec8594f04e407bfeb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6fd037088e3e692ff2dc85f01365512/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6fd037088e3e692ff2dc85f01365512/metadata.json new file mode 100644 index 0000000..4623165 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6fd037088e3e692ff2dc85f01365512/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4982414245605469, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with male breast cancer and breast carcinoma. Given list is: rs3803662, rs34574566, rs1278769, rs16948876, rs10488631'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048870.6997128}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6fd037088e3e692ff2dc85f01365512/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6fd037088e3e692ff2dc85f01365512/output.pkl Binary files differnew file mode 100644 index 0000000..7ca0ac8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a6fd037088e3e692ff2dc85f01365512/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a723a2d1a114bf5ed5323a89ddba0aec/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a723a2d1a114bf5ed5323a89ddba0aec/metadata.json new file mode 100644 index 0000000..9f74fe8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a723a2d1a114bf5ed5323a89ddba0aec/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6118443012237549, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with collagenous colitis and cervix carcinoma. Given list is: NEURL1, TERT, HLA-DQA1, TERT, SLC17A4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989942.178091}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a723a2d1a114bf5ed5323a89ddba0aec/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a723a2d1a114bf5ed5323a89ddba0aec/output.pkl Binary files differnew file mode 100644 index 0000000..660c0bb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a723a2d1a114bf5ed5323a89ddba0aec/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a778ecd5a9a3b340670204f655dc285f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a778ecd5a9a3b340670204f655dc285f/metadata.json new file mode 100644 index 0000000..a4cf2b9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a778ecd5a9a3b340670204f655dc285f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.745450496673584, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene HLA-DQB1. Disease allergic rhinitis associates Gene HLA-DQA1. Variant rs5743618 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFSF4. Variant rs11685995 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Disease allergic rhinitis associates Gene TNFRSF11A. Disease allergic rhinitis associates Gene ATXN2. Variant rs34004019 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC27A4. Variant rs59183580 associates Disease allergic rhinitis. Variant rs12509403 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Variant rs4939490 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DMB. Variant rs2961920 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Variant rs1140310 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene LPP. Variant rs62404084 associates Disease allergic rhinitis. Variant rs3793079 associates Disease allergic rhinitis. Variant rs9442514 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Variant rs16858573 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs17513503 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene GLB1. Variant rs3128967 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs950881 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene REL. Disease allergic rhinitis associates Gene FOSL2. Disease allergic rhinitis associates Gene IL2RA. Variant rs35597970 associates Disease allergic rhinitis. Variant rs12952581 associates Disease allergic rhinitis. Variant rs35350651 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD51B. Disease allergic rhinitis associates Gene IL1RL1. Variant rs13277355 associates Disease allergic rhinitis. Variant rs130071 associates Disease allergic rhinitis. Variant rs13395467 associates Disease allergic rhinitis. Variant rs17133587 associates Disease allergic rhinitis. Variant rs6011033 associates Disease allergic rhinitis. Variant rs17454584 associates Disease allergic rhinitis. Variant rs61192126 associates Disease allergic rhinitis. Variant rs138050288 associates Disease allergic rhinitis. Variant rs61839660 associates Disease allergic rhinitis. Variant rs4845604 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Variant rs4381563 associates Disease allergic rhinitis. Variant rs45599938 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ADAD1. Variant rs28407950 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Variant rs13185930 associates Disease allergic rhinitis. Variant rs34210653 associates Disease allergic rhinitis. Variant rs10468514 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ALOX15. Disease allergic rhinitis associates Gene RTF1. Variant rs111371454 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1B. Variant rs4771332 associates Disease allergic rhinitis. Variant rs61977073 associates Disease allergic rhinitis. Variant rs3024971 associates Disease allergic rhinitis. Variant chr6:32631116 associates Disease allergic rhinitis. Variant rs509399 associates Disease allergic rhinitis. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Arthralgia.. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma localizes Anatomy nasal cavity. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and diffuse large B-cell lymphoma. Given list is: HLA-B, CACNA1A, TERT, EPDR1, ATXN2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048715.21565}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a778ecd5a9a3b340670204f655dc285f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a778ecd5a9a3b340670204f655dc285f/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a778ecd5a9a3b340670204f655dc285f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a8ab9e2f28ffe5eda41aa165c48fffd1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a8ab9e2f28ffe5eda41aa165c48fffd1/metadata.json new file mode 100644 index 0000000..1ca62ce --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a8ab9e2f28ffe5eda41aa165c48fffd1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6277339458465576, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with liver cirrhosis and uveal melanoma. Given list is: VAV3, PSCA, CACNA2D1, NTM, SULT1B1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989712.5021656}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a8ab9e2f28ffe5eda41aa165c48fffd1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a8ab9e2f28ffe5eda41aa165c48fffd1/output.pkl Binary files differnew file mode 100644 index 0000000..1ea4076 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/a8ab9e2f28ffe5eda41aa165c48fffd1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aa20de1acf9f3816a2230093337c3ef6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aa20de1acf9f3816a2230093337c3ef6/metadata.json new file mode 100644 index 0000000..cda48f4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aa20de1acf9f3816a2230093337c3ef6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6296169757843018, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ankylosing spondylitis and ulcerative colitis. Given list is: KIT, SAMM50, IL23R, PSCA, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989885.1059282}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aa20de1acf9f3816a2230093337c3ef6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aa20de1acf9f3816a2230093337c3ef6/output.pkl Binary files differnew file mode 100644 index 0000000..5658a57 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aa20de1acf9f3816a2230093337c3ef6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aab3d3bdcac10cefaa5aa85ab1e310b2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aab3d3bdcac10cefaa5aa85ab1e310b2/metadata.json new file mode 100644 index 0000000..badce2a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aab3d3bdcac10cefaa5aa85ab1e310b2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4452509880065918, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and central nervous system cancer. Given list is: FGFR2, TERT, HLA-DQA1, GTF2I, SLC14A2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988546.908388}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aab3d3bdcac10cefaa5aa85ab1e310b2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aab3d3bdcac10cefaa5aa85ab1e310b2/output.pkl Binary files differnew file mode 100644 index 0000000..764e8df --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aab3d3bdcac10cefaa5aa85ab1e310b2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab0acaca072d2a310c72f743b32700b8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab0acaca072d2a310c72f743b32700b8/metadata.json new file mode 100644 index 0000000..1007c12 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab0acaca072d2a310c72f743b32700b8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6791486740112305, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with Kuhnt-Junius degeneration and age related macular degeneration. Given list is: rs219780, rs3197999, rs4072037, rs6691768, rs10490924'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048929.903274}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab0acaca072d2a310c72f743b32700b8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab0acaca072d2a310c72f743b32700b8/output.pkl Binary files differnew file mode 100644 index 0000000..1af1d05 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab0acaca072d2a310c72f743b32700b8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab748e00a827b670d545c31cd8cfd7b2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab748e00a827b670d545c31cd8cfd7b2/metadata.json new file mode 100644 index 0000000..14630a1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab748e00a827b670d545c31cd8cfd7b2/metadata.json @@ -0,0 +1 @@ +{"duration": 11.492117643356323, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with differentiated thyroid gland carcinoma and hypothyroidism. Given list is: ERAP1, HLA-DQA1, VAV3, PINX1, PCDH15'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989879.264335}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab748e00a827b670d545c31cd8cfd7b2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab748e00a827b670d545c31cd8cfd7b2/output.pkl Binary files differnew file mode 100644 index 0000000..d454784 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ab748e00a827b670d545c31cd8cfd7b2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ad83fadf3550941a05f37ed786f258e1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ad83fadf3550941a05f37ed786f258e1/metadata.json new file mode 100644 index 0000000..1c1d171 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ad83fadf3550941a05f37ed786f258e1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6936120986938477, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oral cavity cancer and oropharynx cancer. Given list is: GCKR, HLA-DQB1, CACNA1S, TNFSF15, RAD51B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989764.9321132}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ad83fadf3550941a05f37ed786f258e1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ad83fadf3550941a05f37ed786f258e1/output.pkl Binary files differnew file mode 100644 index 0000000..e4ec852 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ad83fadf3550941a05f37ed786f258e1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/addc9131436947ba4b401f5926ec8ef9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/addc9131436947ba4b401f5926ec8ef9/metadata.json new file mode 100644 index 0000000..961034f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/addc9131436947ba4b401f5926ec8ef9/metadata.json @@ -0,0 +1 @@ +{"duration": 22.06794762611389, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ulcerative colitis and inflammatory bowel disease. Given list is: SAMD9L, IL23R, GATA3, DNMT3A, RAD51B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990123.4693272}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/addc9131436947ba4b401f5926ec8ef9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/addc9131436947ba4b401f5926ec8ef9/output.pkl Binary files differnew file mode 100644 index 0000000..2a79bd2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/addc9131436947ba4b401f5926ec8ef9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae099d2bd8484267d72b25aa21caa1bb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae099d2bd8484267d72b25aa21caa1bb/metadata.json new file mode 100644 index 0000000..aa3f4b1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae099d2bd8484267d72b25aa21caa1bb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6524162292480469, "input_args": {"instruction": "'Context: Disease lung squamous cell carcinoma associates Gene BRCA2. Variant rs1669420011 associates Disease lung squamous cell carcinoma. Variant rs142618987 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene CYP2A6.. Variant rs555765842 associates Disease lung squamous cell carcinoma. Variant rs1794304820 associates Disease lung squamous cell carcinoma. Variant rs578015216 associates Disease lung squamous cell carcinoma. Variant rs2276550 associates Disease lung squamous cell carcinoma. Variant rs148883465 associates Disease lung squamous cell carcinoma. Variant rs1057519884 associates Disease lung squamous cell carcinoma. Variant rs1057520039 associates Disease lung squamous cell carcinoma. Variant rs1057519920 associates Disease lung squamous cell carcinoma. Variant rs1057519932 associates Disease lung squamous cell carcinoma. Variant rs36109883 associates Disease lung squamous cell carcinoma. Variant rs1057519926 associates Disease lung squamous cell carcinoma. Variant rs1057519921 associates Disease lung squamous cell carcinoma. Variant rs1057519925 associates Disease lung squamous cell carcinoma. Variant rs1057519930 associates Disease lung squamous cell carcinoma. Variant rs1668958808 associates Disease lung squamous cell carcinoma. Variant rs1057519923 associates Disease lung squamous cell carcinoma. Variant rs1057519922 associates Disease lung squamous cell carcinoma. Variant rs56404467 associates Disease lung squamous cell carcinoma. Variant rs967461896 associates Disease lung squamous cell carcinoma. Variant rs544282452 associates Disease lung squamous cell carcinoma. Variant rs1057519882 associates Disease lung squamous cell carcinoma. Variant rs1057519931 associates Disease lung squamous cell carcinoma. Variant rs1057519883 associates Disease lung squamous cell carcinoma. Variant rs876658468 associates Disease lung squamous cell carcinoma. Variant rs1057519924 associates Disease lung squamous cell carcinoma. Variant rs3795850 associates Disease lung squamous cell carcinoma. Variant rs1057520003 associates Disease lung squamous cell carcinoma. Variant rs483352697 associates Disease lung squamous cell carcinoma. Variant rs1057519789 associates Disease lung squamous cell carcinoma. Variant rs34966100 associates Disease lung squamous cell carcinoma. Variant rs56132472 associates Disease lung squamous cell carcinoma. Variant rs3117582 associates Disease lung squamous cell carcinoma. Variant rs1057519912 associates Disease lung squamous cell carcinoma. Variant rs1057519895 associates Disease lung squamous cell carcinoma. Variant rs465498 associates Disease lung squamous cell carcinoma. Variant rs1057519992 associates Disease lung squamous cell carcinoma. Variant rs1057520004 associates Disease lung squamous cell carcinoma. Variant rs1057519790 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene CHRNB4. Variant rs147680653 associates Disease lung squamous cell carcinoma. Variant rs116461399 associates Disease lung squamous cell carcinoma. Variant rs1057519975 associates Disease lung squamous cell carcinoma. Variant rs864622237 associates Disease lung squamous cell carcinoma. Variant rs1057519990 associates Disease lung squamous cell carcinoma. Variant rs481519 associates Disease lung squamous cell carcinoma. Variant rs1057519997 associates Disease lung squamous cell carcinoma. Variant rs1057519994 associates Disease lung squamous cell carcinoma. Variant rs1057519928 associates Disease lung squamous cell carcinoma. Variant rs1057519889 associates Disease lung squamous cell carcinoma. Variant rs942158624 associates Disease lung squamous cell carcinoma. Variant rs876660821 associates Disease lung squamous cell carcinoma. Variant rs876659802 associates Disease lung squamous cell carcinoma. Variant rs144594252 associates Disease lung squamous cell carcinoma. Variant rs1057519976 associates Disease lung squamous cell carcinoma. Variant rs56113850 associates Disease lung squamous cell carcinoma. Variant rs866987936 associates Disease lung squamous cell carcinoma. Variant rs116310021 associates Disease lung squamous cell carcinoma. Variant rs34878803 associates Disease lung squamous cell carcinoma. Variant rs1057519980 associates Disease lung squamous cell carcinoma. Variant rs13201294 associates Disease lung squamous cell carcinoma. Variant rs1057520018 associates Disease lung squamous cell carcinoma. Variant rs1951385786 associates Disease lung squamous cell carcinoma. Variant rs149866169 associates Disease lung squamous cell carcinoma. Variant rs1663742530 associates Disease lung squamous cell carcinoma. Variant rs56354945 associates Disease lung squamous cell carcinoma. Variant rs143729297 associates Disease lung squamous cell carcinoma. Variant rs116725014 associates Disease lung squamous cell carcinoma. Variant rs56084662 associates Disease lung squamous cell carcinoma. Variant rs1057519978 associates Disease lung squamous cell carcinoma. Variant rs866775781 associates Disease lung squamous cell carcinoma. Variant rs148861668 associates Disease lung squamous cell carcinoma. Disease squamous cell carcinoma associates Gene DTNBP1. Disease squamous cell carcinoma associates Gene DDB2. Disease squamous cell carcinoma associates Gene BRCA2. Disease squamous cell carcinoma associates Gene PIK3CA. Disease squamous cell carcinoma associates Gene CTSC. Disease squamous cell carcinoma associates Gene GJB2. Disease squamous cell carcinoma associates Gene TP53. Disease squamous cell carcinoma associates Gene CYP1B1. Variant rs6059655 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene KRT5. Disease squamous cell carcinoma associates Gene BNC2. Disease squamous cell carcinoma associates Gene HERC2. Gene MIR485 associates Disease squamous cell carcinoma. Variant rs12203592 associates Disease squamous cell carcinoma. Gene MIR494 associates Disease squamous cell carcinoma. Variant rs9383064 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene SLC6A17. Disease squamous cell carcinoma associates Gene COL17A1. Disease squamous cell carcinoma associates Gene EPB41L1. Disease squamous cell carcinoma associates Gene XPA. Variant rs35063026 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene GATA1. Gene MIR497 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene TNFRSF10B. Disease squamous cell carcinoma associates Gene GTF2E2. Disease squamous cell carcinoma associates Gene ERCC3. Disease squamous cell carcinoma associates Gene XPC. Disease squamous cell carcinoma associates Gene ERCC2. Disease squamous cell carcinoma associates Gene LMNA. Variant rs16891982 associates Disease squamous cell carcinoma. Variant rs4455710 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene AHR. Disease squamous cell carcinoma associates Gene COL7A1. Variant rs4268748 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene ATR. Variant rs10810657 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene FOXP1. Disease squamous cell carcinoma associates Gene SLC45A2. Disease squamous cell carcinoma associates Gene CHEK2. Disease squamous cell carcinoma associates Gene GTF2H5. Disease squamous cell carcinoma associates Gene SLC17A9. Variant rs62246017 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene NOTCH1. Disease squamous cell carcinoma associates Gene FDPS. Disease squamous cell carcinoma associates Gene ERCC5. Disease squamous cell carcinoma associates Gene GJB6. Disease squamous cell carcinoma associates Gene ERCC4. Disease squamous cell carcinoma associates Gene PPARGC1B. Variant rs121913431 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene KRT14. Gene MIR363 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene BLM. Variant rs1246946 associates Disease squamous cell carcinoma. Variant rs6791479 associates Disease squamous cell carcinoma. Variant rs13301660 associates Disease squamous cell carcinoma. Variant rs62209647 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene TERT. Variant rs149906873 associates Disease squamous cell carcinoma. Variant rs11571833 associates Disease squamous cell carcinoma. Variant rs267598140 associates Disease squamous cell carcinoma. Gene MIR149 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene DKC1. Disease squamous cell carcinoma associates Gene LRFN2. Variant rs121913230 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene PTEN. Disease squamous cell carcinoma associates Gene CDKN2A. Variant rs17879961 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene LAMC2. Gene MIR155 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene SMARCAD1. Disease squamous cell carcinoma associates Gene COL14A1. Gene MIR142 associates Disease squamous cell carcinoma. Variant rs35324266 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene NUTM1. Gene MIR10B associates Disease squamous cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with lung squamous cell carcinoma and squamous cell carcinoma. Given list is: DTNB, BRCA2, CCDC33, IGF1R, XBP1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048756.0760028}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae099d2bd8484267d72b25aa21caa1bb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae099d2bd8484267d72b25aa21caa1bb/output.pkl Binary files differnew file mode 100644 index 0000000..6634bf1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae099d2bd8484267d72b25aa21caa1bb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae791790cb8b6f073b7e5ff094affbf1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae791790cb8b6f073b7e5ff094affbf1/metadata.json new file mode 100644 index 0000000..435ce18 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae791790cb8b6f073b7e5ff094affbf1/metadata.json @@ -0,0 +1 @@ +{"duration": 12.921733617782593, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with age-related hearing impairment and skin sensitivity to sun. Given list is: rs1126809, rs416223, rs12722502, rs9419958, rs1333049'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049160.5650976}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae791790cb8b6f073b7e5ff094affbf1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae791790cb8b6f073b7e5ff094affbf1/output.pkl Binary files differnew file mode 100644 index 0000000..010265e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae791790cb8b6f073b7e5ff094affbf1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae97b5deb01a2ed9e08bd1ee815191d6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae97b5deb01a2ed9e08bd1ee815191d6/metadata.json new file mode 100644 index 0000000..d698216 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae97b5deb01a2ed9e08bd1ee815191d6/metadata.json @@ -0,0 +1 @@ +{"duration": 26.015505075454712, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with Crohn's disease and sclerosing cholangitis. Given list is: rs1047891, rs9268905, rs3197999, rs1025128, rs4624820\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757993067.926271}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae97b5deb01a2ed9e08bd1ee815191d6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae97b5deb01a2ed9e08bd1ee815191d6/output.pkl Binary files differnew file mode 100644 index 0000000..1a2fcfe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ae97b5deb01a2ed9e08bd1ee815191d6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aea3d132be43fd670736b79221d173ee/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aea3d132be43fd670736b79221d173ee/metadata.json new file mode 100644 index 0000000..836a1a3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aea3d132be43fd670736b79221d173ee/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6173009872436523, "input_args": {"instruction": "\"Context: Disease Hodgkin's lymphoma associates Gene TCF4. Disease Hodgkin's lymphoma associates Gene TCF3. Variant rs6903608 associates Disease Hodgkin's lymphoma. Variant rs9482849 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene GATA3. Variant rs3806624 associates Disease Hodgkin's lymphoma. Variant rs56391007 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene FAS. Variant rs4459895 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene COL14A1. Variant rs501764 associates Disease Hodgkin's lymphoma. Variant rs7745098 associates Disease Hodgkin's lymphoma. Variant rs3781093 associates Disease Hodgkin's lymphoma. Variant rs121913527 associates Disease Hodgkin's lymphoma. Variant rs2069757 associates Disease Hodgkin's lymphoma. Variant rs6928977 associates Disease Hodgkin's lymphoma. Variant rs1002658 associates Disease Hodgkin's lymphoma. Variant rs7111520 associates Disease Hodgkin's lymphoma. Variant rs2425752 associates Disease Hodgkin's lymphoma. Variant rs747694886 associates Disease Hodgkin's lymphoma. Variant rs1860661 associates Disease Hodgkin's lymphoma. Variant rs2248462 associates Disease Hodgkin's lymphoma. Variant rs649775 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene TP53. Disease Hodgkin's lymphoma associates Gene SOCS1. Variant rs2019960 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene DEF6. Variant rs387906223 associates Disease Hodgkin's lymphoma. Gene MIR106B associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene MDM2. Disease Hodgkin's lymphoma associates Gene STAT3. Disease Hodgkin's lymphoma associates Gene HBS1L. Variant rs1432295 associates Disease Hodgkin's lymphoma. Gene MIR520A associates Disease Hodgkin's lymphoma. Gene MIR196A1 associates Disease Hodgkin's lymphoma. Gene MIR92A2 associates Disease Hodgkin's lymphoma. Gene MIR19B2 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene RNF43. Disease Hodgkin's lymphoma associates Gene CASP10. Gene MIR510 associates Disease Hodgkin's lymphoma. Gene MIR92A1 associates Disease Hodgkin's lymphoma. Gene MIR106A associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene NCOA5. Disease Hodgkin's lymphoma associates Gene CDKN2A. Variant rs2395185 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene CD70. Disease Hodgkin's lymphoma associates Gene FASLG. Variant rs6565176 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene TCF4. Disease Hodgkin's lymphoma associates Gene TCF3. Variant rs6903608 associates Disease Hodgkin's lymphoma. Variant rs9482849 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene GATA3. Variant rs3806624 associates Disease Hodgkin's lymphoma. Variant rs56391007 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene FAS. Variant rs4459895 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene COL14A1. Variant rs501764 associates Disease Hodgkin's lymphoma. Variant rs7745098 associates Disease Hodgkin's lymphoma. Variant rs3781093 associates Disease Hodgkin's lymphoma. Variant rs121913527 associates Disease Hodgkin's lymphoma. Variant rs2069757 associates Disease Hodgkin's lymphoma. Variant rs6928977 associates Disease Hodgkin's lymphoma. Variant rs1002658 associates Disease Hodgkin's lymphoma. Variant rs7111520 associates Disease Hodgkin's lymphoma. Variant rs2425752 associates Disease Hodgkin's lymphoma. Variant rs747694886 associates Disease Hodgkin's lymphoma. Variant rs1860661 associates Disease Hodgkin's lymphoma. Variant rs2248462 associates Disease Hodgkin's lymphoma. Variant rs649775 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene TP53. Disease Hodgkin's lymphoma associates Gene SOCS1. Variant rs2019960 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene DEF6. Variant rs387906223 associates Disease Hodgkin's lymphoma. Gene MIR106B associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene MDM2. Disease Hodgkin's lymphoma associates Gene STAT3. Disease Hodgkin's lymphoma associates Gene HBS1L. Variant rs1432295 associates Disease Hodgkin's lymphoma. Gene MIR520A associates Disease Hodgkin's lymphoma. Gene MIR196A1 associates Disease Hodgkin's lymphoma. Gene MIR92A2 associates Disease Hodgkin's lymphoma. Gene MIR19B2 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene RNF43. Disease Hodgkin's lymphoma associates Gene CASP10. Gene MIR510 associates Disease Hodgkin's lymphoma. Gene MIR92A1 associates Disease Hodgkin's lymphoma. Gene MIR106A associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene NCOA5. Disease Hodgkin's lymphoma associates Gene CDKN2A. Variant rs2395185 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene CD70. Disease Hodgkin's lymphoma associates Gene FASLG. Variant rs6565176 associates Disease Hodgkin's lymphoma. \\nQuestion: Out of the given list, which Gene is associated with Hodgkin's lymphoma, nodular sclerosis and Hodgkin's lymphoma. Given list is: HLA-DQB2, FADS2, GATA3, TM6SF2, CFH\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048189.8915143}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aea3d132be43fd670736b79221d173ee/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aea3d132be43fd670736b79221d173ee/output.pkl Binary files differnew file mode 100644 index 0000000..8e80254 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aea3d132be43fd670736b79221d173ee/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aebb226ce94b7c14f15f5c0054e7dc87/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aebb226ce94b7c14f15f5c0054e7dc87/metadata.json new file mode 100644 index 0000000..df55d4d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aebb226ce94b7c14f15f5c0054e7dc87/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46277880668640137, "input_args": {"instruction": "'Context: Variant rs10794501 associates Disease rheumatic heart disease. Gene MIR1299 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR3909 associates Disease rheumatic heart disease. Disease rheumatic heart disease associates Gene PBX2. Gene MIR205 associates Disease rheumatic heart disease. Disease ontology identifier of rheumatic heart disease is DOID:0050827. Disease rheumatic heart disease resembles Disease rheumatic fever. Variant rs2187668 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene SYNPR. Gene MIR21 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with rheumatic heart disease and autoimmune hepatitis. Given list is: SPRED2, TTLL5, TLR1, ALDH1A2, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047875.0512104}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aebb226ce94b7c14f15f5c0054e7dc87/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aebb226ce94b7c14f15f5c0054e7dc87/output.pkl Binary files differnew file mode 100644 index 0000000..cb1e616 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aebb226ce94b7c14f15f5c0054e7dc87/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aec12d36df75a6915608fa80fc6b77c9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aec12d36df75a6915608fa80fc6b77c9/metadata.json new file mode 100644 index 0000000..082e061 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aec12d36df75a6915608fa80fc6b77c9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7090499401092529, "input_args": {"instruction": "'Context: Disease duodenal ulcer associates Gene PLA2G4A. Variant rs505922 associates Disease duodenal ulcer. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene JRK. Disease duodenal ulcer associates Gene EP300. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer localizes Anatomy pancreatic juice. Disease duodenal ulcer localizes Anatomy ventral pancreatic duct. Disease duodenal ulcer localizes Anatomy common bile duct. Disease duodenal ulcer localizes Anatomy secretion of exocrine gland. Disease duodenal ulcer presents Symptom Abdominal Pain. Variant rs9581943 associates Disease pancreatic carcinoma. Variant rs543259829 associates Disease pancreatic carcinoma. Variant rs1568205026 associates Disease pancreatic carcinoma. Variant rs9543325 associates Disease pancreatic carcinoma. Variant rs886038068 associates Disease pancreatic carcinoma. Variant rs587776650 associates Disease pancreatic carcinoma. Variant rs11876384 associates Disease pancreatic carcinoma. Variant chr14:104000802 associates Disease pancreatic carcinoma. Variant rs139569694 associates Disease pancreatic carcinoma. Variant rs587780192 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene KRT8. Variant rs81002812 associates Disease pancreatic carcinoma. Variant rs587781633 associates Disease pancreatic carcinoma. Variant rs879254095 associates Disease pancreatic carcinoma. Variant rs886059208 associates Disease pancreatic carcinoma. Variant rs886059211 associates Disease pancreatic carcinoma. Variant rs505922 associates Disease pancreatic carcinoma. Variant rs796761323 associates Disease pancreatic carcinoma. Variant rs1486134 associates Disease pancreatic carcinoma. Variant rs1064794204 associates Disease pancreatic carcinoma. Variant rs4795218 associates Disease pancreatic carcinoma. Variant rs542392980 associates Disease pancreatic carcinoma. Variant rs66562280 associates Disease pancreatic carcinoma. Variant rs539739051 associates Disease pancreatic carcinoma. Variant rs387906389 associates Disease pancreatic carcinoma. Variant rs80358972 associates Disease pancreatic carcinoma. Variant rs17688601 associates Disease pancreatic carcinoma. Variant rs139770721 associates Disease pancreatic carcinoma. Variant rs2080764943 associates Disease pancreatic carcinoma. Variant rs16986825 associates Disease pancreatic carcinoma. Variant rs60579835 associates Disease pancreatic carcinoma. Variant rs9854771 associates Disease pancreatic carcinoma. Variant rs587778337 associates Disease pancreatic carcinoma. Variant rs9554197 associates Disease pancreatic carcinoma. Variant rs80359306 associates Disease pancreatic carcinoma. Variant rs13303010 associates Disease pancreatic carcinoma. Variant rs548068667 associates Disease pancreatic carcinoma. Variant rs147621330 associates Disease pancreatic carcinoma. Variant rs555607708 associates Disease pancreatic carcinoma. Variant rs121434220 associates Disease pancreatic carcinoma. Variant rs41293511 associates Disease pancreatic carcinoma. Variant rs10094872 associates Disease pancreatic carcinoma. Variant rs1555162597 associates Disease pancreatic carcinoma. Variant rs183117027 associates Disease pancreatic carcinoma. Variant rs41286296 associates Disease pancreatic carcinoma. Variant rs80359479 associates Disease pancreatic carcinoma. Variant rs80357664 associates Disease pancreatic carcinoma. Variant rs80338965 associates Disease pancreatic carcinoma. Variant rs121434388 associates Disease pancreatic carcinoma. Variant rs11655237 associates Disease pancreatic carcinoma. Variant rs137853079 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene ABO. Variant rs121913049 associates Disease pancreatic carcinoma. \\nQuestion: Out of the given list, which Gene is associated with duodenal ulcer and pancreatic carcinoma. Given list is: YLPM1, CFH, ABO, KALRN, STAT6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990060.6194518}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aec12d36df75a6915608fa80fc6b77c9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aec12d36df75a6915608fa80fc6b77c9/output.pkl Binary files differnew file mode 100644 index 0000000..d1c04d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aec12d36df75a6915608fa80fc6b77c9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aef048584505c40b56ffb6f4ff29341a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aef048584505c40b56ffb6f4ff29341a/metadata.json new file mode 100644 index 0000000..d203f77 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aef048584505c40b56ffb6f4ff29341a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6087770462036133, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myelodysplastic syndrome and diffuse large B-cell lymphoma. Given list is: MIF, TDP2, TMEM71, HLA-DQA1, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989832.121992}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aef048584505c40b56ffb6f4ff29341a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aef048584505c40b56ffb6f4ff29341a/output.pkl Binary files differnew file mode 100644 index 0000000..56d88f6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/aef048584505c40b56ffb6f4ff29341a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af1d9fae5b9def99eeee0c6d98214c0c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af1d9fae5b9def99eeee0c6d98214c0c/metadata.json new file mode 100644 index 0000000..3d15def --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af1d9fae5b9def99eeee0c6d98214c0c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6107034683227539, "input_args": {"instruction": "'Context: Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-DQA2. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-G. Variant rs138885312 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs9272050 associates Disease cervix carcinoma. Variant rs3131631 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs115137622 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Variant rs114115115 associates Disease cervix carcinoma. Variant rs28752857 associates Disease cervix carcinoma. Variant rs116149201 associates Disease cervix carcinoma. Variant rs8067378 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Variant rs10175462 associates Disease cervix carcinoma. Variant rs9272143 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs3130218 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Gene MIR16-2 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Gene MIR381 associates Disease cervix carcinoma. Gene MIR590 associates Disease cervix carcinoma. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Disease cutaneous lupus erythematosus associates Gene CSNK2B. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Gene MIR31 associates Disease cutaneous lupus erythematosus. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and cutaneous lupus erythematosus. Given list is: PRKN, HLA-DPA1, VAV3, RBFOX1, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048186.3746395}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af1d9fae5b9def99eeee0c6d98214c0c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af1d9fae5b9def99eeee0c6d98214c0c/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af1d9fae5b9def99eeee0c6d98214c0c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af46c4b390607d2418d8bc25ff7bc497/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af46c4b390607d2418d8bc25ff7bc497/metadata.json new file mode 100644 index 0000000..14fe080 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af46c4b390607d2418d8bc25ff7bc497/metadata.json @@ -0,0 +1 @@ +{"duration": 0.583867073059082, "input_args": {"instruction": "'Context: Disease nephrotic syndrome associates Gene HLA-DQB1. Variant HLA-DQB1*03 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SLC35A2. Variant HLA-DQA1*01 associates Disease nephrotic syndrome. Variant HLA-DQB1*03:03 associates Disease nephrotic syndrome. Variant HLA-DQA1*02:01 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ANLN. Variant rs570583897 associates Disease nephrotic syndrome. Variant rs771769006 associates Disease nephrotic syndrome. Variant rs769259446 associates Disease nephrotic syndrome. Variant rs786204632 associates Disease nephrotic syndrome. Variant rs1569495819 associates Disease nephrotic syndrome. Variant rs766881276 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NOS1AP. Variant rs759043857 associates Disease nephrotic syndrome. Variant rs1480919035 associates Disease nephrotic syndrome. Variant rs769834604 associates Disease nephrotic syndrome. Variant rs1568296260 associates Disease nephrotic syndrome. Variant rs757674160 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene CFAP418. Disease nephrotic syndrome associates Gene COL4A4. Variant rs369363545 associates Disease nephrotic syndrome. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A5. Disease nephrotic syndrome associates Gene COL4A3. Variant rs376983109 associates Disease nephrotic syndrome. Variant rs751611955 associates Disease nephrotic syndrome. Variant rs573527081 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Variant rs749779208 associates Disease nephrotic syndrome. Variant rs776859868 associates Disease nephrotic syndrome. Variant rs199506378 associates Disease nephrotic syndrome. Variant rs529211517 associates Disease nephrotic syndrome. Variant rs797044995 associates Disease nephrotic syndrome. Variant rs762704370 associates Disease nephrotic syndrome. Variant rs797044992 associates Disease nephrotic syndrome. Variant rs369558225 associates Disease nephrotic syndrome. Variant rs769133638 associates Disease nephrotic syndrome. Variant rs959473971 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP85. Variant rs745561217 associates Disease nephrotic syndrome. Variant rs371914169 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene FOXP3. Variant rs370860586 associates Disease nephrotic syndrome. Variant rs797044994 associates Disease nephrotic syndrome. Variant rs2079386835 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TBX18. Variant rs149560153 associates Disease nephrotic syndrome. Variant rs1054215531 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IFIH1. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Variant rs370940497 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene APOA1. Variant rs2068656107 associates Disease nephrotic syndrome. Variant rs1265889 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TNFSF15. Disease nephrotic syndrome associates Gene ZFPM2. Disease nephrotic syndrome associates Gene SLC17A5. Variant rs781347673 associates Disease nephrotic syndrome. Variant rs2045467851 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene IFT172. Variant rs1890103037 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SAA1. Variant rs2637678 associates Disease nephrotic syndrome. Variant rs974891221 associates Disease nephrotic syndrome. Variant rs374099285 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene CHST14. Disease nephrotic syndrome associates Gene CASP10. Disease nephrotic syndrome associates Gene IFT74. Variant rs1973238637 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Variant rs776254762 associates Disease nephrotic syndrome. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with nephrotic syndrome and autoimmune hepatitis. Given list is: TNIP1, CACNA1C, SLC2A9, HLA-DQB1, CSNK2B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990130.864654}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af46c4b390607d2418d8bc25ff7bc497/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af46c4b390607d2418d8bc25ff7bc497/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/af46c4b390607d2418d8bc25ff7bc497/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b0165f2786079a454c304cdc37bf456c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b0165f2786079a454c304cdc37bf456c/metadata.json new file mode 100644 index 0000000..5e08e60 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b0165f2786079a454c304cdc37bf456c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6147394180297852, "input_args": {"instruction": "'Context: Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs13074711 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TCF7L2. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs16991615 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs2747652 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene PEX14. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs35840638 associates Disease estrogen-receptor negative breast cancer. Variant rs11571833 associates Disease estrogen-receptor negative breast cancer. Variant rs1432679 associates Disease estrogen-receptor negative breast cancer. Variant rs12710696 associates Disease estrogen-receptor negative breast cancer.. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene USHBP1. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant rs62025270 associates Disease idiopathic pulmonary fibrosis.. Variant rs79684490 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Variant rs74614704 associates Disease idiopathic pulmonary fibrosis. Variant rs7725218 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene RTEL1. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and idiopathic pulmonary fibrosis. Given list is: IL23R, BTBD9, SFRP4, PHGDH, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048673.423004}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b0165f2786079a454c304cdc37bf456c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b0165f2786079a454c304cdc37bf456c/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b0165f2786079a454c304cdc37bf456c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b12491eedf698b9417b36e350de928e0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b12491eedf698b9417b36e350de928e0/metadata.json new file mode 100644 index 0000000..9ec7ca2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b12491eedf698b9417b36e350de928e0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5150253772735596, "input_args": {"instruction": "'Context: Disease oral cavity cancer associates Gene HLA-DQB1. Variant rs121913281 associates Disease oral cavity cancer. Variant rs8181047 associates Disease oral cavity cancer. Variant rs1049055 associates Disease oral cavity cancer. Variant rs121913277 associates Disease oral cavity cancer. Variant rs121909224 associates Disease oral cavity cancer. Variant rs6547741 associates Disease oral cavity cancer. Disease oral cavity cancer associates Gene GPN1.. Disease oropharynx cancer associates Gene HLA-DQB1. Variant rs13211972 associates Disease oropharynx cancer. Variant rs2523679 associates Disease oropharynx cancer. Disease oropharynx cancer associates Gene ADH1B.. Variant rs9266329 associates Disease oropharynx cancer. \\nQuestion: Out of the given list, which Gene is associated with oral cavity cancer and oropharynx cancer. Given list is: GCKR, HLA-DQB1, CACNA1S, TNFSF15, RAD51B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989765.5453877}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b12491eedf698b9417b36e350de928e0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b12491eedf698b9417b36e350de928e0/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b12491eedf698b9417b36e350de928e0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b135e1d0bacf55fce0871d0fc55b8953/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b135e1d0bacf55fce0871d0fc55b8953/metadata.json new file mode 100644 index 0000000..6df641a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b135e1d0bacf55fce0871d0fc55b8953/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5598785877227783, "input_args": {"instruction": "'Context: Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs11610143 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs121913476 associates Disease lung adenocarcinoma. Variant rs11591710 associates Disease lung adenocarcinoma. Variant rs11554290 associates Disease lung adenocarcinoma. Variant rs121913499 associates Disease lung adenocarcinoma. Gene MIR101-1 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs1057520003 associates Disease lung adenocarcinoma. Variant rs863224451 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs1057520005 associates Disease lung adenocarcinoma. Variant rs1057520001 associates Disease lung adenocarcinoma. Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs121913496 associates Disease lung adenocarcinoma. Variant rs1057519934 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs1057520004 associates Disease lung adenocarcinoma. Variant rs1057520006 associates Disease lung adenocarcinoma. Gene MIR34C associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs1057520012 associates Disease lung adenocarcinoma. Gene MIR34A associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs1057519935 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene C11orf65. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs121913385 associates Disease lung adenocarcinoma. Variant rs1057520002 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs371769427 associates Disease lung adenocarcinoma. Variant rs380286 associates Disease lung adenocarcinoma. Variant rs1057519923 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs866775781 associates Disease lung adenocarcinoma. Variant rs1057519918 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs530941076 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs1057520008 associates Disease lung adenocarcinoma. Variant rs121913370 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs121913338 associates Disease lung adenocarcinoma. Variant rs11540652 associates Disease lung adenocarcinoma. Variant rs1057519045 associates Disease lung adenocarcinoma. Variant rs1057520017 associates Disease lung adenocarcinoma. Variant rs1057519926 associates Disease lung adenocarcinoma. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Gene MIR29A associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Gene MIR142 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs2609259 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Gene MIR155 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs62025270 associates Disease idiopathic pulmonary fibrosis.. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Gene MIR29C associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and idiopathic pulmonary fibrosis. Given list is: SLC14A2, SLC14A2, MTTP, PSCA, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048360.973536}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b135e1d0bacf55fce0871d0fc55b8953/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b135e1d0bacf55fce0871d0fc55b8953/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b135e1d0bacf55fce0871d0fc55b8953/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b1d767fc51c834774df2f1595b850172/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b1d767fc51c834774df2f1595b850172/metadata.json new file mode 100644 index 0000000..c29a6e4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b1d767fc51c834774df2f1595b850172/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7178235054016113, "input_args": {"instruction": "\"Context: Variant rs1343151; rs12567232; rs2902440; rs11209003; rs2201841; rs1004819; rs11465804; rs6669582; rs10789230; rs11209002; rs2064689; rs11465802; rs10889677; rs11209026; rs10889676; rs9988642 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Variant rs4263839 associates Disease Crohn's disease. Variant rs2266959 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs9271060 associates Disease Crohn's disease. Variant rs113973829 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs2058660 associates Disease Crohn's disease. Variant rs11175593 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs11465804 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs12677663 associates Disease Crohn's disease. Variant rs11879191 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs5763767 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs6738825 associates Disease Crohn's disease. Variant rs28449958 associates Disease Crohn's disease. Variant rs6651252 associates Disease Crohn's disease. Variant rs4266763 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Variant rs9286879 associates Disease Crohn's disease. Variant rs11741861 associates Disease Crohn's disease. Variant rs11581607 associates Disease Crohn's disease. Variant rs11871801 associates Disease Crohn's disease. Variant rs415890 associates Disease Crohn's disease. Variant rs11742570 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs2945412 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs1998598 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs12663356 associates Disease Crohn's disease. Variant rs1260326 associates Disease Crohn's disease. Variant rs12422544 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs2823286 associates Disease Crohn's disease. Variant rs17694108 associates Disease Crohn's disease. Variant rs6863411 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs864745 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs1250546 associates Disease Crohn's disease. Variant rs4787458 associates Disease Crohn's disease. Variant rs9868809 associates Disease Crohn's disease. Variant rs1799964 associates Disease Crohn's disease. Variant rs6908425 associates Disease Crohn's disease. Variant rs4821544 associates Disease Crohn's disease. Variant rs4871611 associates Disease Crohn's disease. Variant rs13003464 associates Disease Crohn's disease. Variant rs148319899 associates Disease Crohn's disease. Variant rs80262450 associates Disease Crohn's disease. Variant rs6708413 associates Disease Crohn's disease. Variant rs4409764 associates Disease Crohn's disease. Variant rs12942547 associates Disease Crohn's disease. Variant rs6074022 associates Disease Crohn's disease. Variant rs1250550 associates Disease Crohn's disease. Variant rs4796791 associates Disease Crohn's disease. Variant rs13204742 associates Disease Crohn's disease. Variant rs6659932 associates Disease Crohn's disease. Variant rs1250544 associates Disease Crohn's disease. Variant rs4768236 associates Disease Crohn's disease. Variant rs4957294 associates Disease Crohn's disease. Variant rs13204048 associates Disease Crohn's disease. Variant rs1801274 associates Disease ankylosing spondylitis. Variant rs4676410 associates Disease ankylosing spondylitis. Variant rs8070463 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs1250550 associates Disease ankylosing spondylitis. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs13001372 associates Disease ankylosing spondylitis. Variant rs6871626 associates Disease ankylosing spondylitis. Variant rs17765610 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Variant rs17192932 associates Disease ankylosing spondylitis. Variant rs117486637 associates Disease ankylosing spondylitis. Variant rs2910686 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs6600247 associates Disease ankylosing spondylitis. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs12141575 associates Disease ankylosing spondylitis. Variant rs4552569 associates Disease ankylosing spondylitis. Variant rs6556416 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs4129267 associates Disease ankylosing spondylitis. Variant rs11190133 associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Variant rs378108 associates Disease ankylosing spondylitis. Variant rs11249215 associates Disease ankylosing spondylitis. Variant rs2394250 associates Disease ankylosing spondylitis. Variant rs61752717 associates Disease ankylosing spondylitis. Variant rs12615545 associates Disease ankylosing spondylitis. Variant rs1128905 associates Disease ankylosing spondylitis. Variant rs10045403 associates Disease ankylosing spondylitis. Variant rs10865331 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Variant rs2297909 associates Disease ankylosing spondylitis. Variant rs27529 associates Disease ankylosing spondylitis. Variant HLA-B*2705 associates Disease ankylosing spondylitis. Variant rs11624293 associates Disease ankylosing spondylitis. Variant rs27434 associates Disease ankylosing spondylitis. Variant HLA-B*2702 associates Disease ankylosing spondylitis. Variant rs7743761 associates Disease ankylosing spondylitis. Variant rs2242944 associates Disease ankylosing spondylitis. \\nQuestion: Out of the given list, which Variant is associated with Crohn's disease and ankylosing spondylitis. Given list is: rs8077245, rs11712066, rs11209026, rs10830962, rs6010620\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049042.7699344}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b1d767fc51c834774df2f1595b850172/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b1d767fc51c834774df2f1595b850172/output.pkl Binary files differnew file mode 100644 index 0000000..4b6c0ad --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b1d767fc51c834774df2f1595b850172/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b211044a5749f1d14dc52f4dffc60592/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b211044a5749f1d14dc52f4dffc60592/metadata.json new file mode 100644 index 0000000..8df27f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b211044a5749f1d14dc52f4dffc60592/metadata.json @@ -0,0 +1 @@ +{"duration": 0.677166223526001, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and anti-neutrophil antibody associated vasculitis. Given list is: rs6679677, rs12187903, rs1333047, rs11585651, rs55730499'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049051.6426647}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b211044a5749f1d14dc52f4dffc60592/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b211044a5749f1d14dc52f4dffc60592/output.pkl Binary files differnew file mode 100644 index 0000000..ccba2f6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b211044a5749f1d14dc52f4dffc60592/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b260a9a84e4513b78f19179c6b46fe13/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b260a9a84e4513b78f19179c6b46fe13/metadata.json new file mode 100644 index 0000000..e030694 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b260a9a84e4513b78f19179c6b46fe13/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4459261894226074, "input_args": {"instruction": "'Context: Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs3130564 associates Disease cutaneous lupus erythematosus. Variant rs1233491 associates Disease cutaneous lupus erythematosus. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease lymphocytic colitis. Disease collagenous colitis isa Disease microscopic colitis. \\nQuestion: Out of the given list, which Variant is associated with cutaneous lupus erythematosus and collagenous colitis. Given list is: rs4939827, rs3197999, rs3739821, rs2187668, rs1975197'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048994.1714156}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b260a9a84e4513b78f19179c6b46fe13/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b260a9a84e4513b78f19179c6b46fe13/output.pkl Binary files differnew file mode 100644 index 0000000..1bf1c25 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b260a9a84e4513b78f19179c6b46fe13/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b27c76848c51d35cf35dbd0c1236c27f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b27c76848c51d35cf35dbd0c1236c27f/metadata.json new file mode 100644 index 0000000..9374a65 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b27c76848c51d35cf35dbd0c1236c27f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.490842342376709, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with herpes zoster and myelodysplastic syndrome. Given list is: HLA-B, TMEM71, KITLG, PTPRD, AHR'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990013.0813231}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b27c76848c51d35cf35dbd0c1236c27f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b27c76848c51d35cf35dbd0c1236c27f/output.pkl Binary files differnew file mode 100644 index 0000000..72aa652 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b27c76848c51d35cf35dbd0c1236c27f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b280dcda16bc4a427956743a0e70a53b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b280dcda16bc4a427956743a0e70a53b/metadata.json new file mode 100644 index 0000000..fb1e5e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b280dcda16bc4a427956743a0e70a53b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7455298900604248, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with gastric fundus cancer and atrophic gastritis. Given list is: PSCA, PLG, IL23R, ABO, RP1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050452.6393697}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b280dcda16bc4a427956743a0e70a53b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b280dcda16bc4a427956743a0e70a53b/output.pkl Binary files differnew file mode 100644 index 0000000..bb855d8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b280dcda16bc4a427956743a0e70a53b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e39031ed406b5a743fcc879404508b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e39031ed406b5a743fcc879404508b/metadata.json new file mode 100644 index 0000000..dd8117a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e39031ed406b5a743fcc879404508b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8578071594238281, "input_args": {"instruction": "'Context: Disease keratosis associates Gene KRT16. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene KRT6B. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene PERP. Disease squamous cell papilloma resembles Disease keratosis. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene DSG1. Disease keratosis associates Gene SMARCAD1. Disease keratosis associates Gene KDSR. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene SASH1. Disease keratosis localizes Anatomy mucosa of larynx. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene GJB2. Disease epidermodysplasia verruciformis resembles Disease keratosis. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene GJB3. Disease keratosis associates Gene VPS33B. Disease keratosis associates Gene CAST. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene GJA1. Disease keratosis associates Gene KANK2. Disease keratosis resembles Disease lip cancer. Disease keratosis associates Gene ATP2A2. Disease keratosis localizes Anatomy laryngeal vocal fold. Disease keratosis presents Symptom Skin Manifestations. Disease keratosis associates Gene SLURP1. Disease keratosis localizes Anatomy mouth mucosa. Disease keratosis associates Gene GJB6. Disease UV-sensitive syndrome isa Disease skin disease. Disease UV-sensitive syndrome associates Gene ERCC8.. \\nQuestion: Out of the given list, which Variant is associated with keratinocyte carcinoma\"@e and skin sensitivity to sun. Given list is: rs254020, rs4625, rs6059655, rs11738191, rs2963222'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049050.9458396}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e39031ed406b5a743fcc879404508b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e39031ed406b5a743fcc879404508b/output.pkl Binary files differnew file mode 100644 index 0000000..6837088 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e39031ed406b5a743fcc879404508b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e5b6481968dab473cdc0658e437330/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e5b6481968dab473cdc0658e437330/metadata.json new file mode 100644 index 0000000..6a33d46 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e5b6481968dab473cdc0658e437330/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6940124034881592, "input_args": {"instruction": "'Context: Disease triple-receptor negative breast cancer associates Gene TP53. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs10771399 associates Disease triple-receptor negative breast cancer. Disease lung adenocarcinoma associates Gene RTEL1. Gene MIR519D associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Gene MIR487B associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Gene MIR3941 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Gene MIR449B associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Gene MIR361 associates Disease lung adenocarcinoma. Gene MIR590 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs56113850 associates Disease lung adenocarcinoma. Gene MIR101-1 associates Disease lung adenocarcinoma. Variant rs876659675 associates Disease lung adenocarcinoma. Gene MIR592 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Gene MIR331 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Gene MIR551B associates Disease lung adenocarcinoma. Gene MIR485 associates Disease lung adenocarcinoma. Gene MIR483 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs1057519983 associates Disease lung adenocarcinoma. Gene MIR494 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs1057519984 associates Disease lung adenocarcinoma. Variant rs1057519985 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Gene MIR519A1 associates Disease lung adenocarcinoma. Variant rs1057519981 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Gene MIR411 associates Disease lung adenocarcinoma. Variant rs876659802 associates Disease lung adenocarcinoma. Gene MIR34C associates Disease lung adenocarcinoma. Gene MIR423 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs1057519982 associates Disease lung adenocarcinoma. Variant rs1057519989 associates Disease lung adenocarcinoma. Variant rs1057519986 associates Disease lung adenocarcinoma. Variant rs397507484 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene BTNL2. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs587782664 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Gene MIR454 associates Disease lung adenocarcinoma. Variant rs1057519988 associates Disease lung adenocarcinoma. Gene MIR96 associates Disease lung adenocarcinoma. Variant rs1057519987 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Gene MIR33B associates Disease lung adenocarcinoma. Variant rs876660807 associates Disease lung adenocarcinoma. Variant rs397516896 associates Disease lung adenocarcinoma. Variant rs377767347 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs1057519786 associates Disease lung adenocarcinoma. Variant rs1057519785 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Gene MIR511 associates Disease lung adenocarcinoma. Variant rs1057519934 associates Disease lung adenocarcinoma. Variant rs1057519856 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs31489 associates Disease lung adenocarcinoma. Variant rs1057519788 associates Disease lung adenocarcinoma. Variant rs1057519998 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs17038564 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and lung adenocarcinoma. Given list is: TERT, POU5F1B, PLG, IGF1R, LRMDA'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989523.6243808}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e5b6481968dab473cdc0658e437330/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e5b6481968dab473cdc0658e437330/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b2e5b6481968dab473cdc0658e437330/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3006284ac6545fd7fde248e69117ec8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3006284ac6545fd7fde248e69117ec8/metadata.json new file mode 100644 index 0000000..0531dd3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3006284ac6545fd7fde248e69117ec8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5684716701507568, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and estrogen-receptor negative breast cancer. Given list is: BABAM1, ABO, TERT, PHACTR1, DTNB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048001.2317402}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3006284ac6545fd7fde248e69117ec8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3006284ac6545fd7fde248e69117ec8/output.pkl Binary files differnew file mode 100644 index 0000000..2e81225 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3006284ac6545fd7fde248e69117ec8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b30f74077fbb3d96ee8d9c9138b3f530/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b30f74077fbb3d96ee8d9c9138b3f530/metadata.json new file mode 100644 index 0000000..d5acbd6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b30f74077fbb3d96ee8d9c9138b3f530/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8217079639434814, "input_args": {"instruction": "'Context: Variant rs1057519719 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs36600 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs115100928 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs144943614 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs144433536 associates Disease lung carcinoma. Variant rs75932146 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs1051730 associates Disease lung carcinoma. Variant rs66488313 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs11571833 associates Disease lung carcinoma. Variant rs4946256 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs11639372 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs148934350 associates Disease lung carcinoma. Variant rs397516895 associates Disease lung carcinoma. Variant rs1050171 associates Disease lung carcinoma. Variant rs549219764 associates Disease lung carcinoma. Variant rs397517138 associates Disease lung carcinoma. Variant rs31489 associates Disease lung carcinoma. Variant rs121913530 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Disease lung carcinoma associates Gene BTN3A1. Variant rs1562939198 associates Disease lung carcinoma. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and triple-receptor negative breast cancer. Given list is: TERT, SLC2A9, MYBPC3, HLA-DQA1, WNT10A'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050444.1739464}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b30f74077fbb3d96ee8d9c9138b3f530/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b30f74077fbb3d96ee8d9c9138b3f530/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b30f74077fbb3d96ee8d9c9138b3f530/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b36a7dbb9cfa35e21029e010b8da5714/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b36a7dbb9cfa35e21029e010b8da5714/metadata.json new file mode 100644 index 0000000..339f8d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b36a7dbb9cfa35e21029e010b8da5714/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7026031017303467, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and myelodysplastic syndrome. Given list is: IL23R, TERT, HLA-B, HLA-DQA1, TNXB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048302.1096935}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b36a7dbb9cfa35e21029e010b8da5714/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b36a7dbb9cfa35e21029e010b8da5714/output.pkl Binary files differnew file mode 100644 index 0000000..96f2636 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b36a7dbb9cfa35e21029e010b8da5714/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3ac4a0d459dac18665b830574d853a4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3ac4a0d459dac18665b830574d853a4/metadata.json new file mode 100644 index 0000000..f11e1d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3ac4a0d459dac18665b830574d853a4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7299365997314453, "input_args": {"instruction": "\"Context: Disease primary angle-closure glaucoma associates Gene EPDR1. Variant rs1258267 associates Disease primary angle-closure glaucoma. Variant rs3816415 associates Disease primary angle-closure glaucoma. Disease primary angle-closure glaucoma associates Gene GLIS3. Disease primary angle-closure glaucoma associates Gene COL11A1. Disease primary open angle glaucoma associates Gene OPTN. Disease primary open angle glaucoma localizes Anatomy retina blood vessel. Disease primary open angle glaucoma presents Symptom Corneal Endothelial Cell Loss. Disease ontology identifier of primary open angle glaucoma is DOID:1070. Disease primary open angle glaucoma localizes Anatomy corneal endothelium. Disease primary open angle glaucoma isa Disease open-angle glaucoma. Disease primary open angle glaucoma localizes Anatomy central retinal artery. Disease primary open angle glaucoma localizes Anatomy ophthalmic artery. Disease primary open angle glaucoma localizes Anatomy orbit of skull. Disease primary open angle glaucoma presents Symptom Pupil Disorders. Disease primary open angle glaucoma localizes Anatomy cornea. Disease primary open angle glaucoma presents Symptom Vision, Low. Disease primary open angle glaucoma presents Symptom Vision Disorders. Disease primary open angle glaucoma presents Symptom Photophobia. Disease primary open angle glaucoma localizes Anatomy central retinal vein. Disease primary open angle glaucoma presents Symptom Eye Pain. Compound Prednisolone treats Disease primary open angle glaucoma. Compound 2-Aminobutanedioic acid;1-phenylpropan-2-amine contraindicates Disease angle-closure glaucoma. Disease ontology identifier of angle-closure glaucoma is DOID:13550. Disease primary angle-closure glaucoma isa Disease angle-closure glaucoma. Disease angle-closure glaucoma localizes Anatomy pigment epithelium of eye. Compound (R)-3-(1-Hydroxy-2-(methylamino)ethyl)phenol 2,3-dihydroxysuccinate contraindicates Disease angle-closure glaucoma. Compound 4-(2-Aminopropyl)phenol contraindicates Disease angle-closure glaucoma. Disease angle-closure glaucoma presents Symptom Pseudophakia. Compound Pseudoephedrine contraindicates Disease angle-closure glaucoma. Compound 1-[(4-Chlorophenyl)(phenyl)methyl]-4-[2-(2-hydroxyethoxy)ethyl]piperazinediium 4,4'-methylenebis(3-hydroxynaphthalene-2-carboxylate) contraindicates Disease angle-closure glaucoma. Disease angle-closure glaucoma localizes Anatomy central retinal artery. Disease angle-closure glaucoma localizes Anatomy retina blood vessel. Disease angle-closure glaucoma localizes Anatomy pupil. Disease angle-closure glaucoma localizes Anatomy corneal endothelium. Compound Antipyrine contraindicates Disease angle-closure glaucoma. Disease angle-closure glaucoma localizes Anatomy anterior segment of eyeball. Disease angle-closure glaucoma presents Symptom Pupil Disorders. Compound Prochlorperazine contraindicates Disease angle-closure glaucoma. Disease angle-closure glaucoma localizes Anatomy cornea. Disease angle-closure glaucoma localizes Anatomy eye. Disease angle-closure glaucoma localizes Anatomy anterior chamber of eyeball. Disease angle-closure glaucoma localizes Anatomy retina. Disease angle-closure glaucoma presents Symptom Eye Pain. Disease angle-closure glaucoma localizes Anatomy vasculature of retina. Compound Cyproheptadine contraindicates Disease angle-closure glaucoma. Disease angle-closure glaucoma localizes Anatomy ciliary body. Disease angle-closure glaucoma presents Symptom Corneal Endothelial Cell Loss. Disease retinopathy of prematurity resembles Disease angle-closure glaucoma. Disease angle-closure glaucoma resembles Disease pupil disease. Compound Oxybutynin contraindicates Disease angle-closure glaucoma. Disease angle-closure glaucoma localizes Anatomy optic disc. Variant rs1893261 associates Disease open-angle glaucoma. Variant rs200621439 associates Disease open-angle glaucoma. Variant rs553169923 associates Disease open-angle glaucoma. Variant rs191671333 associates Disease open-angle glaucoma. Variant rs59521811 associates Disease open-angle glaucoma. Variant rs113811959 associates Disease open-angle glaucoma. Variant rs1588446686 associates Disease open-angle glaucoma. Variant rs61751937 associates Disease open-angle glaucoma. Variant rs1588452749 associates Disease open-angle glaucoma. Variant rs1832971194 associates Disease open-angle glaucoma. Variant rs11969985 associates Disease open-angle glaucoma. Variant rs6969706 associates Disease open-angle glaucoma. Variant rs62521288 associates Disease open-angle glaucoma. Variant rs62521287 associates Disease open-angle glaucoma. Variant rs200148764 associates Disease open-angle glaucoma. Variant rs139006752 associates Disease open-angle glaucoma. Variant rs2580915 associates Disease open-angle glaucoma. Variant rs200114679 associates Disease open-angle glaucoma. Variant rs6947612 associates Disease open-angle glaucoma. Variant rs4361323 associates Disease open-angle glaucoma. Variant rs12566440 associates Disease open-angle glaucoma. Variant rs1588441388 associates Disease open-angle glaucoma. Variant rs200169099 associates Disease open-angle glaucoma. Variant rs17075855 associates Disease open-angle glaucoma. Variant rs886059780 associates Disease open-angle glaucoma. Variant rs886046819 associates Disease open-angle glaucoma. Variant rs34179701 associates Disease open-angle glaucoma. Variant rs886046816 associates Disease open-angle glaucoma. Variant rs34175429 associates Disease open-angle glaucoma. Variant rs886046818 associates Disease open-angle glaucoma. Disease ontology identifier of phacogenic glaucoma is DOID:12571. \\nQuestion: Out of the given list, which Gene is associated with periodontitis and primary angle-closure glaucoma. Given list is: EPDR1, TYR, IL23R, STN1, PRNP\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988475.6711326}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3ac4a0d459dac18665b830574d853a4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3ac4a0d459dac18665b830574d853a4/output.pkl Binary files differnew file mode 100644 index 0000000..7901866 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b3ac4a0d459dac18665b830574d853a4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b41e07bb80b1f0bf47ae69adbace8652/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b41e07bb80b1f0bf47ae69adbace8652/metadata.json new file mode 100644 index 0000000..39b3e17 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b41e07bb80b1f0bf47ae69adbace8652/metadata.json @@ -0,0 +1 @@ +{"duration": 0.574472188949585, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myositis and Sjogren's syndrome. Given list is: STAT4, FTO, ACOXL, MORC4, TNXB\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047778.3885298}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b41e07bb80b1f0bf47ae69adbace8652/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b41e07bb80b1f0bf47ae69adbace8652/output.pkl Binary files differnew file mode 100644 index 0000000..b90d557 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b41e07bb80b1f0bf47ae69adbace8652/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b43fb837d1e1fcc308d940470592a4b6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b43fb837d1e1fcc308d940470592a4b6/metadata.json new file mode 100644 index 0000000..c7406bc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b43fb837d1e1fcc308d940470592a4b6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5418596267700195, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with vitiligo and rheumatoid arthritis. Given list is: rs12203592, rs10103692, rs78378222, rs2476601, rs1150757'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048868.5408196}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b43fb837d1e1fcc308d940470592a4b6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b43fb837d1e1fcc308d940470592a4b6/output.pkl Binary files differnew file mode 100644 index 0000000..5a8290d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b43fb837d1e1fcc308d940470592a4b6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b451c6cf748980b3ccb92e3fbda9d63a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b451c6cf748980b3ccb92e3fbda9d63a/metadata.json new file mode 100644 index 0000000..18c1076 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b451c6cf748980b3ccb92e3fbda9d63a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4399120807647705, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myelodysplastic syndrome and psoriatic arthritis. Given list is: MST1, BTNL2, HLA-B, HERC2, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047713.6480894}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b451c6cf748980b3ccb92e3fbda9d63a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b451c6cf748980b3ccb92e3fbda9d63a/output.pkl Binary files differnew file mode 100644 index 0000000..c702660 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b451c6cf748980b3ccb92e3fbda9d63a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b47e0239a9b3fd4028cf7dee3039b3e0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b47e0239a9b3fd4028cf7dee3039b3e0/metadata.json new file mode 100644 index 0000000..9581d0e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b47e0239a9b3fd4028cf7dee3039b3e0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5049502849578857, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and marginal zone lymphoma. Given list is: HLA-DPA1, VAV3, KALRN, IL12RB2, WNT10A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048306.948574}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b47e0239a9b3fd4028cf7dee3039b3e0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b47e0239a9b3fd4028cf7dee3039b3e0/output.pkl Binary files differnew file mode 100644 index 0000000..77281bd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b47e0239a9b3fd4028cf7dee3039b3e0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b4e3fd61e3ffb737d199ac02d6faa07f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b4e3fd61e3ffb737d199ac02d6faa07f/metadata.json new file mode 100644 index 0000000..983f694 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b4e3fd61e3ffb737d199ac02d6faa07f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6427795886993408, "input_args": {"instruction": "\"Context: Variant rs4263839 associates Disease Crohn's disease. Variant rs2266959 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Disease Crohn's disease associates Gene ZNF831. Variant rs184950714 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs13333062 associates Disease Crohn's disease. Variant rs11175593 associates Disease Crohn's disease. Variant rs2823286 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs1842076 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL18RAP. Disease Crohn's disease associates Gene SLC22A23. Variant rs3851228 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs11681525 associates Disease Crohn's disease. Variant rs1819658 associates Disease Crohn's disease. Variant rs13300218 associates Disease Crohn's disease. Variant rs2836878 associates Disease Crohn's disease. Variant rs113973829 associates Disease Crohn's disease. Variant rs2227551 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs13204048 associates Disease Crohn's disease. Variant rs9286879 associates Disease Crohn's disease. Variant rs4266763 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs13361189 associates Disease Crohn's disease. Disease Crohn's disease associates Gene JAZF1. Disease Crohn's disease associates Gene ADCY3. Variant rs10188217 associates Disease Crohn's disease. Variant rs2062305 associates Disease Crohn's disease. Variant rs13428812 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs148319899 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL18R1. Variant rs212388 associates Disease Crohn's disease. Variant rs140068907 associates Disease Crohn's disease. Variant rs6651252 associates Disease Crohn's disease. Variant rs1432296 associates Disease Crohn's disease. Variant rs1998598 associates Disease Crohn's disease. Variant rs78898421 associates Disease Crohn's disease. Variant rs1343151; rs12567232; rs2902440; rs11209003; rs2201841; rs1004819; rs11465804; rs6669582; rs10789230; rs11209002; rs2064689; rs11465802; rs10889677; rs11209026; rs10889676; rs9988642 associates Disease Crohn's disease. Disease Crohn's disease associates Gene HLA-DRB1. Variant rs212389 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL21. Variant rs28449958 associates Disease Crohn's disease. Variant rs2413583 associates Disease Crohn's disease. Variant rs415890 associates Disease Crohn's disease. Variant rs864745 associates Disease Crohn's disease. Variant rs12722489 associates Disease Crohn's disease. Variant rs2024092 associates Disease Crohn's disease. Variant rs13126505 associates Disease Crohn's disease. Variant rs11879191 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs151314883 associates Disease Crohn's disease. Variant rs2227564 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Variant rs116392568 associates Disease Crohn's disease. Variant rs9271060 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs9868809 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs1260326 associates Disease Crohn's disease. Variant rs11465804 associates Disease Crohn's disease. Variant rs1799964 associates Disease Crohn's disease. Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene IL1A. Disease ankylosing spondylitis associates Gene IL12B. Disease ankylosing spondylitis associates Gene IL27. Disease ankylosing spondylitis associates Gene IL1R2. Disease ankylosing spondylitis associates Gene IL1R1. Disease ankylosing spondylitis associates Gene SAA2. Disease ankylosing spondylitis associates Gene IL23R. Variant rs1801274 associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene SAA1. Disease ankylosing spondylitis associates Gene IL17A. Variant HLA-B*2702 associates Disease ankylosing spondylitis. Variant HLA-B*2705 associates Disease ankylosing spondylitis. Variant rs1250550 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL6R. Variant rs4676410 associates Disease ankylosing spondylitis. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene TNFRSF1A. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene BACH2. Variant rs8070463 associates Disease ankylosing spondylitis. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs17192932 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene FCGR2A. Variant rs148783236 associates Disease ankylosing spondylitis. Variant rs30187 associates Disease ankylosing spondylitis. Variant rs10865331 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene TYK2. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs17765610 associates Disease ankylosing spondylitis. Variant rs1128905 associates Disease ankylosing spondylitis. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Variant rs378108 associates Disease ankylosing spondylitis. Variant rs11190133 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene CARD9. Disease ankylosing spondylitis associates Gene USP8. Disease ankylosing spondylitis associates Gene CDC37. Disease ankylosing spondylitis associates Gene MEFV. Variant rs2394250 associates Disease ankylosing spondylitis. \\nQuestion: Out of the given list, which Gene is associated with Crohn's disease and ankylosing spondylitis. Given list is: YLPM1, CHEK2, ZEB2, HLA-DQA1, IL23R\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048245.9924147}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b4e3fd61e3ffb737d199ac02d6faa07f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b4e3fd61e3ffb737d199ac02d6faa07f/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b4e3fd61e3ffb737d199ac02d6faa07f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b56ad8cc7915cdd22b9a1594cc15a509/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b56ad8cc7915cdd22b9a1594cc15a509/metadata.json new file mode 100644 index 0000000..f87ee17 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b56ad8cc7915cdd22b9a1594cc15a509/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8658967018127441, "input_args": {"instruction": "'Context: Variant rs527271064 associates Disease dilated cardiomyopathy. Variant rs1169892636 associates Disease dilated cardiomyopathy. Disease dilated cardiomyopathy associates Gene MYH6. Variant rs142143310 associates Disease dilated cardiomyopathy. Variant rs1669494952 associates Disease dilated cardiomyopathy. Variant rs1413243483 associates Disease dilated cardiomyopathy. Variant rs143121072 associates Disease dilated cardiomyopathy. Variant rs1430856878 associates Disease dilated cardiomyopathy. Variant rs116054286 associates Disease dilated cardiomyopathy. Variant rs1427758049 associates Disease dilated cardiomyopathy. Variant rs144171604 associates Disease dilated cardiomyopathy. Variant rs200108545 associates Disease dilated cardiomyopathy. Disease dilated cardiomyopathy associates Gene MYH7. Variant rs587782959 associates Disease dilated cardiomyopathy. Variant rs920640841 associates Disease dilated cardiomyopathy. Variant rs142951316 associates Disease dilated cardiomyopathy. Variant rs200830807 associates Disease dilated cardiomyopathy. Variant rs141153708 associates Disease dilated cardiomyopathy. Variant rs587782952 associates Disease dilated cardiomyopathy. Variant rs368282893 associates Disease dilated cardiomyopathy. Variant rs1680249986 associates Disease dilated cardiomyopathy. Variant rs2095752062 associates Disease dilated cardiomyopathy. Variant rs575321083 associates Disease dilated cardiomyopathy. Variant rs544242322 associates Disease dilated cardiomyopathy. Variant rs974220815 associates Disease dilated cardiomyopathy. Variant rs143812960 associates Disease dilated cardiomyopathy. Variant rs923193498 associates Disease dilated cardiomyopathy. Variant rs142885240 associates Disease dilated cardiomyopathy. Variant rs1161735211 associates Disease dilated cardiomyopathy. Variant rs528059873 associates Disease dilated cardiomyopathy. Variant rs146934311 associates Disease dilated cardiomyopathy. Variant rs57520892 associates Disease dilated cardiomyopathy. Variant rs558954630 associates Disease dilated cardiomyopathy. Variant rs183950022 associates Disease dilated cardiomyopathy. Variant rs1259706318 associates Disease dilated cardiomyopathy. Variant rs368506422 associates Disease dilated cardiomyopathy. Variant rs144815863 associates Disease dilated cardiomyopathy. Variant rs56264840 associates Disease dilated cardiomyopathy. Variant rs540014314 associates Disease dilated cardiomyopathy. Variant rs548695484 associates Disease dilated cardiomyopathy. Variant rs1528182 associates Disease dilated cardiomyopathy. Variant rs368552426 associates Disease dilated cardiomyopathy. Variant rs557142042 associates Disease dilated cardiomyopathy. Variant rs143930021 associates Disease dilated cardiomyopathy. Variant rs200420897 associates Disease dilated cardiomyopathy. Variant rs369861544 associates Disease dilated cardiomyopathy. Variant rs528369909 associates Disease dilated cardiomyopathy. Variant rs548671032 associates Disease dilated cardiomyopathy. Variant rs143978652 associates Disease dilated cardiomyopathy. Variant rs62636495 associates Disease dilated cardiomyopathy. Variant rs1680725217 associates Disease dilated cardiomyopathy. Variant rs1465320800 associates Disease dilated cardiomyopathy. Variant rs146219881 associates Disease dilated cardiomyopathy. Variant rs143584663 associates Disease dilated cardiomyopathy. Variant rs374486076 associates Disease dilated cardiomyopathy. Variant rs191527230 associates Disease dilated cardiomyopathy. Variant rs28763958 associates Disease dilated cardiomyopathy. Variant rs374848954 associates Disease dilated cardiomyopathy. Variant rs869312114 associates Disease dilated cardiomyopathy. Variant rs936216558 associates Disease dilated cardiomyopathy. Variant rs606231324 associates Disease dilated cardiomyopathy. Variant rs146020545 associates Disease dilated cardiomyopathy. Variant rs56284940 associates Disease dilated cardiomyopathy. Variant rs142951505 associates Disease dilated cardiomyopathy. Variant rs528164655 associates Disease dilated cardiomyopathy. Variant rs960962542 associates Disease dilated cardiomyopathy. Variant rs199510610 associates Disease dilated cardiomyopathy. Variant rs141208906 associates Disease dilated cardiomyopathy. Variant rs368452607 associates Disease dilated cardiomyopathy. Variant rs151244052 associates Disease dilated cardiomyopathy. Variant rs1266489077 associates Disease dilated cardiomyopathy. Variant rs146471913 associates Disease dilated cardiomyopathy. Variant rs924565857 associates Disease dilated cardiomyopathy. Variant rs587782927 associates Disease dilated cardiomyopathy. Variant rs57508089 associates Disease dilated cardiomyopathy. Disease hypertrophic cardiomyopathy associates Gene HLA-B. Variant rs886051070 associates Disease hypertrophic cardiomyopathy. Variant rs886051096 associates Disease hypertrophic cardiomyopathy. Variant rs886051080 associates Disease hypertrophic cardiomyopathy. Variant rs886051076 associates Disease hypertrophic cardiomyopathy. Variant rs886051098 associates Disease hypertrophic cardiomyopathy. Variant rs886051086 associates Disease hypertrophic cardiomyopathy. Variant rs886051079 associates Disease hypertrophic cardiomyopathy. Variant rs1469786429 associates Disease hypertrophic cardiomyopathy. Variant rs886051089 associates Disease hypertrophic cardiomyopathy. Variant rs886051097 associates Disease hypertrophic cardiomyopathy. Variant rs886051099 associates Disease hypertrophic cardiomyopathy. Variant rs886051072 associates Disease hypertrophic cardiomyopathy. Variant rs886051092 associates Disease hypertrophic cardiomyopathy. Variant rs886051066 associates Disease hypertrophic cardiomyopathy. Variant rs886051069 associates Disease hypertrophic cardiomyopathy. Variant rs886051087 associates Disease hypertrophic cardiomyopathy. Variant rs886051091 associates Disease hypertrophic cardiomyopathy. Variant rs886051064 associates Disease hypertrophic cardiomyopathy. Variant rs886051095 associates Disease hypertrophic cardiomyopathy. Variant rs886051088 associates Disease hypertrophic cardiomyopathy. Variant rs886051084 associates Disease hypertrophic cardiomyopathy. Variant rs886051077 associates Disease hypertrophic cardiomyopathy. Variant rs886051075 associates Disease hypertrophic cardiomyopathy. Variant rs886051071 associates Disease hypertrophic cardiomyopathy. Variant rs886051065 associates Disease hypertrophic cardiomyopathy. Variant rs146614850 associates Disease hypertrophic cardiomyopathy. Variant rs886051081 associates Disease hypertrophic cardiomyopathy. Variant rs886051061 associates Disease hypertrophic cardiomyopathy. Variant rs886051093 associates Disease hypertrophic cardiomyopathy. Variant rs886051083 associates Disease hypertrophic cardiomyopathy. Variant rs1280352639 associates Disease hypertrophic cardiomyopathy. Variant rs146471913 associates Disease hypertrophic cardiomyopathy. Variant rs886051063 associates Disease hypertrophic cardiomyopathy. Variant rs1466998230 associates Disease hypertrophic cardiomyopathy. Variant rs11659820 associates Disease hypertrophic cardiomyopathy. Variant rs146778113 associates Disease hypertrophic cardiomyopathy. Variant rs528851283 associates Disease hypertrophic cardiomyopathy. Variant rs146474860 associates Disease hypertrophic cardiomyopathy. Variant rs886051321 associates Disease hypertrophic cardiomyopathy. Variant rs146768859 associates Disease hypertrophic cardiomyopathy. Variant rs1439599919 associates Disease hypertrophic cardiomyopathy. Variant rs886055226 associates Disease hypertrophic cardiomyopathy. Variant rs369707906 associates Disease hypertrophic cardiomyopathy. Variant rs1430666956 associates Disease hypertrophic cardiomyopathy. Variant rs368221517 associates Disease hypertrophic cardiomyopathy. Variant rs929663462 associates Disease hypertrophic cardiomyopathy. Variant rs143978652 associates Disease hypertrophic cardiomyopathy. Variant rs143922069 associates Disease hypertrophic cardiomyopathy. Variant rs369759523 associates Disease hypertrophic cardiomyopathy. Variant rs1285035538 associates Disease hypertrophic cardiomyopathy. Variant rs886054636 associates Disease hypertrophic cardiomyopathy. Variant rs146951171 associates Disease hypertrophic cardiomyopathy. Variant rs1265248322 associates Disease hypertrophic cardiomyopathy. Variant rs369293885 associates Disease hypertrophic cardiomyopathy. Variant rs1240750957 associates Disease hypertrophic cardiomyopathy. Variant rs1466322212 associates Disease hypertrophic cardiomyopathy. Variant rs958169569 associates Disease hypertrophic cardiomyopathy. Variant rs1665886801 associates Disease hypertrophic cardiomyopathy. Variant rs864309612 associates Disease hypertrophic cardiomyopathy. Variant rs886058918 associates Disease hypertrophic cardiomyopathy. Variant rs917063084 associates Disease hypertrophic cardiomyopathy. Variant rs17851524 associates Disease hypertrophic cardiomyopathy. Variant rs886039090 associates Disease hypertrophic cardiomyopathy. Variant rs878853954 associates Disease hypertrophic cardiomyopathy. Variant rs886050419 associates Disease hypertrophic cardiomyopathy. Variant rs1278436075 associates Disease hypertrophic cardiomyopathy. Variant rs2078661310 associates Disease hypertrophic cardiomyopathy. Variant rs886050416 associates Disease hypertrophic cardiomyopathy. Variant rs192883939 associates Disease hypertrophic cardiomyopathy. Variant rs878853956 associates Disease hypertrophic cardiomyopathy. Variant rs529784690 associates Disease hypertrophic cardiomyopathy. Variant rs886048369 associates Disease hypertrophic cardiomyopathy. Variant rs1238699518 associates Disease hypertrophic cardiomyopathy. Variant rs2079392310 associates Disease hypertrophic cardiomyopathy. \\nQuestion: Out of the given list, which Gene is associated with dilated cardiomyopathy and hypertrophic cardiomyopathy. Given list is: TLR1, IL23R, HLA-B, MYH7, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048133.1114535}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b56ad8cc7915cdd22b9a1594cc15a509/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b56ad8cc7915cdd22b9a1594cc15a509/output.pkl Binary files differnew file mode 100644 index 0000000..c6eda8b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b56ad8cc7915cdd22b9a1594cc15a509/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5aa51c8502bed714ae471c96e028829/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5aa51c8502bed714ae471c96e028829/metadata.json new file mode 100644 index 0000000..573e610 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5aa51c8502bed714ae471c96e028829/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6483664512634277, "input_args": {"instruction": "'Context: Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene PPP1R10. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-F. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-C. Variant rs12191877 associates Disease psoriatic arthritis.. Disease psoriatic arthritis associates Gene IL13. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL12B. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs149997688 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene STAT2. Gene MIR424 associates Disease psoriatic arthritis. Variant rs458017 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Variant rs12188300 associates Disease psoriatic arthritis. Variant rs1610601 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TRAF3IP2. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MRPS18B. Variant rs13191343 associates Disease psoriatic arthritis. Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene TNFAIP8. Disease allergic rhinitis associates Gene TNFSF4. Disease allergic rhinitis associates Gene TNFRSF8. Disease allergic rhinitis associates Gene TNFRSF11A. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene PTPRK. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene HLA-DQB1. Disease allergic rhinitis associates Gene INPP5D. Variant rs138050288 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL2RA. Disease allergic rhinitis associates Gene TLR1. Variant rs148505069 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1RL1. Variant rs34004019 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Variant rs5743604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene LPP. Disease allergic rhinitis associates Gene NFKB1. Variant rs9272545 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Variant rs6738825 associates Disease allergic rhinitis. Variant rs61839660 associates Disease allergic rhinitis. Variant rs9687749 associates Disease allergic rhinitis. Variant rs6479828 associates Disease allergic rhinitis. Variant rs16858573 associates Disease allergic rhinitis. Variant rs12365699 associates Disease allergic rhinitis. Variant rs28690449 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Variant rs113048054 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs12887759 associates Disease allergic rhinitis. Variant rs9271701 associates Disease allergic rhinitis. Variant rs891058 associates Disease allergic rhinitis. Variant rs17294280 associates Disease allergic rhinitis. Variant rs12623041 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Variant rs61977073 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL6R. Variant rs11169225 associates Disease allergic rhinitis. Variant rs4845604 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL13. Variant rs9276796 associates Disease allergic rhinitis. Variant rs9442514 associates Disease allergic rhinitis. Variant rs1140310 associates Disease allergic rhinitis. Variant rs12784963 associates Disease allergic rhinitis. Variant rs9290877 associates Disease allergic rhinitis. Variant rs13405815 associates Disease allergic rhinitis. Variant rs63406760 associates Disease allergic rhinitis. Variant rs1438673 associates Disease allergic rhinitis.. Variant rs9297768 associates Disease allergic rhinitis. Variant rs2164068 associates Disease allergic rhinitis. Variant rs61907713 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1B. Variant rs12886625 associates Disease allergic rhinitis. Variant rs8086340 associates Disease allergic rhinitis. Variant rs17033015 associates Disease allergic rhinitis. Variant rs4381563 associates Disease allergic rhinitis. Variant rs13166760 associates Disease allergic rhinitis. Variant rs144829310 associates Disease allergic rhinitis. Variant rs34290285 associates Disease allergic rhinitis. Variant rs12952581 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Variant rs45599938 associates Disease allergic rhinitis. Variant rs6986151 associates Disease allergic rhinitis. \\nQuestion: Out of the given list, which Gene is associated with psoriatic arthritis and allergic rhinitis. Given list is: RP1, STAT4, C5AR1, TENM2, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048752.3326428}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5aa51c8502bed714ae471c96e028829/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5aa51c8502bed714ae471c96e028829/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5aa51c8502bed714ae471c96e028829/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5d10d333b58067b54e32cf623ad67a7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5d10d333b58067b54e32cf623ad67a7/metadata.json new file mode 100644 index 0000000..d930079 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5d10d333b58067b54e32cf623ad67a7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5833132266998291, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myositis and systemic scleroderma. Given list is: BTNL2, DMRT1, STAT4, CLPTM1L, SLC2A9'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047776.677755}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5d10d333b58067b54e32cf623ad67a7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5d10d333b58067b54e32cf623ad67a7/output.pkl Binary files differnew file mode 100644 index 0000000..4f2c0b6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b5d10d333b58067b54e32cf623ad67a7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b62c8e1d671c92e5ba050bf98263397e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b62c8e1d671c92e5ba050bf98263397e/metadata.json new file mode 100644 index 0000000..7cc029e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b62c8e1d671c92e5ba050bf98263397e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6652028560638428, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with hepatitis B and lymphoma. Given list is: KALRN, HLA-DQB2, ALDH1A2, STAT4, FBN1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989594.6362872}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b62c8e1d671c92e5ba050bf98263397e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b62c8e1d671c92e5ba050bf98263397e/output.pkl Binary files differnew file mode 100644 index 0000000..6249d6b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b62c8e1d671c92e5ba050bf98263397e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b670a6222ecb8474a6072d0f23ea9283/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b670a6222ecb8474a6072d0f23ea9283/metadata.json new file mode 100644 index 0000000..1ac9f82 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b670a6222ecb8474a6072d0f23ea9283/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6363251209259033, "input_args": {"instruction": "'Context: Disease non-alcoholic steatohepatitis associates Gene PNPLA3. Variant rs12077210 associates Disease non-alcoholic steatohepatitis.. Disease liver cirrhosis associates Gene SLC6A14. Disease liver cirrhosis associates Gene PNPLA6. Disease liver cirrhosis associates Gene CYP7B1. Disease liver cirrhosis associates Gene SLC7A7. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene PNPLA3. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene SLC25A13. Variant chr9:5073770 associates Disease liver cirrhosis. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene SLC11A1. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene OFD1. Variant rs58542926 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC40A1. Disease liver cirrhosis associates Gene TNFSF15. Variant rs12484700 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC51B. Variant rs2896019 associates Disease liver cirrhosis. Variant rs551625260 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC51A. Disease liver cirrhosis associates Gene PHKA2. Disease liver cirrhosis associates Gene CFAP418. Variant rs3819290 associates Disease liver cirrhosis. Variant rs78069066 associates Disease liver cirrhosis. Variant rs3129943 associates Disease liver cirrhosis. Variant rs28929474 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene CTNNB1. Disease liver cirrhosis associates Gene ABCB11. Disease liver cirrhosis associates Gene PHKG2. Disease liver cirrhosis associates Gene SLC30A10. Disease liver cirrhosis associates Gene HAMP. Disease liver cirrhosis associates Gene NHP2. Disease liver cirrhosis associates Gene LIPA. Disease liver cirrhosis associates Gene MUC5B. Disease liver cirrhosis associates Gene FECH. Gene MIR513A2 associates Disease liver cirrhosis. Gene MIR196A2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene WDR19. Variant rs6834314 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ANKS6. Disease liver cirrhosis associates Gene ABHD5. Disease liver cirrhosis associates Gene ATP8B1. Disease liver cirrhosis associates Gene ABCB4. Disease liver cirrhosis associates Gene TCF4. Disease liver cirrhosis associates Gene PPARG. Disease liver cirrhosis associates Gene HFE. Gene MIR513A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene KIF12. Disease liver cirrhosis associates Gene DHCR7. Disease liver cirrhosis associates Gene ALG9. Disease liver cirrhosis associates Gene APOE. Gene MIR571 associates Disease liver cirrhosis. Variant rs2642438 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene B9D2. Disease liver cirrhosis associates Gene POU2AF1. Disease liver cirrhosis associates Gene FOS. Disease liver cirrhosis associates Gene B9D1. Disease liver cirrhosis associates Gene HSD3B7. Disease liver cirrhosis associates Gene INPP5E. Disease liver cirrhosis associates Gene JAG1. Disease liver cirrhosis associates Gene TGFB1. Gene MIR873 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene KRT18. Disease liver cirrhosis associates Gene ASS1. Disease liver cirrhosis associates Gene ALDOB. Disease liver cirrhosis associates Gene FAH. Gene MIR29B1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene STN1. Disease liver cirrhosis associates Gene HDAC9. \\nQuestion: Out of the given list, which Gene is associated with non-alcoholic steatohepatitis and liver cirrhosis. Given list is: PNPLA3, SULT1B1, KIT, AHR, FAM227B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990065.1454003}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b670a6222ecb8474a6072d0f23ea9283/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b670a6222ecb8474a6072d0f23ea9283/output.pkl Binary files differnew file mode 100644 index 0000000..f32c41b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b670a6222ecb8474a6072d0f23ea9283/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b68bd2bad8782a8482cda406398833f4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b68bd2bad8782a8482cda406398833f4/metadata.json new file mode 100644 index 0000000..86474bc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b68bd2bad8782a8482cda406398833f4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.621859073638916, "input_args": {"instruction": "'Context: Disease diffuse large B-cell lymphoma associates Gene HLA-B. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR33A associates Disease diffuse large B-cell lymphoma. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene IL10. Variant rs537841689 associates Disease herpes zoster.. Variant rs142765674 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene LRRC32. Variant rs541558502 associates Disease herpes zoster. Disease herpes zoster associates Gene POLR3A. Variant rs117171752 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Variant rs147482218 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT1. Variant rs765885335 associates Disease herpes zoster. Variant rs75640364 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene TMC7. Disease herpes zoster associates Gene STAT3. Variant rs9810195 associates Disease herpes zoster. Disease herpes zoster presents Symptom Oral Manifestations. Disease ontology identifier of herpes zoster is DOID:8536. Disease amyotrophic neuralgia resembles Disease herpes zoster. Disease polyradiculopathy resembles Disease herpes zoster. Disease facial nerve disease resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy spinal nerve. Disease herpes zoster localizes Anatomy skin of body. Disease herpes zoster localizes Anatomy spinal cord. Disease peroneal neuropathy resembles Disease herpes zoster. Compound Mycophenolic acid contraindicates Disease herpes zoster. Disease facial dermatosis resembles Disease herpes zoster. Disease herpes simplex virus keratitis resembles Disease herpes zoster. Disease keratitis resembles Disease herpes zoster. Disease herpes zoster isa Disease nervous system disease. Disease herpes zoster localizes Anatomy spinal nucleus of trigeminal nerve. Disease herpes zoster presents Symptom Hyperesthesia. Disease herpes zoster localizes Anatomy cornea. Compound Tacrolimus contraindicates Disease herpes zoster. Disease herpes zoster localizes Anatomy central nervous system. Disease glossopharyngeal motor neuropathy resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy facial nerve. \\nQuestion: Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and herpes zoster. Given list is: SNCA, CDKAL1, HLA-DQA1, HLA-B, RBFOX1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048304.7370448}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b68bd2bad8782a8482cda406398833f4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b68bd2bad8782a8482cda406398833f4/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b68bd2bad8782a8482cda406398833f4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b6d0a0f82b7a03ad3a425f70202698ab/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b6d0a0f82b7a03ad3a425f70202698ab/metadata.json new file mode 100644 index 0000000..d2642b6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b6d0a0f82b7a03ad3a425f70202698ab/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4485056400299072, "input_args": {"instruction": "'Context: Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-DQA2. Disease cervix carcinoma associates Gene HLA-G. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ACACB. Variant rs59661306 associates Disease cervix carcinoma. Variant HAL-DRB1*13 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene EXOC1. Disease cervix carcinoma associates Gene INS-IGF2. Variant rs57079996 associates Disease cervix carcinoma. Variant rs9272143 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Variant rs28752857 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs75393409 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Variant rs3132461 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs116149201 associates Disease cervix carcinoma. Variant rs7457728 associates Disease cervix carcinoma. Gene MIR361 associates Disease cervix carcinoma. Gene MIR381 associates Disease cervix carcinoma. Gene MIR4262 associates Disease cervix carcinoma. Variant rs115137622 associates Disease cervix carcinoma. Variant rs73730372 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene TUBB. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant rs6809477 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with cervix carcinoma and autoimmune hepatitis. Given list is: CHST11, FAT3, IL6, ERAP1, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048182.1918728}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b6d0a0f82b7a03ad3a425f70202698ab/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b6d0a0f82b7a03ad3a425f70202698ab/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b6d0a0f82b7a03ad3a425f70202698ab/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b735e345654b2524c2e57efb2f2ba678/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b735e345654b2524c2e57efb2f2ba678/metadata.json new file mode 100644 index 0000000..33bde3c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b735e345654b2524c2e57efb2f2ba678/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5144526958465576, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and idiopathic pulmonary fibrosis. Given list is: FBN1, TERT, DLEU7, IL2RA, PTK2B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047830.5426748}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b735e345654b2524c2e57efb2f2ba678/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b735e345654b2524c2e57efb2f2ba678/output.pkl Binary files differnew file mode 100644 index 0000000..b109a0c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b735e345654b2524c2e57efb2f2ba678/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b8455e568f74412113464461ab6aee18/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b8455e568f74412113464461ab6aee18/metadata.json new file mode 100644 index 0000000..a88bfaa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b8455e568f74412113464461ab6aee18/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5753962993621826, "input_args": {"instruction": "'Context: Disease herpes zoster associates Gene HLA-A. Disease herpes zoster associates Gene HLA-B. Variant rs142765674 associates Disease herpes zoster. Variant rs537841689 associates Disease herpes zoster.. Variant rs541558502 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT1. Disease herpes zoster associates Gene IL10. Disease herpes zoster associates Gene STAT3. Variant rs9810195 associates Disease herpes zoster. Variant rs147482218 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Variant rs765885335 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Variant rs117171752 associates Disease herpes zoster. Variant rs75640364 associates Disease herpes zoster. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene POLR3C. Disease herpes zoster associates Gene POLR3A. Disease herpes zoster associates Gene LRRC32. Disease herpes zoster associates Gene TMC7. Disease herpes zoster presents Symptom Hyperesthesia. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster presents Symptom Facial Pain. Disease herpes zoster presents Symptom Paresis. Disease peroneal neuropathy resembles Disease herpes zoster. Compound Mycophenolic acid contraindicates Disease herpes zoster. Disease polyradiculopathy resembles Disease herpes zoster. Disease facial dermatosis resembles Disease herpes zoster. Disease keratitis resembles Disease herpes zoster. Disease herpes zoster presents Symptom Acute Pain. Disease herpes zoster localizes Anatomy skin of body. Disease granulomatous angiitis resembles Disease herpes zoster. Disease herpes simplex virus keratitis resembles Disease herpes zoster. Disease herpes zoster presents Symptom Toothache. Disease herpes zoster presents Symptom Sciatica. Compound Mycophenolate mofetil contraindicates Disease herpes zoster. Disease Guillain-Barre syndrome resembles Disease herpes zoster. Disease herpes zoster localizes Anatomy shoulder. Disease colonic pseudo-obstruction resembles Disease herpes zoster. Disease facial nerve disease resembles Disease herpes zoster. Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-DRB1. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene HLA-C. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Gene MIR15A associates Disease psoriatic arthritis. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Variant rs149997688 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL12B. Disease psoriatic arthritis associates Gene TYK2. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Gene MIR146A associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL13. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs13199524 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene MUC22. Variant rs13190932 associates Disease psoriatic arthritis. Gene MIR424 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene POU5F1. Variant rs116340302 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene C1orf141. Disease psoriatic arthritis associates Gene SLC22A5. Variant rs115645848 associates Disease psoriatic arthritis. Variant rs76956521 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs458017 associates Disease psoriatic arthritis. \\nQuestion: Out of the given list, which Gene is associated with herpes zoster and psoriatic arthritis. Given list is: HLA-B, ADGRV1, CPS1, SULT1B1, ATG5'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047766.6965876}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b8455e568f74412113464461ab6aee18/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b8455e568f74412113464461ab6aee18/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b8455e568f74412113464461ab6aee18/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b90a9ce18ad3a3bb903a89a582444bbf/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b90a9ce18ad3a3bb903a89a582444bbf/metadata.json new file mode 100644 index 0000000..cffd0c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b90a9ce18ad3a3bb903a89a582444bbf/metadata.json @@ -0,0 +1 @@ +{"duration": 0.594750165939331, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and interstitial lung disease. Given list is: ADGRG6, FGFR2, AFAP1, TERT, YLPM1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989507.1399066}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b90a9ce18ad3a3bb903a89a582444bbf/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b90a9ce18ad3a3bb903a89a582444bbf/output.pkl Binary files differnew file mode 100644 index 0000000..8618155 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/b90a9ce18ad3a3bb903a89a582444bbf/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ba2ede7f9dc9fe8a72b4a0811f716737/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ba2ede7f9dc9fe8a72b4a0811f716737/metadata.json new file mode 100644 index 0000000..8c97f6d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ba2ede7f9dc9fe8a72b4a0811f716737/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46198391914367676, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with malaria and pancreatic carcinoma. Given list is: ABO, HLA-DPA1, TNRC6B, JAK2, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988482.7727551}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ba2ede7f9dc9fe8a72b4a0811f716737/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ba2ede7f9dc9fe8a72b4a0811f716737/output.pkl Binary files differnew file mode 100644 index 0000000..b07f4b5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ba2ede7f9dc9fe8a72b4a0811f716737/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/baffe0f4eb085dee2f70fc167d9b0dd7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/baffe0f4eb085dee2f70fc167d9b0dd7/metadata.json new file mode 100644 index 0000000..f001cc8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/baffe0f4eb085dee2f70fc167d9b0dd7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6074943542480469, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with lung adenocarcinoma and central nervous system cancer. Given list is: rs10490924, rs10830962, rs2736100, rs2391769, rs9272143'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049044.9173214}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/baffe0f4eb085dee2f70fc167d9b0dd7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/baffe0f4eb085dee2f70fc167d9b0dd7/output.pkl Binary files differnew file mode 100644 index 0000000..a8e3000 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/baffe0f4eb085dee2f70fc167d9b0dd7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb05e853282000cfd8b1f6e35f7b7ca3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb05e853282000cfd8b1f6e35f7b7ca3/metadata.json new file mode 100644 index 0000000..35db899 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb05e853282000cfd8b1f6e35f7b7ca3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5605313777923584, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and psoriasis. Given list is: ERAP1, CLPTM1L, ADGRG6, HLA-B, MST1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048298.259412}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb05e853282000cfd8b1f6e35f7b7ca3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb05e853282000cfd8b1f6e35f7b7ca3/output.pkl Binary files differnew file mode 100644 index 0000000..82b5f89 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb05e853282000cfd8b1f6e35f7b7ca3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb54e8078aae8d069797875d11ddac74/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb54e8078aae8d069797875d11ddac74/metadata.json new file mode 100644 index 0000000..e226306 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb54e8078aae8d069797875d11ddac74/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46778059005737305, "input_args": {"instruction": "'Context: Disease liver cirrhosis associates Gene SLC6A14. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene SLC11A1. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene PNPLA6. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene SLC7A7. Variant chr9:5073770 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CYP7B1. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene PNPLA3. Disease liver cirrhosis associates Gene SLC51B. Disease liver cirrhosis associates Gene CTNNB1. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene APOE. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene SLC40A1. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene CLDN1. Disease liver cirrhosis associates Gene CFAP418. Disease liver cirrhosis associates Gene SLC51A. Disease liver cirrhosis associates Gene STX1A. Disease liver cirrhosis associates Gene SLC30A10. Disease liver cirrhosis associates Gene HBB. Disease liver cirrhosis associates Gene HSD3B7. Disease liver cirrhosis associates Gene NHP2. Disease liver cirrhosis associates Gene ABHD5. Disease liver cirrhosis associates Gene HAMP. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene CLCA4. Disease liver cirrhosis associates Gene ABCB4. Disease liver cirrhosis associates Gene ABCB11. Variant rs78069066 associates Disease liver cirrhosis. Variant rs200663261 associates Disease liver cirrhosis. Variant rs2896019 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene MUC5B. Disease liver cirrhosis associates Gene PIK3CA. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene PHKA2. Disease liver cirrhosis associates Gene ACVRL1. Disease liver cirrhosis associates Gene GBA1. Disease liver cirrhosis associates Gene ASAH1. Disease liver cirrhosis associates Gene JAG1. Disease liver cirrhosis associates Gene B9D1. Disease liver cirrhosis associates Gene KIF3B. Disease liver cirrhosis associates Gene SDCCAG8. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene ANKS6. Disease liver cirrhosis associates Gene SMPD1. Variant rs3819290 associates Disease liver cirrhosis. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene KCNN4. Disease liver cirrhosis associates Gene KIF12. Disease liver cirrhosis associates Gene TCF4. Disease liver cirrhosis associates Gene HDAC9. Variant rs58542926 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene GALT. Disease liver cirrhosis associates Gene PHKG2. Disease liver cirrhosis associates Gene B9D2. Disease liver cirrhosis associates Gene TGFB1. Variant rs12484700 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ASS1. Disease liver cirrhosis associates Gene ALDOB. Disease liver cirrhosis associates Gene POU2AF1. Disease liver cirrhosis associates Gene KRT18. Disease liver cirrhosis associates Gene NOTCH1. Disease liver cirrhosis associates Gene GLIS3. Disease liver cirrhosis associates Gene ABCD3. Disease liver cirrhosis associates Gene HFE. Disease liver cirrhosis associates Gene CEACAM6. Variant rs28929474 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene FECH. Disease liver cirrhosis associates Gene ATP8B1. Disease liver cirrhosis associates Gene ENG. Disease liver cirrhosis associates Gene AXIN1. Disease non-alcoholic steatohepatitis associates Gene PNPLA3. Variant rs2896019 associates Disease non-alcoholic steatohepatitis. \\nQuestion: Out of the given list, which Gene is associated with liver cirrhosis and non-alcoholic steatohepatitis. Given list is: SCN1A, EYA2, CACNA2D1, HBB, PNPLA3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989711.8585463}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb54e8078aae8d069797875d11ddac74/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb54e8078aae8d069797875d11ddac74/output.pkl Binary files differnew file mode 100644 index 0000000..f32c41b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb54e8078aae8d069797875d11ddac74/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb69a4b787bf7bfa729afea04b6392ca/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb69a4b787bf7bfa729afea04b6392ca/metadata.json new file mode 100644 index 0000000..ae9f798 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb69a4b787bf7bfa729afea04b6392ca/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7076780796051025, "input_args": {"instruction": "'Context: Variant rs9277535 associates Disease hepatitis B. Disease hepatitis B associates Gene HLA-DQB2. Variant rs11866328 associates Disease hepatitis B. Gene MIR6126 associates Disease hepatitis B. Variant rs2856718 associates Disease hepatitis B. Disease hepatitis B associates Gene TCF19. Variant rs4821116 associates Disease hepatitis B. Gene MIR520B associates Disease hepatitis B. Gene MIR520A associates Disease hepatitis B. Gene MIR26A1 associates Disease hepatitis B. Gene MIR26B associates Disease hepatitis B. Gene MIR583 associates Disease hepatitis B. Variant rs3130542 associates Disease hepatitis B. Variant rs1419881 associates Disease hepatitis B. Gene MIR574 associates Disease hepatitis B. Gene MIR425 associates Disease hepatitis B. Disease hepatitis B associates Gene HLA-DPB1. Gene MIR106A associates Disease hepatitis B. Gene MIR106B associates Disease hepatitis B. Gene MIR501 associates Disease hepatitis B. Gene MIR4717 associates Disease hepatitis B. Gene MIR602 associates Disease hepatitis B. Variant rs652888 associates Disease hepatitis B. Gene MIR1-2 associates Disease hepatitis B. Gene MIR101-2 associates Disease hepatitis B. Gene MIR101-1 associates Disease hepatitis B. Gene MIR1-1 associates Disease hepatitis B. Variant rs7453920 associates Disease hepatitis B.. Gene MIR125A associates Disease hepatitis B. Gene MIR1275 associates Disease hepatitis B. Gene MIR122 associates Disease hepatitis B. Disease lymphoma associates Gene HLA-DQB1. Disease lymphoma associates Gene HLA-DQA1. Disease lymphoma associates Gene KRT14. Disease lymphoma associates Gene HAVCR2. Disease lymphoma associates Gene TNFRSF13B. Disease lymphoma associates Gene HLA-DRB1. Disease lymphoma associates Gene IRF2BP2. Disease lymphoma associates Gene RAD54B. Variant rs9268853 associates Disease lymphoma. Disease lymphoma associates Gene KRT5. Disease lymphoma associates Gene KRT1. Disease lymphoma associates Gene TNFRSF1B. Variant rs864622253 associates Disease lymphoma. Variant rs12289961 associates Disease lymphoma. Disease lymphoma associates Gene NFKB2. Disease lymphoma associates Gene TNFSF12. Disease lymphoma associates Gene TNFRSF13C. Disease lymphoma associates Gene NFKB1. Disease lymphoma associates Gene COL14A1. Variant rs115957064 associates Disease lymphoma. Disease lymphoma associates Gene IL2RG. Variant rs11540652 associates Disease lymphoma. Disease lymphoma associates Gene FAS. Variant rs2621416 associates Disease lymphoma. Variant rs267601394 associates Disease lymphoma. Variant rs267601395 associates Disease lymphoma. Variant rs143700307 associates Disease lymphoma. Variant rs915103621 associates Disease lymphoma. Variant rs6773854 associates Disease lymphoma. Variant rs121918459 associates Disease lymphoma. Variant rs13255292 associates Disease lymphoma. Variant rs1574404027 associates Disease lymphoma. Disease lymphoma associates Gene USB1. Disease lymphoma associates Gene KRAS. Disease lymphoma associates Gene KIF11. Variant rs1057519833 associates Disease lymphoma. Disease lymphoma associates Gene TCF4. Gene MIR664B associates Disease lymphoma. Disease lymphoma associates Gene RAD54L. Disease lymphoma associates Gene SAA2. Disease lymphoma associates Gene DEF6. Gene MIR363 associates Disease lymphoma. Disease lymphoma associates Gene MSH6. Gene MIR466 associates Disease lymphoma. Variant rs4713570 associates Disease lymphoma. Gene MIR26A2 associates Disease lymphoma. Disease lymphoma associates Gene SAA1. Gene MIR26A1 associates Disease lymphoma. Variant rs772470710 associates Disease lymphoma. Disease lymphoma associates Gene KLHDC8B. Variant rs387907272 associates Disease lymphoma. Disease lymphoma associates Gene FASLG. Variant rs1599367044 associates Disease lymphoma. Disease lymphoma associates Gene XRCC4. Variant rs117972357 associates Disease lymphoma. Disease lymphoma associates Gene CD81. Gene MIR24-1 associates Disease lymphoma. Variant rs2647045 associates Disease lymphoma. Disease lymphoma associates Gene CHEK2. Gene MIR629 associates Disease lymphoma. Gene MIR10B associates Disease lymphoma. Gene MIR19B2 associates Disease lymphoma. Disease lymphoma associates Gene RB1. Gene MIR126 associates Disease lymphoma. Gene MIR708 associates Disease lymphoma. Gene MIR92A1 associates Disease lymphoma. Disease lymphoma associates Gene CXCR4. Disease lymphoma associates Gene ITK. Disease lymphoma associates Gene IGH. Gene MIR19B1 associates Disease lymphoma. Variant rs1592119138 associates Disease lymphoma. Gene MIR92A2 associates Disease lymphoma. Disease lymphoma associates Gene RAG2. Disease lymphoma associates Gene FCHO1. Disease lymphoma associates Gene B2M. \\nQuestion: Out of the given list, which Gene is associated with hepatitis B and lymphoma. Given list is: KALRN, HLA-DQB2, ALDH1A2, STAT4, FBN1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989595.8666253}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb69a4b787bf7bfa729afea04b6392ca/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb69a4b787bf7bfa729afea04b6392ca/output.pkl Binary files differnew file mode 100644 index 0000000..038d166 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb69a4b787bf7bfa729afea04b6392ca/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb8633e209a5368322b3e5b003422c5d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb8633e209a5368322b3e5b003422c5d/metadata.json new file mode 100644 index 0000000..729925d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb8633e209a5368322b3e5b003422c5d/metadata.json @@ -0,0 +1 @@ +{"duration": 2.109074831008911, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with atrophic gastritis and duodenal ulcer. Given list is: HOXD3, ATP2B1, PSCA, CDK8, CACNA1A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047883.289226}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb8633e209a5368322b3e5b003422c5d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb8633e209a5368322b3e5b003422c5d/output.pkl Binary files differnew file mode 100644 index 0000000..d243dad --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bb8633e209a5368322b3e5b003422c5d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bbe64c444556089d431be4c1b0fddd5d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bbe64c444556089d431be4c1b0fddd5d/metadata.json new file mode 100644 index 0000000..ffd7606 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bbe64c444556089d431be4c1b0fddd5d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5546319484710693, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and estrogen-receptor negative breast cancer. Given list is: SAMD9L, BTNL2, TERT, TERT, STAT4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048805.4592285}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bbe64c444556089d431be4c1b0fddd5d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bbe64c444556089d431be4c1b0fddd5d/output.pkl Binary files differnew file mode 100644 index 0000000..63dc361 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bbe64c444556089d431be4c1b0fddd5d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bc24e528f0627df192d8bcf52cfddf2a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bc24e528f0627df192d8bcf52cfddf2a/metadata.json new file mode 100644 index 0000000..719a2d0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bc24e528f0627df192d8bcf52cfddf2a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.49999260902404785, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with non-alcoholic steatohepatitis and non-alcoholic fatty liver disease. Given list is: HLA-DQB2, ZFPM2, KALRN, PNPLA3, DENND1A'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990062.4753747}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bc24e528f0627df192d8bcf52cfddf2a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bc24e528f0627df192d8bcf52cfddf2a/output.pkl Binary files differnew file mode 100644 index 0000000..885b04d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bc24e528f0627df192d8bcf52cfddf2a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd1b759cec5e41cdd8fcfc3e71ab0534/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd1b759cec5e41cdd8fcfc3e71ab0534/metadata.json new file mode 100644 index 0000000..064d58d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd1b759cec5e41cdd8fcfc3e71ab0534/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5884833335876465, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Kuhnt-Junius degeneration and kidney disease. Given list is: PRKACB, MUC5B, TERT, CFH, CACNA2D1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990005.4216115}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd1b759cec5e41cdd8fcfc3e71ab0534/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd1b759cec5e41cdd8fcfc3e71ab0534/output.pkl Binary files differnew file mode 100644 index 0000000..93cffd1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd1b759cec5e41cdd8fcfc3e71ab0534/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd4b5896ae32fcb704e7580f46749e1e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd4b5896ae32fcb704e7580f46749e1e/metadata.json new file mode 100644 index 0000000..158ce1c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd4b5896ae32fcb704e7580f46749e1e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5160768032073975, "input_args": {"instruction": "'Context: Disease oropharynx cancer associates Gene HLA-DQB1. Disease oropharynx cancer associates Gene ADH1B.. Variant rs189602139 associates Disease oropharynx cancer. Variant rs35189640 associates Disease oropharynx cancer. Variant rs2523679 associates Disease oropharynx cancer. Disease autoimmune hepatitis associates Gene HLA-DQB1. Disease autoimmune hepatitis associates Gene HLA-DQA1. Variant rs56036302 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. \\nQuestion: Out of the given list, which Gene is associated with oropharynx cancer and autoimmune hepatitis. Given list is: HLA-DQB1, TNXB, FBN1, C9, BTN3A1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990066.3482735}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd4b5896ae32fcb704e7580f46749e1e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd4b5896ae32fcb704e7580f46749e1e/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd4b5896ae32fcb704e7580f46749e1e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd801080cc42a415d72c5b36a423cf20/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd801080cc42a415d72c5b36a423cf20/metadata.json new file mode 100644 index 0000000..fc0ce3e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd801080cc42a415d72c5b36a423cf20/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5244503021240234, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with rheumatic heart disease and oral cavity cancer. Given list is: HLA-DQB1, IL23R, TM6SF2, BTC, SYT14'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047875.5809896}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd801080cc42a415d72c5b36a423cf20/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd801080cc42a415d72c5b36a423cf20/output.pkl Binary files differnew file mode 100644 index 0000000..91cd23f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd801080cc42a415d72c5b36a423cf20/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd9b4d8ebfe811d22f31ac05ec722cd2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd9b4d8ebfe811d22f31ac05ec722cd2/metadata.json new file mode 100644 index 0000000..481d2bc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd9b4d8ebfe811d22f31ac05ec722cd2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.496906042098999, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Crohn's disease and ulcerative colitis. Given list is: CAPN14, LPP, UMPS, RBFOX1, IL23R\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048246.495356}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd9b4d8ebfe811d22f31ac05ec722cd2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd9b4d8ebfe811d22f31ac05ec722cd2/output.pkl Binary files differnew file mode 100644 index 0000000..a1d0660 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bd9b4d8ebfe811d22f31ac05ec722cd2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be44a784585d41117453b3ca1e77fa27/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be44a784585d41117453b3ca1e77fa27/metadata.json new file mode 100644 index 0000000..5bfcab5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be44a784585d41117453b3ca1e77fa27/metadata.json @@ -0,0 +1 @@ +{"duration": 0.39363622665405273, "input_args": {"instruction": "\"Context: Disease psoriasis 13 associates Gene TRAF3IP2.. Disease psoriasis 1 associates Gene HLA-C.. Disease ontology identifier of psoriasis 4 is DOID:0111280. Disease psoriasis associates Gene HLA-B. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis. Variant rs41298997 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs13191519 x rs4349859 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs1639110 x rs4358666 associates Disease psoriasis. Variant rs1639110 x rs17206680 associates Disease psoriasis. Variant rs75851973 x rs13191519 associates Disease psoriasis. Variant rs17728338 x rs13203895 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs6929464 x rs1639110 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant rs149798287 associates Disease psoriasis. Variant rs12191877 x rs2844502 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs1639110 x rs45533135 associates Disease psoriasis. Variant rs610037 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DQB1. Variant rs62149416 associates Disease psoriasis. Variant rs12586317 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant rs8128234 associates Disease psoriasis. Variant rs12445568 associates Disease psoriasis. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs1576 x rs4358666 associates Disease psoriasis. Disease psoriasis 15 associates Gene AP1S3.. \\nQuestion: Out of the given list, which Gene is associated with psoriasis and Takayasu's arteritis. Given list is: SHTN1, HLA-B, SLC14A2, BTBD9, DTNB\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988415.8047197}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be44a784585d41117453b3ca1e77fa27/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be44a784585d41117453b3ca1e77fa27/output.pkl Binary files differnew file mode 100644 index 0000000..eaa8405 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be44a784585d41117453b3ca1e77fa27/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be6175c39fcb46d1f36cce4dad97c3b9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be6175c39fcb46d1f36cce4dad97c3b9/metadata.json new file mode 100644 index 0000000..2db0e94 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be6175c39fcb46d1f36cce4dad97c3b9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5693135261535645, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with anti-neutrophil antibody associated vasculitis and keratinocyte carcinoma\"@e. Given list is: rs2812378, rs17145188, rs12931267, rs6679677, rs12413409'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049113.097817}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be6175c39fcb46d1f36cce4dad97c3b9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be6175c39fcb46d1f36cce4dad97c3b9/output.pkl Binary files differnew file mode 100644 index 0000000..84b4458 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be6175c39fcb46d1f36cce4dad97c3b9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be816a094289f0b8f8f478f774be0c02/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be816a094289f0b8f8f478f774be0c02/metadata.json new file mode 100644 index 0000000..b35cf2e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be816a094289f0b8f8f478f774be0c02/metadata.json @@ -0,0 +1 @@ +{"duration": 1.244091272354126, "input_args": {"instruction": "'Context: Disease artery disease associates Gene APOA1. Disease artery disease associates Gene ABCA1. Disease artery disease associates Gene ATP2B1. Disease artery disease associates Gene COL3A1. Disease artery disease associates Gene LDLRAP1. Disease artery disease associates Gene APOBR. Disease artery disease associates Gene LOX. Disease artery disease associates Gene NOS3. Disease artery disease associates Gene APOB. Disease artery disease associates Gene NOS2. Disease artery disease associates Gene SELE. Disease artery disease associates Gene AGTR1. Disease artery disease associates Gene ELN.. Disease artery disease associates Gene CETP. Disease artery disease associates Gene FBN1. Disease artery disease associates Gene EIF2AK4. Variant rs10455872 associates Disease aortic valve stenosis. Variant rs7543130 associates Disease aortic valve stenosis. Variant rs174547 associates Disease aortic valve stenosis. Variant rs1830321 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene SLC2A10. Disease aortic valve stenosis associates Gene ADAMTS10. Gene MIR3663 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene ADAMTSL2. Disease aortic valve stenosis associates Gene B4GALT7. Gene MIR3138 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene ANKS6. Gene MIR636 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene ACTB. Disease aortic valve stenosis associates Gene LMNA. Gene MIR575 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene HAAO. Disease aortic valve stenosis associates Gene LTBP2. Disease aortic valve stenosis associates Gene LPA. Gene MIR630 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene AMER1. Disease aortic valve stenosis associates Gene FLI1. Disease aortic valve stenosis associates Gene CYP24A1. Disease aortic valve stenosis associates Gene FBN1. Disease aortic valve stenosis associates Gene GBA1. Gene MIR382 associates Disease aortic valve stenosis. Gene MIR718 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene VWF. Gene MIR424 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene FADS2. Disease aortic valve stenosis associates Gene NOTCH2. Gene MIR148A associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene ELN. Gene MIR146B associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene FGFR1. Disease aortic valve stenosis associates Gene NR2F2. Disease aortic valve stenosis associates Gene GLB1. Gene MIR26A2 associates Disease aortic valve stenosis. Gene MIR31 associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene TAF2. Gene MIR106A associates Disease aortic valve stenosis. Disease aortic valve stenosis associates Gene FADS1. Disease aortic valve stenosis associates Gene CLIC2. Disease aortic valve stenosis associates Gene ZMPSTE24. Disease aortic valve stenosis associates Gene DYRK1A. \\nQuestion: Out of the given list, which Variant is associated with large artery stroke and aortic stenosis. Given list is: rs10455872, rs35781323, rs4615152, rs761934676, rs11965538'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049124.8713357}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be816a094289f0b8f8f478f774be0c02/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be816a094289f0b8f8f478f774be0c02/output.pkl Binary files differnew file mode 100644 index 0000000..c42debe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/be816a094289f0b8f8f478f774be0c02/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bea4d348c21332f5dbfaa6c5578288bb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bea4d348c21332f5dbfaa6c5578288bb/metadata.json new file mode 100644 index 0000000..7466423 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bea4d348c21332f5dbfaa6c5578288bb/metadata.json @@ -0,0 +1 @@ +{"duration": 1.0089919567108154, "input_args": {"instruction": "'Context: Variant rs149934734 associates Disease uterine fibroid. Variant rs4821939 associates Disease uterine fibroid. Variant rs4821936 associates Disease uterine fibroid. Variant rs4858590 associates Disease uterine fibroid. Variant rs566396343 associates Disease uterine fibroid. Variant rs551980034 associates Disease uterine fibroid. Variant rs149787529 associates Disease uterine fibroid. Variant rs61889186 associates Disease uterine fibroid. Variant rs4975538 associates Disease uterine fibroid. Variant rs4684433 associates Disease uterine fibroid. Variant rs1604744 associates Disease uterine fibroid. Variant rs5792315 associates Disease uterine fibroid. Variant rs11637932 associates Disease uterine fibroid. Variant rs17361789 associates Disease uterine fibroid. Variant rs8105767 associates Disease uterine fibroid. Variant rs6901631 associates Disease uterine fibroid. Variant rs540409605 associates Disease uterine fibroid. Variant rs6903575 associates Disease uterine fibroid. Variant rs9548898 associates Disease uterine fibroid. Variant rs12674731 associates Disease uterine fibroid. Variant rs11031731 associates Disease uterine fibroid. Variant rs1592471112 associates Disease uterine fibroid. Variant rs55819434 associates Disease uterine fibroid. Variant rs11887109 associates Disease uterine fibroid. Variant rs12484951 associates Disease uterine fibroid. Variant rs11692588 associates Disease uterine fibroid. Variant rs35569312 associates Disease uterine fibroid. Variant rs56263516 associates Disease uterine fibroid. Variant rs17631680 associates Disease uterine fibroid. Variant rs12479436 associates Disease uterine fibroid. Variant rs199469675 associates Disease uterine fibroid. Variant rs199469678 associates Disease uterine fibroid. Variant rs12484776 associates Disease uterine fibroid. Variant rs199469681 associates Disease uterine fibroid. Variant rs11786929 associates Disease uterine fibroid. Variant rs148143917 associates Disease uterine fibroid. Variant rs141379009 associates Disease uterine fibroid. Variant rs12484438 associates Disease uterine fibroid. Variant rs199469677 associates Disease uterine fibroid. Variant rs4785384 associates Disease uterine fibroid. Variant rs62323681 associates Disease uterine fibroid. Variant rs11246003 associates Disease uterine fibroid. Variant rs34933909 associates Disease uterine fibroid. Variant rs199469685 associates Disease uterine fibroid. Variant rs17879961 associates Disease uterine fibroid. Variant rs1060499630 associates Disease uterine fibroid. Variant rs6563812 associates Disease uterine fibroid. Variant rs4402860 associates Disease uterine fibroid. Variant rs507139 associates Disease uterine fibroid. Variant rs7815798 associates Disease uterine fibroid. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs587781761 associates Disease breast cancer. Variant rs587776419 associates Disease breast cancer. Variant rs587776416 associates Disease breast cancer. Variant rs12721593 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs149769332 associates Disease breast cancer. Variant rs61747631 associates Disease breast cancer. Variant rs869312772 associates Disease breast cancer. Variant rs11571769 associates Disease breast cancer. Variant rs56121817 associates Disease breast cancer. Variant rs57936182 associates Disease breast cancer. Variant rs587781934 associates Disease breast cancer. Variant rs587781593 associates Disease breast cancer. Variant rs967461896 associates Disease breast cancer. Variant rs587781894 associates Disease breast cancer. Variant rs61747636 associates Disease breast cancer. Variant rs1267759029 associates Disease breast cancer. Variant rs370976710 associates Disease breast cancer. Variant rs587781614 associates Disease breast cancer. Variant rs56009889 associates Disease breast cancer. Variant rs8176316 associates Disease breast cancer. Variant rs587776547 associates Disease breast cancer. Variant rs61748181 associates Disease breast cancer. Variant rs587778069 associates Disease breast cancer. Variant rs56091799 associates Disease breast cancer. Variant rs56087561 associates Disease breast cancer. Variant rs56039126 associates Disease breast cancer. Variant rs864622613 associates Disease breast cancer. Variant rs56158747 associates Disease breast cancer. Variant rs557444760 associates Disease breast cancer. Variant rs587778719 associates Disease breast cancer. Variant rs587781991 associates Disease breast cancer. Variant rs397507643 associates Disease breast cancer. Variant rs587781269 associates Disease breast cancer. Variant rs587781948 associates Disease breast cancer. Variant rs587776650 associates Disease breast cancer. Variant rs587779934 associates Disease breast cancer. Variant rs587779315 associates Disease breast cancer. Variant rs56187033 associates Disease breast cancer. Variant rs587781525 associates Disease breast cancer. Variant rs587781296 associates Disease breast cancer. Variant rs1135401868 associates Disease breast cancer. Variant rs149633775 associates Disease breast cancer. Variant rs587780863 associates Disease breast cancer. Variant rs587782889 associates Disease breast cancer. Variant rs397507649 associates Disease breast cancer. Variant rs587782313 associates Disease breast cancer. Variant rs574271678 associates Disease breast cancer. Variant rs587781730 associates Disease breast cancer. Variant rs587781874 associates Disease breast cancer. \\nQuestion: Out of the given list, which Variant is associated with uterine fibroid and triple-receptor negative breast cancer. Given list is: rs1709393, rs3118470, rs1107345, rs78378222, rs1122171'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048938.3087375}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bea4d348c21332f5dbfaa6c5578288bb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bea4d348c21332f5dbfaa6c5578288bb/output.pkl Binary files differnew file mode 100644 index 0000000..1af7add --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/bea4d348c21332f5dbfaa6c5578288bb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c01b52aa8ede080283ec700bbf29ad10/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c01b52aa8ede080283ec700bbf29ad10/metadata.json new file mode 100644 index 0000000..3760821 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c01b52aa8ede080283ec700bbf29ad10/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46912145614624023, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with pancreatic carcinoma and malaria. Given list is: HLA-DQA1, CACNA1S, KAT2B, ABO, ATXN2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048133.5856917}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c01b52aa8ede080283ec700bbf29ad10/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c01b52aa8ede080283ec700bbf29ad10/output.pkl Binary files differnew file mode 100644 index 0000000..1874ea4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c01b52aa8ede080283ec700bbf29ad10/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c08bbd29f7271cada544da20d7fa1dc2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c08bbd29f7271cada544da20d7fa1dc2/metadata.json new file mode 100644 index 0000000..5ddab5c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c08bbd29f7271cada544da20d7fa1dc2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.40157127380371094, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with inflammatory bowel disease and ulcerative colitis. Given list is: GATA3, IL10, HOXD3, IL23R, TNFSF15'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988532.7222166}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c08bbd29f7271cada544da20d7fa1dc2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c08bbd29f7271cada544da20d7fa1dc2/output.pkl Binary files differnew file mode 100644 index 0000000..1954e9e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c08bbd29f7271cada544da20d7fa1dc2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0e6cb18e277bc99233dd2ff52d89f07/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0e6cb18e277bc99233dd2ff52d89f07/metadata.json new file mode 100644 index 0000000..f61bcdf --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0e6cb18e277bc99233dd2ff52d89f07/metadata.json @@ -0,0 +1 @@ +{"duration": 0.496021032333374, "input_args": {"instruction": "'Context: Disease oropharynx cancer associates Gene HLA-DQB1. Variant rs28418426 associates Disease oropharynx cancer. Variant rs189602139 associates Disease oropharynx cancer. Variant rs1229984 associates Disease oropharynx cancer. Variant rs4318431 associates Disease oropharynx cancer. Disease nephrotic syndrome associates Gene ANLN. Variant rs1569495819 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene HLA-DQB1. Disease nephrotic syndrome associates Gene ZNF592. Disease nephrotic syndrome associates Gene COL4A4. Variant rs529211517 associates Disease nephrotic syndrome. Variant rs4642516 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene COL4A3. Disease nephrotic syndrome associates Gene ZNFX1. Disease nephrotic syndrome associates Gene COL4A5. Variant rs2060521579 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TP53RK. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs2045394381 associates Disease nephrotic syndrome. Variant rs2063103741 associates Disease nephrotic syndrome. Variant rs959473971 associates Disease nephrotic syndrome. Variant rs565501407 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PAX2. Variant rs1054215531 associates Disease nephrotic syndrome. Variant rs369558225 associates Disease nephrotic syndrome. Variant rs1973174583 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP85. Disease nephrotic syndrome associates Gene PTPRO. Variant rs534522842 associates Disease nephrotic syndrome. Variant rs104886210 associates Disease nephrotic syndrome. Variant rs554480714 associates Disease nephrotic syndrome. Variant rs1223251037 associates Disease nephrotic syndrome. Variant rs751611955 associates Disease nephrotic syndrome. Variant rs2079386835 associates Disease nephrotic syndrome. Variant rs145623004 associates Disease nephrotic syndrome. Variant rs2045467851 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP205. Variant rs886058682 associates Disease nephrotic syndrome. Variant rs1973238637 associates Disease nephrotic syndrome. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs886058680 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene FN1. Variant rs786204632 associates Disease nephrotic syndrome. Variant rs9273542 associates Disease nephrotic syndrome. Variant rs369363545 associates Disease nephrotic syndrome. Variant HLA-DQA1*02:01 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ITGA3. Variant rs1800492946 associates Disease nephrotic syndrome. Variant rs886058681 associates Disease nephrotic syndrome. Variant rs118203956 associates Disease nephrotic syndrome. Variant rs143284092 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene APOA1. Variant rs2016645859 associates Disease nephrotic syndrome. Variant rs149560153 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene WDR73. Variant HLA-DQB1*03 associates Disease nephrotic syndrome. Variant rs766482429 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene C1QBP. Variant HLA-DQB1*03:03 associates Disease nephrotic syndrome. Variant rs2068656107 associates Disease nephrotic syndrome. Variant rs886058679 associates Disease nephrotic syndrome. Variant rs150183033 associates Disease nephrotic syndrome. Variant rs1933652537 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Variant rs762704370 associates Disease nephrotic syndrome. Variant rs886047492 associates Disease nephrotic syndrome. Variant rs776859868 associates Disease nephrotic syndrome. Variant rs764181464 associates Disease nephrotic syndrome. Variant rs781347673 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NUP160. Variant rs759043857 associates Disease nephrotic syndrome. Variant HLA-DQA1*01 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TNFSF15. Variant rs140511594 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Variant rs370860586 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NPHP1. \\nQuestion: Out of the given list, which Gene is associated with oropharynx cancer and nephrotic syndrome. Given list is: FER, HLA-DQB1, FTO, SLC2A9, RAD51B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990068.9875264}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0e6cb18e277bc99233dd2ff52d89f07/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0e6cb18e277bc99233dd2ff52d89f07/output.pkl Binary files differnew file mode 100644 index 0000000..f3d15e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0e6cb18e277bc99233dd2ff52d89f07/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0f274de36fe12d086947d945f1da3fd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0f274de36fe12d086947d945f1da3fd/metadata.json new file mode 100644 index 0000000..3ffa3e1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0f274de36fe12d086947d945f1da3fd/metadata.json @@ -0,0 +1 @@ +{"duration": 1.0719130039215088, "input_args": {"instruction": "'Context: Disease autoimmune disease associates Gene PRKCQ. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene XRCC6.. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene XRCC5. Disease autoimmune disease associates Gene SLC26A4. Disease autoimmune disease associates Gene HLA-DPB1. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene CLEC16A. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene KIF5A. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene CCL21. Disease autoimmune disease associates Gene PRKCD. Disease autoimmune disease associates Gene CCL2. Disease autoimmune disease associates Gene NFKB2. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene NFKB1. Disease autoimmune disease associates Gene KLRK1. Disease autoimmune disease associates Gene FOXP3. Disease autoimmune disease associates Gene SCGB3A2. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene NFKBIL1. Disease autoimmune disease associates Gene ZFP36L1. Disease autoimmune disease associates Gene CYP27B1. Disease autoimmune disease associates Gene ERBB3. Disease autoimmune disease associates Gene TYK2. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene CD58. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene HLA-DMB. Disease autoimmune disease associates Gene VDR. Disease autoimmune disease associates Gene HLA-DRA. Disease autoimmune disease associates Gene IKZF4. Disease autoimmune disease associates Gene LACC1. Disease autoimmune disease associates Gene DNASE1. Disease autoimmune disease associates Gene ABCB1. Disease autoimmune disease associates Gene IKZF3. Disease autoimmune disease associates Gene UBE2L3. Disease autoimmune disease associates Gene HSPA1B. Disease autoimmune disease associates Gene GATA3. Disease autoimmune disease associates Gene TREX1. Disease autoimmune disease associates Gene BLK. Disease autoimmune disease associates Gene IKZF1. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene KRT16. Disease keratosis associates Gene PERP. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene KRT6A. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene GJB3. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene KRT6C. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene GJA1. Disease keratosis associates Gene SASH1. Disease keratosis associates Gene KANK2. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene DSG1. Disease keratosis associates Gene GJB6. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene RHBDF2. Disease keratosis associates Gene CAST. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene JUP. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene TAT. Disease keratosis associates Gene SMARCAD1. Disease keratosis associates Gene DSP. Disease keratosis associates Gene SLURP1. Disease keratosis resembles Disease acrodermatitis. Disease keratosis associates Gene RSPO1. Disease keratosis resembles Disease occupational dermatitis. \\nQuestion: Out of the given list, which Variant is associated with autoimmune disease and keratinocyte carcinoma\"@e. Given list is: rs259919, rs10455872, rs11958220, rs72928038, rs141343442'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049118.7640326}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0f274de36fe12d086947d945f1da3fd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0f274de36fe12d086947d945f1da3fd/output.pkl Binary files differnew file mode 100644 index 0000000..7f7182d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c0f274de36fe12d086947d945f1da3fd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c12d5fc5d91b7ac3036f116755f64c92/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c12d5fc5d91b7ac3036f116755f64c92/metadata.json new file mode 100644 index 0000000..a524af3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c12d5fc5d91b7ac3036f116755f64c92/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4078819751739502, "input_args": {"instruction": "'Context: Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Disease idiopathic pulmonary fibrosis associates Gene HLA-DRB1. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1232712 associates Disease idiopathic pulmonary fibrosis. Variant rs2609259 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs371769427 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs1057520003 associates Disease lung adenocarcinoma. Variant rs1057520001 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs11610143 associates Disease lung adenocarcinoma. Variant rs1057520006 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs1057520005 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs28933406 associates Disease lung adenocarcinoma. Variant rs121913476 associates Disease lung adenocarcinoma. Variant rs1057520004 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs866775781 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs1057520002 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs138729528 associates Disease lung adenocarcinoma. Variant rs1057520008 associates Disease lung adenocarcinoma. Variant rs1057520007 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs377767347 associates Disease lung adenocarcinoma. Variant rs13080835 associates Disease lung adenocarcinoma. Variant rs397517102 associates Disease lung adenocarcinoma. Variant rs380286 associates Disease lung adenocarcinoma. Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs1057520012 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs104894230 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs11639372 associates Disease lung adenocarcinoma. Variant rs1057519934 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs1057520017 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs121913370 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs397507483 associates Disease lung adenocarcinoma. Variant rs1057519908 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs121913499 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs1057519782 associates Disease lung adenocarcinoma. Variant rs1057519045 associates Disease lung adenocarcinoma. Variant rs1057519935 associates Disease lung adenocarcinoma. Variant rs121913496 associates Disease lung adenocarcinoma. Variant rs1057519986 associates Disease lung adenocarcinoma. Variant rs1057519984 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs753660142 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and lung adenocarcinoma. Given list is: HLA-B, CFH, PSCA, TERT, USHBP1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989585.9582329}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c12d5fc5d91b7ac3036f116755f64c92/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c12d5fc5d91b7ac3036f116755f64c92/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c12d5fc5d91b7ac3036f116755f64c92/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c17df3ba921d3e0e9949824f0e647d4d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c17df3ba921d3e0e9949824f0e647d4d/metadata.json new file mode 100644 index 0000000..ab4400d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c17df3ba921d3e0e9949824f0e647d4d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5792179107666016, "input_args": {"instruction": "'Context: Disease head and neck cancer associates Gene COL4A6. Disease head and neck cancer associates Gene CTNNB1. Disease head and neck cancer associates Gene COL4A5. Disease head and neck cancer associates Gene ADH1B. Disease head and neck cancer associates Gene COL14A1. Disease head and neck cancer associates Gene TP53. Disease head and neck cancer associates Gene PIK3CA. Disease head and neck cancer associates Gene STAT1. Gene COL7A1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene HLA-DQB1. Disease head and neck cancer associates Gene CTHRC1. Gene ALDH3A1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene TGFBR2. Gene CRCT1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene FOXE1. Disease head and neck cancer associates Gene CDKN2A. Variant rs146795390 associates Disease head and neck cancer. Disease head and neck cancer associates Gene ASCC1. Variant rs1057519830 associates Disease head and neck cancer. Gene CACNA1S expressedin Disease head and neck cancer. Gene ALOX12B expressedin Disease head and neck cancer. Gene COL17A1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene NOTCH1. Gene CDH26 expressedin Disease head and neck cancer. Gene MIR27B associates Disease head and neck cancer. Disease head and neck cancer associates Gene FH. Gene ACAA1 marker Disease head and neck cancer. Variant rs121913344 associates Disease head and neck cancer. Disease head and neck cancer associates Gene DCC. Variant rs1453414 associates Disease head and neck cancer. Gene KRT36 expressedin Disease head and neck cancer. Gene CYSRT1 expressedin Disease head and neck cancer. Gene MIR26B associates Disease head and neck cancer. Gene COL7A1 marker Disease head and neck cancer. Gene MIR363 associates Disease head and neck cancer. Gene ATP13A5 expressedin Disease head and neck cancer. Gene SLC6A15 expressedin Disease head and neck cancer. Gene SLC39A2 expressedin Disease head and neck cancer. Variant rs121913231 associates Disease head and neck cancer. Gene MIR133A1 associates Disease head and neck cancer. Gene KRT24 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHB. Variant rs762384959 associates Disease head and neck cancer. Gene SLC44A4 marker Disease head and neck cancer. Gene HEPHL1 expressedin Disease head and neck cancer. Gene KLHDC7B expressedin Disease head and neck cancer. Gene CCNA1 expressedin Disease head and neck cancer. Gene FGFBP1 expressedin Disease head and neck cancer. Gene CCDC190 expressedin Disease head and neck cancer. Gene SLC35E2B marker Disease head and neck cancer. Disease head and neck cancer associates Gene HRAS. Disease head and neck cancer associates Gene APC. Variant rs854936 associates Disease head and neck cancer. Gene KRT34 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHC. Disease head and neck cancer associates Gene CHEK2. Disease head and neck cancer associates Gene PTEN. Gene MIR133A2 associates Disease head and neck cancer. Gene ALDH3A1 marker Disease head and neck cancer. Gene FABP4 expressedin Disease head and neck cancer. Gene KRT38 expressedin Disease head and neck cancer. Gene COX6A2 expressedin Disease head and neck cancer. Gene FABP5 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHA. Gene PPP1R27 expressedin Disease head and neck cancer. Gene MIR302C associates Disease head and neck cancer. Gene MIR196A2 associates Disease head and neck cancer. Gene C10orf71 expressedin Disease head and neck cancer. Gene MIR146B associates Disease head and neck cancer. Gene DNAH17 expressedin Disease head and neck cancer. Gene KRT6A expressedin Disease head and neck cancer. Gene C21orf58 marker Disease head and neck cancer. Gene MIR125B1 associates Disease head and neck cancer. Gene CACNG1 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene MDM2. Disease liver cirrhosis associates Gene MUC5B. Disease liver cirrhosis associates Gene TERT. Disease liver cirrhosis associates Gene TP53. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene NOTCH1. Disease liver cirrhosis associates Gene TSBP1. Disease liver cirrhosis associates Gene TGFB1. Disease liver cirrhosis associates Gene TCF4. Disease liver cirrhosis associates Gene TFAM. Disease liver cirrhosis associates Gene CYP7B1. Disease liver cirrhosis associates Gene SLC6A14. Disease liver cirrhosis associates Gene TCTN1. Disease liver cirrhosis associates Gene DNASE2. Variant chr9:5073770 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PIK3CA. Disease liver cirrhosis associates Gene TCTN2. Disease liver cirrhosis associates Gene CTC1. Disease liver cirrhosis associates Gene HAMP. Disease liver cirrhosis associates Gene HLA-B. Disease liver cirrhosis associates Gene CLDN1. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene HDAC9. Variant rs3129943 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ATP6AP2. Disease liver cirrhosis associates Gene KIF3B. Disease liver cirrhosis associates Gene CCDC115. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CTNNB1. Disease liver cirrhosis associates Gene HFE. Variant rs551625260 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene DCTN4. Disease liver cirrhosis associates Gene NHP2. Disease liver cirrhosis associates Gene USB1. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene DYNC2H1. Disease liver cirrhosis associates Gene POU2AF1. Disease liver cirrhosis associates Gene SLC7A7. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene HBB. Gene MIR513A2 associates Disease liver cirrhosis. Variant rs6834314 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene TREX1. Disease liver cirrhosis associates Gene TINF2. Disease liver cirrhosis associates Gene TXNDC15. Disease liver cirrhosis associates Gene HMOX1. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene MTTP. Gene MIR513C associates Disease liver cirrhosis. Variant rs12484700 associates Disease liver cirrhosis. Gene MIR513A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene WDPCP. Disease liver cirrhosis associates Gene TCTN3. Disease liver cirrhosis associates Gene WDR35. Gene MIR29B2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ALDH2. Disease liver cirrhosis associates Gene CC2D2A. Variant rs2896019 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ABHD5. Gene MIR571 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene KRT18. Disease liver cirrhosis associates Gene BMP2. Disease liver cirrhosis associates Gene PTRH2. Variant rs58542926 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CFAP418. Gene MIR29B1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene IFT172. Disease liver cirrhosis associates Gene FOS. Disease liver cirrhosis associates Gene DGUOK. Disease liver cirrhosis associates Gene CCDC28B. Disease liver cirrhosis associates Gene SLC40A1. Disease liver cirrhosis associates Gene ASAH1. Disease liver cirrhosis associates Gene HSD3B7. Variant rs28929474 associates Disease liver cirrhosis. \\nQuestion: Out of the given list, which Gene is associated with head and neck cancer and liver cirrhosis. Given list is: TFAP2B, TERT, USHBP1, CACNA2D1, CRTC1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989949.956369}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c17df3ba921d3e0e9949824f0e647d4d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c17df3ba921d3e0e9949824f0e647d4d/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c17df3ba921d3e0e9949824f0e647d4d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1a25d5229f7d850cd907610b0127784/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1a25d5229f7d850cd907610b0127784/metadata.json new file mode 100644 index 0000000..fd2fa8e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1a25d5229f7d850cd907610b0127784/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4107222557067871, "input_args": {"instruction": "'Context: Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Variant rs2609259 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant chr11:1102586 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1232712 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs12912339 associates Disease idiopathic pulmonary fibrosis. Disease lung carcinoma associates Gene CYP2A6. Disease lung carcinoma associates Gene CYP8B1. Variant rs11610143 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs12914385 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs34244947 associates Disease lung carcinoma. Disease lung carcinoma associates Gene PDS5B. Variant rs116295105 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs577626090 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Disease lung carcinoma associates Gene IRF4. Variant rs121913351 associates Disease lung carcinoma. Variant rs13191445 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. Variant rs121913530 associates Disease lung carcinoma. Disease lung carcinoma associates Gene SLC17A4. Variant rs145093187 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs397517138 associates Disease lung carcinoma. Gene MIR383 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs121913355 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs121909071 associates Disease lung carcinoma. Disease lung carcinoma associates Gene SLC44A4. Variant rs8042374 associates Disease lung carcinoma. Variant rs397517128 associates Disease lung carcinoma. Disease lung carcinoma associates Gene DNAJB4. Variant rs56113850 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs11639372 associates Disease lung carcinoma. Gene MIR616 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs1562939198 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Variant rs387906661 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs34662244 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Gene MIR15B associates Disease lung carcinoma. \\nQuestion: Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and lung carcinoma. Given list is: ABCG2, SULT1B1, ERAP1, TERT, CHST11'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989587.2895508}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1a25d5229f7d850cd907610b0127784/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1a25d5229f7d850cd907610b0127784/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1a25d5229f7d850cd907610b0127784/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e64d8a30023cd18bf2056f4fe258e4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e64d8a30023cd18bf2056f4fe258e4/metadata.json new file mode 100644 index 0000000..65fab8c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e64d8a30023cd18bf2056f4fe258e4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5707173347473145, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and immunoglobulin alpha deficiency. Given list is: SAMD9L, CDK8, HLA-DQA1, CFH, PRKN'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048182.767717}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e64d8a30023cd18bf2056f4fe258e4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e64d8a30023cd18bf2056f4fe258e4/output.pkl Binary files differnew file mode 100644 index 0000000..6241877 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e64d8a30023cd18bf2056f4fe258e4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e7d2997f38316dd5626ab9a006a217/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e7d2997f38316dd5626ab9a006a217/metadata.json new file mode 100644 index 0000000..c04516e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e7d2997f38316dd5626ab9a006a217/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5024089813232422, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and lung carcinoma. Given list is: ABCG2, SULT1B1, ERAP1, TERT, CHST11'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989586.4660316}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e7d2997f38316dd5626ab9a006a217/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e7d2997f38316dd5626ab9a006a217/output.pkl Binary files differnew file mode 100644 index 0000000..30902dc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c1e7d2997f38316dd5626ab9a006a217/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c25f4831b2d68115f2c1341aac12d12b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c25f4831b2d68115f2c1341aac12d12b/metadata.json new file mode 100644 index 0000000..02e1a63 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c25f4831b2d68115f2c1341aac12d12b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5029988288879395, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant rs3891175 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-DQA2. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-G. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant HAL-DRB1*13 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene VWA7.. Variant rs9272143 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Variant rs57746686 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Variant rs4282438 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Variant rs75393409 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene ACACB. Variant rs116149201 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs28752857 associates Disease cervix carcinoma. Variant rs9277952 associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Variant rs115137622 associates Disease cervix carcinoma. Variant rs73730372 associates Disease cervix carcinoma. Variant rs7457728 associates Disease cervix carcinoma. Gene MIR361 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Variant rs2523496 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Gene MIR139 associates Disease cervix carcinoma. Variant rs9272050 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene INS-IGF2. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and cervix carcinoma. Given list is: FAT3, HLA-DPA1, HLA-DQA1, CACNA1S, CACNA2D1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989652.2684898}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c25f4831b2d68115f2c1341aac12d12b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c25f4831b2d68115f2c1341aac12d12b/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c25f4831b2d68115f2c1341aac12d12b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c265655d1ffa04bc1e7561b364dc925e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c265655d1ffa04bc1e7561b364dc925e/metadata.json new file mode 100644 index 0000000..bd7510e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c265655d1ffa04bc1e7561b364dc925e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6802542209625244, "input_args": {"instruction": "\"Context: Variant rs1343151; rs12567232; rs2902440; rs11209003; rs2201841; rs1004819; rs11465804; rs6669582; rs10789230; rs11209002; rs2064689; rs11465802; rs10889677; rs11209026; rs10889676; rs9988642 associates Disease Crohn's disease. Variant rs9271060 associates Disease Crohn's disease. Variant rs113973829 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs4796791 associates Disease Crohn's disease. Variant rs61959448 associates Disease Crohn's disease. Variant rs34779708 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs11879191 associates Disease Crohn's disease. Variant rs11175593 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Variant rs4246905 associates Disease Crohn's disease. Variant rs4263839 associates Disease Crohn's disease. Variant rs5743289 associates Disease Crohn's disease. Variant rs3197999 associates Disease Crohn's disease. Variant rs148319899 associates Disease Crohn's disease. Variant rs4871611 associates Disease Crohn's disease. Variant rs2838519 associates Disease Crohn's disease. Variant rs2301436 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs6738825 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Variant rs78898421 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs17309827 associates Disease Crohn's disease. Variant rs1998598 associates Disease Crohn's disease. Variant rs28449958 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs9297145 associates Disease Crohn's disease. Variant rs13204742 associates Disease Crohn's disease. Variant rs2930047 associates Disease Crohn's disease. Variant rs17391694 associates Disease Crohn's disease. Variant rs4787458 associates Disease Crohn's disease. Variant rs17695092 associates Disease Crohn's disease. Variant rs9286879 associates Disease Crohn's disease. Variant rs516246 associates Disease Crohn's disease. Variant rs11581607 associates Disease Crohn's disease. Variant rs9868809 associates Disease Crohn's disease. Variant rs6738490 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Variant rs2823286 associates Disease Crohn's disease. Variant rs13204048 associates Disease Crohn's disease. Variant rs4409764 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs9292777 associates Disease Crohn's disease. Variant rs395157 associates Disease Crohn's disease. Variant rs2538470 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs10995271 associates Disease Crohn's disease. Variant rs9491891 associates Disease Crohn's disease. Variant rs10073277 associates Disease Crohn's disease. Variant rs12946510 associates Disease Crohn's disease. Variant rs6752107 associates Disease Crohn's disease. Variant rs4768236 associates Disease Crohn's disease. Variant rs1799964 associates Disease Crohn's disease. Variant rs11871801 associates Disease Crohn's disease. Variant rs4957294 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Variant rs1260326 associates Disease Crohn's disease. Variant rs9271366 associates Disease Crohn's disease. Variant rs140068907 associates Disease Crohn's disease. Variant rs4266763 associates Disease Crohn's disease. Variant rs12942547 associates Disease Crohn's disease. Variant rs3897478 associates Disease Crohn's disease. Variant rs2266959 associates Disease Crohn's disease. Variant rs12994997 associates Disease Crohn's disease. Variant rs4821544 associates Disease Crohn's disease. Variant rs1432296 associates Disease Crohn's disease. Variant rs5763767 associates Disease Crohn's disease. Variant rs34687326 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs11574938 associates Disease sclerosing cholangitis. Variant rs114202211 associates Disease sclerosing cholangitis. Variant rs4655215 associates Disease sclerosing cholangitis. Variant rs4676410 associates Disease sclerosing cholangitis. Variant rs12932970 associates Disease sclerosing cholangitis. Variant rs66504140 associates Disease sclerosing cholangitis. Variant rs3853824 associates Disease sclerosing cholangitis. Variant rs12943464 associates Disease sclerosing cholangitis. Variant rs67025039 associates Disease sclerosing cholangitis. Variant rs28550029 associates Disease sclerosing cholangitis. Variant rs3184504 associates Disease sclerosing cholangitis. Variant rs2145623 associates Disease sclerosing cholangitis. Variant rs4971079 associates Disease sclerosing cholangitis. Variant rs12968719 associates Disease sclerosing cholangitis. Variant rs4946717 associates Disease sclerosing cholangitis. Variant rs11750385 associates Disease sclerosing cholangitis. Variant rs4986790 associates Disease sclerosing cholangitis. Variant rs4851529 associates Disease sclerosing cholangitis. Variant rs6781808 associates Disease sclerosing cholangitis. Variant rs4703855 associates Disease sclerosing cholangitis. Variant rs12942547 associates Disease sclerosing cholangitis. Variant rs6863411 associates Disease sclerosing cholangitis. Variant rs35320439 associates Disease sclerosing cholangitis. Variant rs4921482 associates Disease sclerosing cholangitis. Variant rs3197999 associates Disease sclerosing cholangitis. Variant rs12987977 associates Disease sclerosing cholangitis. Variant rs11691685 associates Disease sclerosing cholangitis. Variant rs4243971 associates Disease sclerosing cholangitis. Variant rs11749040 associates Disease sclerosing cholangitis. Variant rs61861422 associates Disease sclerosing cholangitis. Variant rs6651252 associates Disease sclerosing cholangitis. Variant rs28998802 associates Disease sclerosing cholangitis. Variant rs35667974 associates Disease sclerosing cholangitis. Variant rs4143332 associates Disease sclerosing cholangitis. Variant rs9687958 associates Disease sclerosing cholangitis. Variant rs9491891 associates Disease sclerosing cholangitis. Variant rs28701841 associates Disease sclerosing cholangitis. Variant rs4845604 associates Disease sclerosing cholangitis. Variant rs9977672 associates Disease sclerosing cholangitis. Variant rs9889296 associates Disease sclerosing cholangitis. Variant rs145832854 associates Disease sclerosing cholangitis. Variant rs35874463 associates Disease sclerosing cholangitis. Variant rs11649613 associates Disease sclerosing cholangitis. Variant rs3747517 associates Disease sclerosing cholangitis. Variant rs11306716 associates Disease sclerosing cholangitis. Variant rs34779708 associates Disease sclerosing cholangitis. Variant rs80060485 associates Disease sclerosing cholangitis. Variant rs35018800 associates Disease sclerosing cholangitis. Variant rs16841904 associates Disease sclerosing cholangitis. Variant rs6697886 associates Disease sclerosing cholangitis. Variant rs34804116 associates Disease sclerosing cholangitis. Variant rs61802846 associates Disease sclerosing cholangitis. Variant rs11098964 associates Disease sclerosing cholangitis. Variant rs3776414 associates Disease sclerosing cholangitis. Variant rs11749391 associates Disease sclerosing cholangitis. Variant rs60652743 associates Disease sclerosing cholangitis. Variant rs35074907 associates Disease sclerosing cholangitis. Variant rs13407913 associates Disease sclerosing cholangitis. Variant rs6058869 associates Disease sclerosing cholangitis. Variant rs1800682 associates Disease sclerosing cholangitis. Variant rs4728142 associates Disease sclerosing cholangitis. Variant rs56167332 associates Disease sclerosing cholangitis. Variant rs34920465 associates Disease sclerosing cholangitis. Variant rs116046827 associates Disease sclerosing cholangitis. Variant rs2538470 associates Disease sclerosing cholangitis. Variant rs80174646 associates Disease sclerosing cholangitis. Variant rs2823288 associates Disease sclerosing cholangitis. Variant rs2050392 associates Disease sclerosing cholangitis. Variant rs11117431 associates Disease sclerosing cholangitis. Variant rs3766606 associates Disease sclerosing cholangitis. Variant rs6556411 associates Disease sclerosing cholangitis. Variant rs4672505 associates Disease sclerosing cholangitis. Variant rs13107612 associates Disease sclerosing cholangitis. Variant rs183686347 associates Disease sclerosing cholangitis. Variant rs2266961 associates Disease sclerosing cholangitis. \\nQuestion: Out of the given list, which Variant is associated with Crohn's disease and sclerosing cholangitis. Given list is: rs1047891, rs9268905, rs3197999, rs1025128, rs4624820\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049044.293401}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c265655d1ffa04bc1e7561b364dc925e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c265655d1ffa04bc1e7561b364dc925e/output.pkl Binary files differnew file mode 100644 index 0000000..5255b14 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c265655d1ffa04bc1e7561b364dc925e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c277153e6e9f21af379487230ac4eca6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c277153e6e9f21af379487230ac4eca6/metadata.json new file mode 100644 index 0000000..7a2026f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c277153e6e9f21af379487230ac4eca6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6285207271575928, "input_args": {"instruction": "\"Context: Variant rs1057519960 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA1. Variant rs752471895 associates Disease myelodysplastic syndrome. Variant rs752856195 associates Disease myelodysplastic syndrome. Variant rs104894230 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA2. Variant rs147001633 associates Disease myelodysplastic syndrome. Variant rs373145711 associates Disease myelodysplastic syndrome. Variant rs387906631 associates Disease myelodysplastic syndrome. Variant rs78898975 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene XRCC2. Disease myelodysplastic syndrome associates Gene PTPN11. Disease myelodysplastic syndrome associates Gene DKC1. Variant rs1576745225 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CDKN2A. Disease myelodysplastic syndrome associates Gene CHEK2. Variant rs121913502 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RUNX1. Variant rs752746786 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene ADA2. Disease myelodysplastic syndrome associates Gene ERCC4. Disease myelodysplastic syndrome associates Gene TAF2. Variant rs769081887 associates Disease myelodysplastic syndrome. Variant rs121913500 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Variant rs121434595 associates Disease myelodysplastic syndrome. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs104894229 associates Disease myelodysplastic syndrome.. Disease myelodysplastic syndrome associates Gene DNAJC21. Disease myelodysplastic syndrome associates Gene FANCB. Variant rs12203592 associates Disease myelodysplastic syndrome. Variant rs371246226 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene RAD51C. Variant rs121913237 associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Variant rs121434596 associates Disease myelodysplastic syndrome. Variant rs1203207717 associates Disease myelodysplastic syndrome. Variant rs193303018 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CEP57. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene BRCA1. Disease myelodysplastic syndrome associates Gene SH2B3. Disease myelodysplastic syndrome associates Gene FANCD2. Variant rs769053835 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene SMARCD2. Disease myelodysplastic syndrome associates Gene BRCA2. Disease myelodysplastic syndrome associates Gene RAD51. Disease myelodysplastic syndrome associates Gene NAGS. Disease myelodysplastic syndrome associates Gene FANCI. Disease myelodysplastic syndrome associates Gene HAX1. Disease myelodysplastic syndrome associates Gene PALB2. Variant rs371769427 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GNB1. Disease myelodysplastic syndrome associates Gene FANCC. Gene MIR125B1 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCL. Disease Takayasu's arteritis associates Gene HLA-DQB2. Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene ABHD16A. Disease Takayasu's arteritis associates Gene TRIM26. Disease Takayasu's arteritis associates Gene MSH5. Disease Takayasu's arteritis associates Gene PTK2B. Variant HLA-B*1501 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VWA7. Variant rs10919543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene HLA-DOB. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Variant HLAB*1501 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene IL6. Variant HLA-B*1302 associates Disease Takayasu's arteritis. Variant HLA-DQB1*0502 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene TRIM31. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs76457959 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene GPANK1. Disease Takayasu's arteritis associates Gene TRIM40. Variant chr6:31570670 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs117298325 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene VPS8. Variant HLAB*1302 associates Disease Takayasu's arteritis. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs28834970 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PSORS1C1. Disease Takayasu's arteritis associates Gene BAG6. Variant rs61444472 associates Disease Takayasu's arteritis. \\nQuestion: Out of the given list, which Gene is associated with myelodysplastic syndrome and Takayasu's arteritis. Given list is: BTN3A1, AKAP6, CACNA2D1, HLA-B, CACNA1A\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989828.1091259}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c277153e6e9f21af379487230ac4eca6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c277153e6e9f21af379487230ac4eca6/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c277153e6e9f21af379487230ac4eca6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c3b4c388c3a94497f734e3c2896fcc29/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c3b4c388c3a94497f734e3c2896fcc29/metadata.json new file mode 100644 index 0000000..fdb1f65 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c3b4c388c3a94497f734e3c2896fcc29/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6824023723602295, "input_args": {"instruction": "'Context: Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene ADAP2. Disease estrogen-receptor negative breast cancer associates Gene BRCA2. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene ADCY9. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs11374964 associates Disease estrogen-receptor negative breast cancer. Variant rs4849887 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene ESR1. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs2747652 associates Disease estrogen-receptor negative breast cancer. Disease lung adenocarcinoma associates Gene CYP2A6. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Gene MIR487B associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs104894226 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Gene MIR449B associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs3117582 associates Disease lung adenocarcinoma. Variant rs786202962 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs121913273 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs867384286 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs104894229 associates Disease lung adenocarcinoma. Variant rs193920774 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs869025608 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs863224451 associates Disease lung adenocarcinoma. Variant rs121913279 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs12875562 associates Disease lung adenocarcinoma. Variant rs2179920 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs10429489 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs1057520012 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs28929495 associates Disease lung adenocarcinoma. Variant rs530941076 associates Disease lung adenocarcinoma. Variant rs1057519045 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs1057519984 associates Disease lung adenocarcinoma. Variant rs104894230 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs867262025 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs587782664 associates Disease lung adenocarcinoma. Variant rs104894231 associates Disease lung adenocarcinoma. Variant rs28934574 associates Disease lung adenocarcinoma. Variant rs2736100 associates Disease lung adenocarcinoma. Variant rs1057519982 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and lung adenocarcinoma. Given list is: SAMD9L, PTPRD, DAB2IP, IL23R, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048073.1912203}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c3b4c388c3a94497f734e3c2896fcc29/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c3b4c388c3a94497f734e3c2896fcc29/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c3b4c388c3a94497f734e3c2896fcc29/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c582452d3e11267f7f587d4fdf8c4f7d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c582452d3e11267f7f587d4fdf8c4f7d/metadata.json new file mode 100644 index 0000000..64c86a4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c582452d3e11267f7f587d4fdf8c4f7d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5865232944488525, "input_args": {"instruction": "'Context: Disease dermatomyositis associates Gene HLA-DPB1. Disease dermatomyositis associates Gene HLA-DPA1. Disease childhood type dermatomyositis isa Disease dermatomyositis. Variant HLA_DPB1*17 associates Disease dermatomyositis. Variant rs7750458 associates Disease dermatomyositis. Disease dermatomyositis resembles Disease childhood type dermatomyositis. Gene MIR205 associates Disease dermatomyositis. Gene MIR146A associates Disease dermatomyositis. Gene MIR206 associates Disease dermatomyositis. Disease ontology identifier of dermatomyositis is DOID:10223. Disease dermatomyositis resembles Disease connective tissue disease.. Disease dermatomyositis presents Symptom Muscle Weakness. Disease dermatomyositis presents Symptom Skin Manifestations. Disease dermatomyositis resembles Disease myositis. Disease dermatomyositis presents Symptom Myotonia. Disease dermatomyositis isa Disease skin disease. Disease dermatomyositis resembles Disease mixed connective tissue disease. Disease dermatomyositis isa Disease myositis. Disease adult dermatomyositis isa Disease dermatomyositis. Disease dermatomyositis resembles Disease hand dermatosis. Disease dermatomyositis resembles Disease collagen disease. Disease dermatomyositis associates Gene HLA-DPB1. Disease dermatomyositis associates Gene HLA-DPA1. Disease childhood type dermatomyositis isa Disease dermatomyositis. Variant HLA_DPB1*17 associates Disease dermatomyositis. Variant rs7750458 associates Disease dermatomyositis. Disease dermatomyositis resembles Disease childhood type dermatomyositis. Gene MIR205 associates Disease dermatomyositis. Gene MIR146A associates Disease dermatomyositis. Gene MIR206 associates Disease dermatomyositis. Disease ontology identifier of dermatomyositis is DOID:10223. Disease dermatomyositis resembles Disease connective tissue disease.. Disease dermatomyositis presents Symptom Muscle Weakness. Disease dermatomyositis presents Symptom Skin Manifestations. Disease dermatomyositis resembles Disease myositis. Disease dermatomyositis presents Symptom Myotonia. Disease dermatomyositis isa Disease skin disease. Disease dermatomyositis resembles Disease mixed connective tissue disease. Disease dermatomyositis isa Disease myositis. Disease adult dermatomyositis isa Disease dermatomyositis. Disease dermatomyositis resembles Disease hand dermatosis. Disease dermatomyositis resembles Disease collagen disease. \\nQuestion: Out of the given list, which Gene is associated with childhood type dermatomyositis and dermatomyositis. Given list is: FTO, PLA2G6, ATP2B1, GSDMB, BRCA2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047947.0893118}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c582452d3e11267f7f587d4fdf8c4f7d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c582452d3e11267f7f587d4fdf8c4f7d/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c582452d3e11267f7f587d4fdf8c4f7d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c5a86a8c443c3f70292115da33a15f39/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c5a86a8c443c3f70292115da33a15f39/metadata.json new file mode 100644 index 0000000..b1f4368 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c5a86a8c443c3f70292115da33a15f39/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5720443725585938, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and lung adenocarcinoma. Given list is: ADGRG6, CDKAL1, TERT, HLA-DPA1, BRCA2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048002.9064689}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c5a86a8c443c3f70292115da33a15f39/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c5a86a8c443c3f70292115da33a15f39/output.pkl Binary files differnew file mode 100644 index 0000000..6238739 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c5a86a8c443c3f70292115da33a15f39/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6395e30c412fcde1776b87992a73488/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6395e30c412fcde1776b87992a73488/metadata.json new file mode 100644 index 0000000..0dbefe3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6395e30c412fcde1776b87992a73488/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6048898696899414, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with central nervous system cancer and lung adenocarcinoma. Given list is: rs7426056, rs2736100, rs2187668, rs2107595, rs7405776'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048994.795128}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6395e30c412fcde1776b87992a73488/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6395e30c412fcde1776b87992a73488/output.pkl Binary files differnew file mode 100644 index 0000000..6238739 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6395e30c412fcde1776b87992a73488/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c67d3fa9b796278d62e340849bfd149e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c67d3fa9b796278d62e340849bfd149e/metadata.json new file mode 100644 index 0000000..07c1faf --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c67d3fa9b796278d62e340849bfd149e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.513730525970459, "input_args": {"instruction": "'Context: Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene PSCA. Disease gastric fundus cancer associates Gene PRKAA1. Disease gastric fundus cancer associates Gene NPIPB2. Disease gastric fundus cancer associates Gene ABO. Disease gastric fundus cancer associates Gene PLCE1. Disease atrophic gastritis associates Gene PSCA. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene LRBA. Disease atrophic gastritis associates Gene IL1RN. Variant rs2294008 associates Disease atrophic gastritis.. Disease atrophic gastritis associates Gene NFKB1. Disease atrophic gastritis associates Gene CDH1. Disease atrophic gastritis associates Gene IFIH1. Disease atrophic gastritis associates Gene IL1B. Disease atrophic gastritis associates Gene KRAS. Gene MIR155 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene CTLA4. \\nQuestion: Out of the given list, which Gene is associated with gastric fundus cancer and atrophic gastritis. Given list is: PSCA, PLG, IL23R, ABO, RP1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050453.2943308}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c67d3fa9b796278d62e340849bfd149e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c67d3fa9b796278d62e340849bfd149e/output.pkl Binary files differnew file mode 100644 index 0000000..33ad383 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c67d3fa9b796278d62e340849bfd149e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6fa49db06d669cb6dc3e42feff9b098/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6fa49db06d669cb6dc3e42feff9b098/metadata.json new file mode 100644 index 0000000..022fab5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6fa49db06d669cb6dc3e42feff9b098/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5996675491333008, "input_args": {"instruction": "'Context: Disease epilepsy associates Gene CLDN16. Disease epilepsy associates Gene CLN8. Variant rs950271605 associates Disease epilepsy. Disease epilepsy associates Gene HAX1. Disease epilepsy associates Gene TCF4. Disease epilepsy associates Gene SLC2A3. Disease epilepsy associates Gene KIF2A. Disease epilepsy associates Gene FRA10AC1. Disease epilepsy associates Gene SLC1A2. Disease epilepsy associates Gene SLC2A1. Disease epilepsy associates Gene CLN6. Disease epilepsy associates Gene CACNB4. Disease epilepsy associates Gene KCNN2. Variant rs1206309859 associates Disease epilepsy. Variant rs1569481993 associates Disease epilepsy. Disease epilepsy associates Gene CNTN2. Disease epilepsy associates Gene FAM149B1. Disease epilepsy associates Gene SLC35A3. Disease epilepsy associates Gene MMP23B. Disease epilepsy associates Gene TCF20. Variant rs1437657927 associates Disease epilepsy. Disease epilepsy associates Gene CNOT3. Disease epilepsy associates Gene FGF10. Disease epilepsy associates Gene SCN2A. Disease epilepsy associates Gene HCN1. Disease epilepsy associates Gene SLC35A1. Disease epilepsy associates Gene SLC35C1. Disease epilepsy associates Gene FBLN1. Disease epilepsy associates Gene NFASC. Variant rs750943685 associates Disease epilepsy. Disease epilepsy associates Gene ACTB. Disease epilepsy associates Gene KIF1A. Variant rs371391758 associates Disease epilepsy. Disease epilepsy associates Gene SLC35A2. Disease epilepsy associates Gene CNOT1. Disease epilepsy associates Gene CLN3. Disease epilepsy associates Gene CAMK2B. Disease epilepsy associates Gene ACTL6A. Disease epilepsy associates Gene FLI1. Variant rs1357963752 associates Disease epilepsy. Variant rs149175905 associates Disease epilepsy. Variant rs1424030074 associates Disease epilepsy. Disease epilepsy associates Gene CLCN2. Disease epilepsy associates Gene CLN5. Disease epilepsy associates Gene SLC6A8. Disease epilepsy associates Gene SLC6A5. Variant rs74308953 associates Disease epilepsy. Variant rs11890028 associates Disease epilepsy. Disease epilepsy associates Gene TGFB1. Variant rs56293456 associates Disease epilepsy. Disease epilepsy associates Gene COL1A2. Variant rs959172804 associates Disease epilepsy. Disease epilepsy associates Gene SCN10A. Variant rs368598376 associates Disease epilepsy. Disease epilepsy associates Gene FLVCR1. Disease epilepsy associates Gene ITSN1. Disease epilepsy associates Gene CACNA1B. Variant rs1483235042 associates Disease epilepsy. Disease epilepsy associates Gene TGFBR3. Disease epilepsy associates Gene FLNA. Disease epilepsy associates Gene NF2. Disease epilepsy associates Gene TCF7L2. Variant rs1567176628 associates Disease epilepsy. Disease epilepsy associates Gene CAMK2A. Disease epilepsy associates Gene CACNA1A. Disease epilepsy associates Gene SLC1A3. Disease epilepsy associates Gene TGFBR2. Variant rs576801855 associates Disease epilepsy. Disease epilepsy associates Gene ATXN10. Disease epilepsy associates Gene KIF4A. Disease epilepsy associates Gene FA2H. Variant rs1567175086 associates Disease epilepsy. Variant rs1596385322 associates Disease epilepsy. Variant rs7591522 associates Disease epilepsy. Disease epilepsy associates Gene KATNB1. Disease focal epilepsy associates Gene SCN2A. Disease focal epilepsy associates Gene SCN1A. Disease focal epilepsy associates Gene SCN1B. Disease focal epilepsy associates Gene CACNA1I. Disease focal epilepsy associates Gene SCN9A. Disease focal epilepsy associates Gene GLI3. Disease focal epilepsy associates Gene CNTNAP2. Disease focal epilepsy associates Gene CAMK2B. Disease focal epilepsy associates Gene CPA6. Disease focal epilepsy associates Gene ITSN1. Disease focal epilepsy associates Gene NBEA. Disease focal epilepsy associates Gene CAMK2A. Disease focal epilepsy associates Gene SLC38A3. Disease focal epilepsy associates Gene TCF4. Disease focal epilepsy associates Gene KCNQ5. Disease focal epilepsy associates Gene HIVEP2. Disease focal epilepsy associates Gene CHRNA4. Disease focal epilepsy associates Gene SLC13A5. Disease focal epilepsy associates Gene GJC2. Disease focal epilepsy associates Gene CHRNB2. Disease focal epilepsy associates Gene CHRNA2. Disease focal epilepsy associates Gene CACNG2. Disease focal epilepsy associates Gene KIF1A. Variant rs200694691 associates Disease focal epilepsy. Disease focal epilepsy associates Gene KCNT1. Disease focal epilepsy associates Gene EPB41L1. Variant rs1057519543 associates Disease focal epilepsy. Variant rs145063086 associates Disease focal epilepsy. Variant rs1057519525 associates Disease focal epilepsy. Variant rs1057519541 associates Disease focal epilepsy. Disease focal epilepsy associates Gene MYT1L. Disease focal epilepsy associates Gene KCNQ2. Variant rs587780455 associates Disease focal epilepsy. Variant rs587784440 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CLTC. Variant rs121917992 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CDH15. Variant rs121917993 associates Disease focal epilepsy. Variant rs1057519554 associates Disease focal epilepsy. Disease focal epilepsy associates Gene CUX1. Disease focal epilepsy associates Gene KDM5B. Disease focal epilepsy associates Gene SLC33A1. Variant rs1318322 associates Disease focal epilepsy. Variant rs121917994 associates Disease focal epilepsy. \\nQuestion: Out of the given list, which Gene is associated with epilepsy and focal epilepsy. Given list is: NEURL1, SCN1A, HAAO, CLDN14, MYBPC3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047827.1233635}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6fa49db06d669cb6dc3e42feff9b098/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6fa49db06d669cb6dc3e42feff9b098/output.pkl Binary files differnew file mode 100644 index 0000000..370efe0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c6fa49db06d669cb6dc3e42feff9b098/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c71037bea6b8b841f4a3c50231ce0b74/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c71037bea6b8b841f4a3c50231ce0b74/metadata.json new file mode 100644 index 0000000..45ca695 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c71037bea6b8b841f4a3c50231ce0b74/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6559188365936279, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with allergic rhinitis and herpes zoster. Given list is: CHST11, HLA-B, HLA-DQB1, RELN, TP53'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048712.1893332}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c71037bea6b8b841f4a3c50231ce0b74/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c71037bea6b8b841f4a3c50231ce0b74/output.pkl Binary files differnew file mode 100644 index 0000000..14b6487 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c71037bea6b8b841f4a3c50231ce0b74/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c780ed949bb324b5ad4eea628480550c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c780ed949bb324b5ad4eea628480550c/metadata.json new file mode 100644 index 0000000..3639155 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c780ed949bb324b5ad4eea628480550c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5178647041320801, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and cutaneous lupus erythematosus. Given list is: PLA2R1, DTNB, FER, HLA-DQA1, PINX1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989822.193472}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c780ed949bb324b5ad4eea628480550c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c780ed949bb324b5ad4eea628480550c/output.pkl Binary files differnew file mode 100644 index 0000000..4108561 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c780ed949bb324b5ad4eea628480550c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c80d4e681acfe036d5bba6944276c3f1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c80d4e681acfe036d5bba6944276c3f1/metadata.json new file mode 100644 index 0000000..a76a749 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c80d4e681acfe036d5bba6944276c3f1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5119009017944336, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with liver cirrhosis and non-alcoholic steatohepatitis. Given list is: SCN1A, EYA2, CACNA2D1, HBB, PNPLA3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989710.8051267}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c80d4e681acfe036d5bba6944276c3f1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c80d4e681acfe036d5bba6944276c3f1/output.pkl Binary files differnew file mode 100644 index 0000000..2529ed0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c80d4e681acfe036d5bba6944276c3f1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8407a8c24355b26365fbd989bb92a25/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8407a8c24355b26365fbd989bb92a25/metadata.json new file mode 100644 index 0000000..405a216 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8407a8c24355b26365fbd989bb92a25/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6600222587585449, "input_args": {"instruction": "'Context: Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs2179920 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs863224451 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs380286 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs5879422 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs31489 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs28933406 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs28408315 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs28929495 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs876659802 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs121913338 associates Disease lung adenocarcinoma. Variant rs3117582 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs80338963 associates Disease lung adenocarcinoma. Variant rs121913273 associates Disease lung adenocarcinoma. Variant rs121913279 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs587776805 associates Disease lung adenocarcinoma. Variant rs371769427 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs1554350382 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs121913331 associates Disease lung adenocarcinoma. Variant rs121913355 associates Disease lung adenocarcinoma. Variant rs104894230 associates Disease lung adenocarcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs387906661 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs144433536 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs4488809 associates Disease lung carcinoma. Variant rs577626090 associates Disease lung carcinoma. Gene MIR383 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Variant rs380286 associates Disease lung carcinoma. Variant rs421629 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Variant rs8042374 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Variant rs3999544 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs34662244 associates Disease lung carcinoma. Gene MIR196A2 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs35952432 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs144943614 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Variant rs13212562 associates Disease lung carcinoma. Variant rs80264589 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs28408315 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs41266839 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs4946256 associates Disease lung carcinoma. Variant rs501942 associates Disease lung carcinoma. Variant rs31489 associates Disease lung carcinoma. Variant rs374787445 associates Disease lung carcinoma. Variant rs34832458 associates Disease lung carcinoma. Variant rs12914385 associates Disease lung carcinoma. Variant rs13201681 associates Disease lung carcinoma. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and lung carcinoma. Given list is: TERT, IL23R, PHACTR1, SLC2A9, JRK'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048725.902269}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8407a8c24355b26365fbd989bb92a25/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8407a8c24355b26365fbd989bb92a25/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8407a8c24355b26365fbd989bb92a25/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8913c7bf976433d06a29de1ee9e3c91/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8913c7bf976433d06a29de1ee9e3c91/metadata.json new file mode 100644 index 0000000..6e09ee6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8913c7bf976433d06a29de1ee9e3c91/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6003055572509766, "input_args": {"instruction": "'Context: Disease lung adenocarcinoma associates Gene TERT. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TP63. Variant rs3117582 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene ATM. Variant rs121913281 associates Disease lung adenocarcinoma. Gene MIR487B associates Disease lung adenocarcinoma. Variant rs869025608 associates Disease lung adenocarcinoma. Variant rs193920774 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene BTNL2. Variant rs31489 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs1057519886 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs1057519784 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs1057519895 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs1057519788 associates Disease lung adenocarcinoma. Variant rs1057519983 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs121917759 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs104894340 associates Disease lung adenocarcinoma. Variant rs1057519980 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Gene MIR101-1 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs121913385 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs2736100 associates Disease lung adenocarcinoma. Variant rs121913273 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Variant rs139429793 associates Disease lung adenocarcinoma. Variant rs397516975 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs1057519045 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs587782082 associates Disease lung adenocarcinoma. Variant rs1057519786 associates Disease lung adenocarcinoma. Variant rs1057519881 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs147001633 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs1057519856 associates Disease lung adenocarcinoma. Variant rs104894226 associates Disease lung adenocarcinoma. Variant rs121913496 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs121913351 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and triple-receptor negative breast cancer. Given list is: BTBD9, NTM, RP1, TERT, CASZ1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048359.3587632}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8913c7bf976433d06a29de1ee9e3c91/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8913c7bf976433d06a29de1ee9e3c91/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/c8913c7bf976433d06a29de1ee9e3c91/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cb5eb3affe167c4bf33158a58d50c3ab/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cb5eb3affe167c4bf33158a58d50c3ab/metadata.json new file mode 100644 index 0000000..de45278 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cb5eb3affe167c4bf33158a58d50c3ab/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7111823558807373, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with epilepsy and focal epilepsy. Given list is: NEURL1, SCN1A, HAAO, CLDN14, MYBPC3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047824.2005188}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cb5eb3affe167c4bf33158a58d50c3ab/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cb5eb3affe167c4bf33158a58d50c3ab/output.pkl Binary files differnew file mode 100644 index 0000000..305623c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cb5eb3affe167c4bf33158a58d50c3ab/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc0cecefdb138dc3005c996ecd1b2689/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc0cecefdb138dc3005c996ecd1b2689/metadata.json new file mode 100644 index 0000000..7638041 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc0cecefdb138dc3005c996ecd1b2689/metadata.json @@ -0,0 +1 @@ +{"duration": 0.41237664222717285, "input_args": {"instruction": "'Context: Variant rs1599507415 associates Disease membranoproliferative glomerulonephritis.. Disease membranoproliferative glomerulonephritis associates Gene LMNB2. Disease membranoproliferative glomerulonephritis associates Gene SOX18. Disease membranoproliferative glomerulonephritis associates Gene CFHR3. Disease membranoproliferative glomerulonephritis associates Gene CFHR2. Disease membranoproliferative glomerulonephritis associates Gene CFHR5. Disease membranoproliferative glomerulonephritis associates Gene ZNFX1. Disease membranoproliferative glomerulonephritis associates Gene C1QB. Disease membranoproliferative glomerulonephritis associates Gene C1QA. Disease membranoproliferative glomerulonephritis associates Gene SLC37A4. Disease membranoproliferative glomerulonephritis associates Gene DNASE2. Disease membranoproliferative glomerulonephritis associates Gene C1QC. Disease membranoproliferative glomerulonephritis associates Gene PGM3. Disease membranoproliferative glomerulonephritis associates Gene DGKE. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene FOXP3. Disease membranous glomerulonephritis associates Gene NFKB1. Variant rs1265159 associates Disease membranous glomerulonephritis. Variant rs230540 associates Disease membranous glomerulonephritis.. Variant rs9267522 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene RNF5. Variant rs3134945 associates Disease membranous glomerulonephritis. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs9272729 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene BTNL2. Disease membranous glomerulonephritis associates Gene TCF19. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs9405192 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene PLA2R1. Variant rs652888 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs3130618 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene EGFL8. Variant rs3129939 associates Disease membranous glomerulonephritis. Disease autoimmune hepatitis associates Gene HLA-DQB1. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene HLA-DQA1. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Gene MIR122 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Gene MIR21 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene SYNPR. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Disease IgA glomerulonephritis associates Gene TGFB1. Variant rs9314614; rs2738058; rs12716641 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene TNFSF12-TNFSF13. Variant rs9275596 associates Disease IgA glomerulonephritis. Variant rs35924503 associates Disease IgA glomerulonephritis. Variant rs6677604 associates Disease IgA glomerulonephritis. Variant rs11574637 associates Disease IgA glomerulonephritis. Variant rs9271082 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene TNFSF13. Variant rs548169927 associates Disease IgA glomerulonephritis. Variant rs191495917 associates Disease IgA glomerulonephritis. Variant rs519662 associates Disease IgA glomerulonephritis. Variant rs6942325 associates Disease IgA glomerulonephritis. Variant rs660895 associates Disease IgA glomerulonephritis. Variant rs2412971 associates Disease IgA glomerulonephritis. Variant rs3129721 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene MTMR3. Variant rs2033562 associates Disease IgA glomerulonephritis. Variant rs9266216 associates Disease IgA glomerulonephritis. Gene MIR146A associates Disease IgA glomerulonephritis. Variant rs56254331 associates Disease IgA glomerulonephritis. Variant rs9314614 associates Disease IgA glomerulonephritis. Disease IgA glomerulonephritis associates Gene ITGAX. Gene MIR29A associates Disease IgA glomerulonephritis. Variant rs2856717 associates Disease IgA glomerulonephritis. Variant rs2885134 associates Disease IgA glomerulonephritis. Variant rs17019602 associates Disease IgA glomerulonephritis. Variant rs12716641 associates Disease IgA glomerulonephritis. Variant rs2295119 associates Disease IgA glomerulonephritis. Variant rs1606888 associates Disease IgA glomerulonephritis. Disease autoimmune disease of blood associates Gene HLA-DPB1.. Disease ontology identifier of autoimmune disease of blood is DOID:0060050. \\nQuestion: Out of the given list, which Gene is associated with membranous glomerulonephritis and autoimmune hepatitis. Given list is: RBFOX1, RORA, IL2RA, BTC, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988424.6274612}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc0cecefdb138dc3005c996ecd1b2689/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc0cecefdb138dc3005c996ecd1b2689/output.pkl Binary files differnew file mode 100644 index 0000000..ee95d1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc0cecefdb138dc3005c996ecd1b2689/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc2381f5d6fb8c10afd9e5d99a5f5528/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc2381f5d6fb8c10afd9e5d99a5f5528/metadata.json new file mode 100644 index 0000000..9841e05 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc2381f5d6fb8c10afd9e5d99a5f5528/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5855271816253662, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with atrophic gastritis and gastric fundus cancer. Given list is: rs2294008, rs9257809, rs35705950, rs12539707, rs2738048'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048991.2081828}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc2381f5d6fb8c10afd9e5d99a5f5528/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc2381f5d6fb8c10afd9e5d99a5f5528/output.pkl Binary files differnew file mode 100644 index 0000000..b1717e2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc2381f5d6fb8c10afd9e5d99a5f5528/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc5eb6f964c1cde979ad23c40c42300c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc5eb6f964c1cde979ad23c40c42300c/metadata.json new file mode 100644 index 0000000..695b08e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc5eb6f964c1cde979ad23c40c42300c/metadata.json @@ -0,0 +1 @@ +{"duration": 1.1322588920593262, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease collagenous colitis resembles Disease Clostridium difficile colitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs1794514 associates Disease autoimmune hepatitis. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant rs72929257 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene HLA-DQA1. Disease autoimmune hepatitis associates Gene HLA-DQB1. Gene MIR122 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene SYNPR. \\nQuestion: Out of the given list, which Variant is associated with collagenous colitis and autoimmune hepatitis. Given list is: rs2187668, rs6426833, rs6969780, rs3787184, rs230540'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048925.817407}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc5eb6f964c1cde979ad23c40c42300c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc5eb6f964c1cde979ad23c40c42300c/output.pkl Binary files differnew file mode 100644 index 0000000..6c48e13 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc5eb6f964c1cde979ad23c40c42300c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc88338a08f8a0b440f6f35c32331d07/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc88338a08f8a0b440f6f35c32331d07/metadata.json new file mode 100644 index 0000000..34998c1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc88338a08f8a0b440f6f35c32331d07/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5477616786956787, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and triple-receptor negative breast cancer. Given list is: RELN, TERT, PLA2R1, DNMT3A, ABO'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989531.51382}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc88338a08f8a0b440f6f35c32331d07/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc88338a08f8a0b440f6f35c32331d07/output.pkl Binary files differnew file mode 100644 index 0000000..b07446d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cc88338a08f8a0b440f6f35c32331d07/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd38d39ca2020b14db1de2fb0e031476/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd38d39ca2020b14db1de2fb0e031476/metadata.json new file mode 100644 index 0000000..19e0745 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd38d39ca2020b14db1de2fb0e031476/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4422152042388916, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with interstitial lung disease and estrogen-receptor negative breast cancer. Given list is: TERT, CACNB2, ERAP1, PRKAA1, SHTN1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988550.488827}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd38d39ca2020b14db1de2fb0e031476/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd38d39ca2020b14db1de2fb0e031476/output.pkl Binary files differnew file mode 100644 index 0000000..bcdd5e7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd38d39ca2020b14db1de2fb0e031476/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd77ecd014c27a74d33d3698dcb00820/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd77ecd014c27a74d33d3698dcb00820/metadata.json new file mode 100644 index 0000000..1bcb656 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd77ecd014c27a74d33d3698dcb00820/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4749481678009033, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and collagenous colitis. Given list is: KALRN, TERT, PLA2R1, NANOS1, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989645.1590767}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd77ecd014c27a74d33d3698dcb00820/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd77ecd014c27a74d33d3698dcb00820/output.pkl Binary files differnew file mode 100644 index 0000000..14b0d19 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd77ecd014c27a74d33d3698dcb00820/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd8900e7c515595e8415441d048bdccd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd8900e7c515595e8415441d048bdccd/metadata.json new file mode 100644 index 0000000..0ee0c1c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd8900e7c515595e8415441d048bdccd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5187907218933105, "input_args": {"instruction": "'Context: Disease nephrotic syndrome associates Gene IL2RG. Disease nephrotic syndrome associates Gene HLA-DQB1. Variant rs9273542 associates Disease nephrotic syndrome. Variant rs543921060 associates Disease nephrotic syndrome. Variant rs4642516 associates Disease nephrotic syndrome. Variant rs529211517 associates Disease nephrotic syndrome. Variant rs2060521579 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TBC1D8B. Variant rs1223251037 associates Disease nephrotic syndrome. Variant rs9269202 associates Disease nephrotic syndrome. Variant rs369558225 associates Disease nephrotic syndrome. Variant rs4979462 associates Disease nephrotic syndrome. Variant rs1569495819 associates Disease nephrotic syndrome. Variant rs886058679 associates Disease nephrotic syndrome. Variant rs570583897 associates Disease nephrotic syndrome. Variant rs886058682 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene WDR4. Disease nephrotic syndrome associates Gene RAG2. Disease nephrotic syndrome associates Gene CRB2. Variant rs886047492 associates Disease nephrotic syndrome. Variant rs370860586 associates Disease nephrotic syndrome. Variant rs886058680 associates Disease nephrotic syndrome. Variant rs121918232 associates Disease nephrotic syndrome. Variant rs1800492946 associates Disease nephrotic syndrome. Variant rs61747728 associates Disease nephrotic syndrome. Variant rs886058681 associates Disease nephrotic syndrome. Variant rs1601356283 associates Disease nephrotic syndrome. Variant rs527571090 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene GSN. Variant rs2045467851 associates Disease nephrotic syndrome. Variant rs199570781 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene NR0B1. Variant rs386833920 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TNFSF15. Disease nephrotic syndrome associates Gene CHD7. Variant rs281874721 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene TBX18. Variant rs145146218 associates Disease nephrotic syndrome. Variant rs114203578 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene RAG1. Disease nephrotic syndrome associates Gene C1QBP. Variant rs121434394 associates Disease nephrotic syndrome. Variant rs554480714 associates Disease nephrotic syndrome. Variant rs2068656107 associates Disease nephrotic syndrome. Variant rs2079386835 associates Disease nephrotic syndrome. Variant rs2045394381 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene PTPRO. Variant rs386833909 associates Disease nephrotic syndrome. Variant rs2066736944 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene DCLRE1C. Variant HLA-DQA1*01 associates Disease nephrotic syndrome. Variant HLA-DQA1*02:01 associates Disease nephrotic syndrome. Variant rs959473971 associates Disease nephrotic syndrome. Variant rs2016645859 associates Disease nephrotic syndrome. Variant rs386833947 associates Disease nephrotic syndrome. Variant rs374099285 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene SAA1. Variant rs1191455921 associates Disease nephrotic syndrome. Variant rs119473038 associates Disease nephrotic syndrome. Variant rs121912488 associates Disease nephrotic syndrome. Variant rs974891221 associates Disease nephrotic syndrome. Variant rs557010306 associates Disease nephrotic syndrome. Variant HLA-DQB1*03 associates Disease nephrotic syndrome. Variant rs138656762 associates Disease nephrotic syndrome. Variant rs369363545 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene FOXP3. Variant rs28366266 associates Disease nephrotic syndrome. Variant rs119473033 associates Disease nephrotic syndrome. Variant rs145976111 associates Disease nephrotic syndrome. Variant rs2858317 associates Disease nephrotic syndrome. Variant rs143284092 associates Disease nephrotic syndrome. Variant rs145473779 associates Disease nephrotic syndrome. Disease nephrotic syndrome associates Gene ANLN. Variant rs2051495579 associates Disease nephrotic syndrome. Variant rs1265889 associates Disease nephrotic syndrome. Gene MIR205 associates Disease rheumatic heart disease. Gene MIR3909 associates Disease rheumatic heart disease. Gene MIR1183 associates Disease rheumatic heart disease. Variant rs4494157 associates Disease rheumatic heart disease.. Gene MIR1299 associates Disease rheumatic heart disease. Variant rs10794501 associates Disease rheumatic heart disease. Disease rheumatic heart disease resembles Disease Wolff-Parkinson-White syndrome. Disease rheumatic heart disease resembles Disease Wissler-Fanconi syndrome. Disease ontology identifier of rheumatic heart disease is DOID:0050827. \\nQuestion: Out of the given list, which Gene is associated with nephrotic syndrome and rheumatic heart disease. Given list is: GSDMB, KALRN, SNTB1, HLA-DQB1, CRTC1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990135.149385}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd8900e7c515595e8415441d048bdccd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd8900e7c515595e8415441d048bdccd/output.pkl Binary files differnew file mode 100644 index 0000000..cb1e616 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd8900e7c515595e8415441d048bdccd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd9d2b2640019113990d406b3dba74e3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd9d2b2640019113990d406b3dba74e3/metadata.json new file mode 100644 index 0000000..d4122b0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd9d2b2640019113990d406b3dba74e3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5721817016601562, "input_args": {"instruction": "'Context: Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene ATM. Disease myeloproliferative neoplasm associates Gene TERT. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene JAK2. Disease myeloproliferative neoplasm associates Gene THPO.. Gene MIR15B associates Disease myeloproliferative neoplasm. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1102586 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Disease idiopathic pulmonary fibrosis associates Gene PTPN14. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs2013701 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene KIF15. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1232712 associates Disease idiopathic pulmonary fibrosis. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and idiopathic pulmonary fibrosis. Given list is: FBN1, TERT, DLEU7, IL2RA, PTK2B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047831.3437665}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd9d2b2640019113990d406b3dba74e3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd9d2b2640019113990d406b3dba74e3/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cd9d2b2640019113990d406b3dba74e3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdbfdfc50f95f9fae964709cd60e3c98/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdbfdfc50f95f9fae964709cd60e3c98/metadata.json new file mode 100644 index 0000000..0995c38 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdbfdfc50f95f9fae964709cd60e3c98/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6338286399841309, "input_args": {"instruction": "'Context: Disease lung carcinoma associates Gene PPP1R18. Disease lung carcinoma associates Gene POLR1H. Variant rs114601353 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Gene MIR383 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs577626090 associates Disease lung carcinoma. Disease lung carcinoma associates Gene BRCA2. Variant rs56113850 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs387906661 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs13201681 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs138488080 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs4488809 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs66759488 associates Disease lung carcinoma. Variant rs380286 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Disease lung carcinoma associates Gene RAD52. Variant rs121913286 associates Disease lung carcinoma. Variant rs147680653 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs11571833 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs2596500 associates Disease lung carcinoma. Variant rs501942 associates Disease lung carcinoma. Disease lung carcinoma associates Gene DDR1. Variant rs115100928 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Gene MIR570 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TP63.. Disease lung carcinoma associates Gene IRF4. Variant rs34832458 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs144433536 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs121913403 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs121913482 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs121913400 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs121913409 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs121913444 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs121913412 associates Disease lung adenocarcinoma. Variant rs121913273 associates Disease lung adenocarcinoma. Variant rs34968276 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene TERT. Variant rs56113850 associates Disease lung adenocarcinoma. Variant rs121913476 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs121913385 associates Disease lung adenocarcinoma. Variant rs121913499 associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Variant rs121913370 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs876659802 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs121913496 associates Disease lung adenocarcinoma. Disease lung adenocarcinoma associates Gene ACTR2. Variant rs121913338 associates Disease lung adenocarcinoma. Variant rs121913357 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs121913331 associates Disease lung adenocarcinoma. Variant rs380286 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs121913355 associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs876660807 associates Disease lung adenocarcinoma. Variant rs876659675 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs17038564 associates Disease lung adenocarcinoma. Variant rs121913279 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs138729528 associates Disease lung adenocarcinoma. Variant rs31489 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs121913351 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs587776805 associates Disease lung adenocarcinoma. Variant rs121913428 associates Disease lung adenocarcinoma. Variant rs11591710 associates Disease lung adenocarcinoma. Variant rs121917759 associates Disease lung adenocarcinoma. Variant rs2004038 associates Disease lung adenocarcinoma. Variant rs121913399 associates Disease lung adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and lung adenocarcinoma. Given list is: RP1, RBFOX1, TP53, PRKAG2, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048808.301445}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdbfdfc50f95f9fae964709cd60e3c98/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdbfdfc50f95f9fae964709cd60e3c98/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdbfdfc50f95f9fae964709cd60e3c98/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdee5e050b8a9705d45433f085396645/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdee5e050b8a9705d45433f085396645/metadata.json new file mode 100644 index 0000000..238612f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdee5e050b8a9705d45433f085396645/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7645988464355469, "input_args": {"instruction": "'Context: Variant rs985033810 associates Disease lung adenocarcinoma. Variant rs483352697 associates Disease lung adenocarcinoma. Variant rs967461896 associates Disease lung adenocarcinoma. Variant rs17851045 associates Disease lung adenocarcinoma. Variant rs377577594 associates Disease lung adenocarcinoma. Variant rs55768116 associates Disease lung adenocarcinoma. Variant rs587776805 associates Disease lung adenocarcinoma. Variant rs876660333 associates Disease lung adenocarcinoma. Variant rs942158624 associates Disease lung adenocarcinoma. Variant rs587781991 associates Disease lung adenocarcinoma. Variant rs80338963 associates Disease lung adenocarcinoma. Variant rs200595745 associates Disease lung adenocarcinoma. Variant rs863225281 associates Disease lung adenocarcinoma. Variant rs587781525 associates Disease lung adenocarcinoma. Variant rs876659802 associates Disease lung adenocarcinoma. Variant rs31489 associates Disease lung adenocarcinoma. Variant rs62560775 associates Disease lung adenocarcinoma. Variant rs876658468 associates Disease lung adenocarcinoma. Variant rs886039484 associates Disease lung adenocarcinoma. Variant rs2179920 associates Disease lung adenocarcinoma. Variant rs121913255 associates Disease lung adenocarcinoma. Variant rs121913281 associates Disease lung adenocarcinoma. Variant rs2293607 associates Disease lung adenocarcinoma. Variant rs863224451 associates Disease lung adenocarcinoma. Variant rs876660754 associates Disease lung adenocarcinoma. Variant rs121913275 associates Disease lung adenocarcinoma. Variant rs35201538 associates Disease lung adenocarcinoma. Variant rs121913495 associates Disease lung adenocarcinoma. Variant rs876659675 associates Disease lung adenocarcinoma. Variant rs3117582 associates Disease lung adenocarcinoma. Gene MIR551B associates Disease lung adenocarcinoma. Variant rs587782329 associates Disease lung adenocarcinoma. Variant rs876660807 associates Disease lung adenocarcinoma. Variant rs121913229 associates Disease lung adenocarcinoma. Variant rs121913254 associates Disease lung adenocarcinoma. Variant rs121434592 associates Disease lung adenocarcinoma. Variant rs121913361 associates Disease lung adenocarcinoma. Variant rs121913284 associates Disease lung adenocarcinoma. Variant rs121913529 associates Disease lung adenocarcinoma. Variant rs193920774 associates Disease lung adenocarcinoma. Variant rs121913228 associates Disease lung adenocarcinoma. Variant rs121913233 associates Disease lung adenocarcinoma. Variant rs121913530 associates Disease lung adenocarcinoma. Variant rs4236709 associates Disease lung adenocarcinoma. Variant rs80338796 associates Disease lung adenocarcinoma. Variant rs121913274 associates Disease lung adenocarcinoma. Variant rs121913315 associates Disease lung adenocarcinoma. Variant rs121913500 associates Disease lung adenocarcinoma. Variant rs121913355 associates Disease lung adenocarcinoma. Variant rs121912580 associates Disease lung adenocarcinoma. Variant rs375874539 associates Disease lung adenocarcinoma. Variant rs148924904 associates Disease lung adenocarcinoma. Variant rs11632038 associates Disease lung adenocarcinoma. Variant rs885518 associates Disease lung adenocarcinoma. Variant rs116506680 associates Disease lung adenocarcinoma. Variant rs121913343 associates Disease lung adenocarcinoma. Variant rs121434568 associates Disease lung adenocarcinoma. Variant rs121913279 associates Disease lung adenocarcinoma. Variant rs121913338 associates Disease lung adenocarcinoma. Variant rs55781567 associates Disease lung adenocarcinoma. Variant rs121913385 associates Disease lung adenocarcinoma. Variant rs17849781 associates Disease lung adenocarcinoma. Variant rs121913351 associates Disease lung adenocarcinoma. Variant rs121917759 associates Disease lung adenocarcinoma. Variant rs5879422 associates Disease lung adenocarcinoma. Variant rs121913469 associates Disease lung adenocarcinoma. Variant rs876660821 associates Disease lung adenocarcinoma. Variant rs587782289 associates Disease lung adenocarcinoma. Variant rs121913407 associates Disease lung adenocarcinoma. Variant rs587782664 associates Disease lung adenocarcinoma. Variant rs180177040 associates Disease lung adenocarcinoma. Gene MIR519D associates Disease lung adenocarcinoma. Gene MIR483 associates Disease lung adenocarcinoma. Variant rs121913413 associates Disease lung adenocarcinoma. Variant rs121913331 associates Disease lung adenocarcinoma. Disease estrogen-receptor negative breast cancer associates Gene ANKLE1. Variant rs16991615 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene ADCY9. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs616488 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Variant rs6569648 associates Disease estrogen-receptor negative breast cancer. Variant rs12710696 associates Disease estrogen-receptor negative breast cancer.. Disease estrogen-receptor negative breast cancer associates Gene RAD51B. Variant rs4849887 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs56345976 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with lung adenocarcinoma and estrogen-receptor negative breast cancer. Given list is: JRK, PLG, PNPLA3, TERT, IL23R'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048723.9886653}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdee5e050b8a9705d45433f085396645/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdee5e050b8a9705d45433f085396645/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cdee5e050b8a9705d45433f085396645/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce20e6240108699b207c0d96b515256f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce20e6240108699b207c0d96b515256f/metadata.json new file mode 100644 index 0000000..3e5eebd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce20e6240108699b207c0d96b515256f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5521945953369141, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cutaneous lupus erythematosus and immunoglobulin alpha deficiency. Given list is: DTNB, IL10, TNXB, FAM13A, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047936.8569252}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce20e6240108699b207c0d96b515256f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce20e6240108699b207c0d96b515256f/output.pkl Binary files differnew file mode 100644 index 0000000..ff3ac57 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce20e6240108699b207c0d96b515256f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce58553f422ad4d85d1a787d192784aa/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce58553f422ad4d85d1a787d192784aa/metadata.json new file mode 100644 index 0000000..de34f3b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce58553f422ad4d85d1a787d192784aa/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6531531810760498, "input_args": {"instruction": "'Context: Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TET2. Disease myeloproliferative neoplasm associates Gene TERT. Gene MIR433 associates Disease myeloproliferative neoplasm. Gene MIR143 associates Disease myeloproliferative neoplasm. Gene MIR126 associates Disease myeloproliferative neoplasm. Variant rs75061358 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene MMP23B. Variant rs4295627 associates Disease central nervous system cancer. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene TMEM106B. Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene BRD4. Variant rs55705857 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene PDGFB. Variant rs1412829 associates Disease central nervous system cancer. Variant rs35850753 associates Disease central nervous system cancer. Variant rs1920116 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene RUNX1. Disease central nervous system cancer associates Gene PRDM16. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene TUBB. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene PHOX2B. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene MSH6. Variant rs2157719 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Variant rs2853676 associates Disease central nervous system cancer. Variant rs1801591 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene MBD4. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene ZSWIM6. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene VPS16. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene PDGFRB. Disease central nervous system cancer associates Gene CHMP2B. Disease central nervous system cancer associates Gene ADAMTS3. Disease central nervous system cancer associates Gene KRAS. Variant rs12230172 associates Disease central nervous system cancer. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene MSH3. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene TREM2. Disease central nervous system cancer associates Gene VCP. Disease central nervous system cancer associates Gene EPHB2. Disease central nervous system cancer associates Gene CPLANE1. Disease central nervous system cancer associates Gene FLI1. Variant rs111696067 associates Disease central nervous system cancer. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM216. Disease central nervous system cancer associates Gene WT1. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene FGF8. Disease central nervous system cancer associates Gene CDKN1A. Variant rs2236507 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GLI2. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene ALX1. Disease central nervous system cancer associates Gene DMPK. Disease central nervous system cancer associates Gene CDKN1B. Variant rs4809324 associates Disease central nervous system cancer. Variant rs891835 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SLC25A11. Disease central nervous system cancer associates Gene PMS2. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and central nervous system cancer. Given list is: WNT4, TERT, VAV3, ADH1B, GATA3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047832.9959161}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce58553f422ad4d85d1a787d192784aa/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce58553f422ad4d85d1a787d192784aa/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce58553f422ad4d85d1a787d192784aa/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce7666930c565653623515a06403840d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce7666930c565653623515a06403840d/metadata.json new file mode 100644 index 0000000..f669936 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce7666930c565653623515a06403840d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.603308916091919, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with atopic asthma and autoimmune disease. Given list is: rs2447827, rs1937455, rs62324212, rs12205199, rs4482879'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049162.6778705}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce7666930c565653623515a06403840d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce7666930c565653623515a06403840d/output.pkl Binary files differnew file mode 100644 index 0000000..88f6b7e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ce7666930c565653623515a06403840d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cedb40a6ecc25ec98537c773344a5ce1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cedb40a6ecc25ec98537c773344a5ce1/metadata.json new file mode 100644 index 0000000..5929e06 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cedb40a6ecc25ec98537c773344a5ce1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7076208591461182, "input_args": {"instruction": "'Context: Disease squamous cell carcinoma associates Gene BRCA2. Disease squamous cell carcinoma associates Gene CYP1B1. Variant rs6059655 associates Disease squamous cell carcinoma. Variant rs12203592 associates Disease squamous cell carcinoma. Variant rs62246017 associates Disease squamous cell carcinoma. Variant rs35063026 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene CHEK2. Disease squamous cell carcinoma associates Gene GJB2. Variant rs149906873 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene BNC2. Disease squamous cell carcinoma associates Gene EPB41L1. Disease squamous cell carcinoma associates Gene HERC2. Disease squamous cell carcinoma associates Gene MMP1. Disease squamous cell carcinoma associates Gene ERCC2. Variant rs267598140 associates Disease squamous cell carcinoma. Gene MIR363 associates Disease squamous cell carcinoma. Variant rs121913230 associates Disease squamous cell carcinoma. Variant rs121913431 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene FOXP1. Disease squamous cell carcinoma associates Gene PPARGC1B. Variant rs10810657 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene LRFN2. Variant rs62209647 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene TNFRSF10B. Gene MIR485 associates Disease squamous cell carcinoma. Variant rs4268748 associates Disease squamous cell carcinoma. Gene MIR10B associates Disease squamous cell carcinoma. Variant rs4455710 associates Disease squamous cell carcinoma. Variant rs16891982 associates Disease squamous cell carcinoma. Variant rs11571833 associates Disease squamous cell carcinoma. Variant rs6791479 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene TP53. Variant rs1805007 associates Disease squamous cell carcinoma. Gene MIR193A associates Disease squamous cell carcinoma. Variant rs8063761 associates Disease squamous cell carcinoma. Variant rs13301660 associates Disease squamous cell carcinoma. Variant rs11707807 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene PTEN. Variant rs17879961 associates Disease squamous cell carcinoma. Gene MIR494 associates Disease squamous cell carcinoma. Variant rs35324266 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene PIK3CA. Disease squamous cell carcinoma associates Gene ERCC3. Disease squamous cell carcinoma associates Gene CDKN2A. Variant rs2494938 associates Disease squamous cell carcinoma. Variant rs9383064 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene XPA. Disease squamous cell carcinoma associates Gene ERCC4. Variant rs74664507 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene KRT5. Disease estrogen-receptor negative breast cancer associates Gene RAD51B. Disease estrogen-receptor negative breast cancer associates Gene BRCA2. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs143521471 associates Disease estrogen-receptor negative breast cancer. Variant rs2736108 associates Disease estrogen-receptor negative breast cancer. Variant rs1432679 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs56345976 associates Disease estrogen-receptor negative breast cancer. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Variant rs12662670 associates Disease estrogen-receptor negative breast cancer. Variant rs67397200 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TP53. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs11571833 associates Disease estrogen-receptor negative breast cancer. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene CCDC170. Variant rs6001930 associates Disease estrogen-receptor negative breast cancer. Variant rs6562760 associates Disease estrogen-receptor negative breast cancer. Variant rs616488 associates Disease estrogen-receptor negative breast cancer. Disease breast cancer associates Gene XRCC3. Variant rs12721593 associates Disease breast cancer. Variant rs56091799 associates Disease breast cancer. Variant rs539960851 associates Disease breast cancer. Variant rs886055599 associates Disease breast cancer. Variant rs59004709 associates Disease breast cancer. Variant rs59362219 associates Disease breast cancer. Variant rs57605939 associates Disease breast cancer. Variant rs587781593 associates Disease breast cancer. Variant rs200310662 associates Disease breast cancer. Disease breast cancer associates Gene XRCC2. Variant rs587780598 associates Disease breast cancer. Variant rs370359540 associates Disease breast cancer. Variant rs576081828 associates Disease breast cancer. Variant rs587781296 associates Disease breast cancer. Variant rs886053214 associates Disease breast cancer. Variant rs886053212 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs533802049 associates Disease breast cancer. Variant rs370968992 associates Disease breast cancer. Variant rs397507213 associates Disease breast cancer. Variant rs200297914 associates Disease breast cancer. Variant rs56328013 associates Disease breast cancer. Variant rs587781294 associates Disease breast cancer. Variant rs63750617 associates Disease breast cancer. Variant rs56076152 associates Disease breast cancer. Disease breast cancer associates Gene RAD51C. Variant rs1555281594 associates Disease breast cancer. Variant rs63750027 associates Disease breast cancer. Variant rs587781991 associates Disease breast cancer. Variant rs116735828 associates Disease breast cancer. Disease breast cancer associates Gene RAD51D. Variant rs1799950 associates Disease breast cancer. Variant rs1265352633 associates Disease breast cancer. Variant rs553975112 associates Disease breast cancer. Variant rs63750998 associates Disease breast cancer. Variant rs370976710 associates Disease breast cancer. Variant rs587781614 associates Disease breast cancer. Variant rs369408590 associates Disease breast cancer. Variant rs886037816 associates Disease breast cancer. Variant rs539613324 associates Disease breast cancer. Variant rs587780626 associates Disease breast cancer. Variant rs376257217 associates Disease breast cancer. Variant rs942158624 associates Disease breast cancer. Variant rs1267759029 associates Disease breast cancer. Variant rs61734354 associates Disease breast cancer. Variant rs2077952602 associates Disease breast cancer. Variant rs372966951 associates Disease breast cancer. Variant rs61755173 associates Disease breast cancer. Variant rs142455912 associates Disease breast cancer. \\nQuestion: Out of the given list, which Gene is associated with squamous cell carcinoma and estrogen-receptor negative breast cancer. Given list is: BRCA2, RBFOX1, UCK2, PNPLA3, RAD51B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990184.0184467}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cedb40a6ecc25ec98537c773344a5ce1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cedb40a6ecc25ec98537c773344a5ce1/output.pkl Binary files differnew file mode 100644 index 0000000..6634bf1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cedb40a6ecc25ec98537c773344a5ce1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf12d905c5976a1dffa4eb74f325bfb9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf12d905c5976a1dffa4eb74f325bfb9/metadata.json new file mode 100644 index 0000000..842f1ac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf12d905c5976a1dffa4eb74f325bfb9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7989306449890137, "input_args": {"instruction": "'Context: Disease Kuhnt-Junius degeneration associates Gene CFH. Disease Kuhnt-Junius degeneration associates Gene CFB. Disease Kuhnt-Junius degeneration associates Gene SLC44A4. Variant rs67538026 associates Disease Kuhnt-Junius degeneration. Variant rs35292876 associates Disease Kuhnt-Junius degeneration. Variant rs8135665 associates Disease Kuhnt-Junius degeneration. Variant rs570618 associates Disease Kuhnt-Junius degeneration. Variant rs5754227 associates Disease Kuhnt-Junius degeneration. Variant rs10490924 associates Disease Kuhnt-Junius degeneration. Variant rs61985136 associates Disease Kuhnt-Junius degeneration. Variant rs9564692 associates Disease Kuhnt-Junius degeneration. Variant rs10737680 associates Disease Kuhnt-Junius degeneration. Variant rs11884770 associates Disease Kuhnt-Junius degeneration. Variant rs61941274 associates Disease Kuhnt-Junius degeneration. Variant rs147859257 associates Disease Kuhnt-Junius degeneration. Variant rs28368872 associates Disease Kuhnt-Junius degeneration. Variant rs2303790 associates Disease Kuhnt-Junius degeneration. Variant rs61818925 associates Disease Kuhnt-Junius degeneration. Variant rs62358361 associates Disease Kuhnt-Junius degeneration. Disease age related macular degeneration associates Gene CFB. Disease age related macular degeneration associates Gene CFH. Disease age related macular degeneration associates Gene C2. Disease age related macular degeneration associates Gene FBLN5. Disease age related macular degeneration associates Gene CFHR4. Disease age related macular degeneration associates Gene CFI. Disease age related macular degeneration associates Gene CFHR1. Disease age related macular degeneration associates Gene CST3. Disease age related macular degeneration associates Gene CFHR3. Disease age related macular degeneration associates Gene ERCC6. Disease age related macular degeneration associates Gene CFHR5. Disease age related macular degeneration associates Gene COL8A1. Disease age related macular degeneration associates Gene TIMP3. Disease age related macular degeneration associates Gene C9. Disease age related macular degeneration associates Gene NOTCH4. Disease age related macular degeneration associates Gene FRK. Disease age related macular degeneration associates Gene ASPM. Disease age related macular degeneration associates Gene ABCA4. Disease age related macular degeneration associates Gene NT5DC1. Disease age related macular degeneration associates Gene F13B. Variant rs62642574 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene SYN3. Disease age related macular degeneration associates Gene TNFRSF10A. Disease age related macular degeneration associates Gene HERC2. Disease age related macular degeneration associates Gene C3. Disease age related macular degeneration associates Gene COL10A1. Disease age related macular degeneration associates Gene TGFBR1. Disease age related macular degeneration associates Gene RAD51B. Disease age related macular degeneration associates Gene LIPC. Disease age related macular degeneration associates Gene HTRA1. Disease age related macular degeneration associates Gene HMCN1. Disease age related macular degeneration associates Gene ALDH1A2. Disease age related macular degeneration associates Gene CETP. \\nQuestion: Out of the given list, which Gene is associated with Kuhnt-Junius degeneration and age related macular degeneration. Given list is: CFH, CACNA2D1, STAT4, LACC1, SFRP4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990004.8268807}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf12d905c5976a1dffa4eb74f325bfb9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf12d905c5976a1dffa4eb74f325bfb9/output.pkl Binary files differnew file mode 100644 index 0000000..8d7d05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf12d905c5976a1dffa4eb74f325bfb9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf1da790d621e1f3ea1a2da13dfcf120/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf1da790d621e1f3ea1a2da13dfcf120/metadata.json new file mode 100644 index 0000000..c8fd96e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf1da790d621e1f3ea1a2da13dfcf120/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5000171661376953, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and nephrotic syndrome. Given list is: IGF1R, HLA-DQB1, IL2RA, SLC17A4, EPDR1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989647.6263835}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf1da790d621e1f3ea1a2da13dfcf120/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf1da790d621e1f3ea1a2da13dfcf120/output.pkl Binary files differnew file mode 100644 index 0000000..dede9e7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf1da790d621e1f3ea1a2da13dfcf120/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf329be8c2402dc6757c64f0db18d88f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf329be8c2402dc6757c64f0db18d88f/metadata.json new file mode 100644 index 0000000..bd7e05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf329be8c2402dc6757c64f0db18d88f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6153669357299805, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with oral cavity cancer and nephrotic syndrome. Given list is: ARMS2, HLA-DQB1, LOXL1, HLA-B, ACOXL'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989766.166319}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf329be8c2402dc6757c64f0db18d88f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf329be8c2402dc6757c64f0db18d88f/output.pkl Binary files differnew file mode 100644 index 0000000..e5fded1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/cf329be8c2402dc6757c64f0db18d88f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0150a8e4f80aae9137c4563dff19c7b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0150a8e4f80aae9137c4563dff19c7b/metadata.json new file mode 100644 index 0000000..655279d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0150a8e4f80aae9137c4563dff19c7b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.555131196975708, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with urticaria and male breast cancer. Given list is: TGM2, TENM2, HLA-B, RAD51B, GSDMB'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048248.7155976}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0150a8e4f80aae9137c4563dff19c7b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0150a8e4f80aae9137c4563dff19c7b/output.pkl Binary files differnew file mode 100644 index 0000000..c236bd4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0150a8e4f80aae9137c4563dff19c7b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d031e25cf823b421ce0ae81d8458a48f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d031e25cf823b421ce0ae81d8458a48f/metadata.json new file mode 100644 index 0000000..a5ed6e4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d031e25cf823b421ce0ae81d8458a48f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8800907135009766, "input_args": {"instruction": "'Context: Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene TUBB. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene PTCH2. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRCA2. Variant rs4295627 associates Disease central nervous system cancer. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene PDGFB. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BRAF. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene IFNG. Variant rs8753 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene SMARCB1. Disease central nervous system cancer associates Gene BAP1. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene CCBE1. Disease central nervous system cancer associates Gene CHEK2. Variant rs12230172 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene VCP. Disease central nervous system cancer associates Gene GLI3. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GNAS. Disease central nervous system cancer associates Gene KIAA0753. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KRAS. Variant rs1920116 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GRN. Variant rs2157719 associates Disease central nervous system cancer. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene MBD4. Disease central nervous system cancer associates Gene GLI2. Disease central nervous system cancer associates Gene SMARCA4. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene FAM149B1. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene GPC4. Disease central nervous system cancer associates Gene CDKN1B. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene SMARCE1. Disease central nervous system cancer associates Gene RAF1. Disease central nervous system cancer associates Gene PDPN. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PDGFRB. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene BDNF. Disease central nervous system cancer associates Gene GPC3. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene POLR2A. Variant rs891835 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TSC2. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene TCTN3. Disease central nervous system cancer associates Gene NRAS. Disease central nervous system cancer associates Gene CPLANE1. Variant rs1801591 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CCM2. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene OFD1. Disease central nervous system cancer associates Gene ZSWIM6. Disease lung carcinoma associates Gene BTN3A1. Gene MIR133B associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Gene MIR106B associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CHRNB4. Variant rs142618987 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs13201681 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs13217620 associates Disease lung carcinoma. Gene MIR302B associates Disease lung carcinoma. Variant rs11571833 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs144943614 associates Disease lung carcinoma. Variant chr6:117780603 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Gene MIR328 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CHEK2. Variant rs116461399 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Gene MIR200C associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs139244745 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs3999544 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs144433536 associates Disease lung carcinoma. Gene MIR200B associates Disease lung carcinoma. Variant rs35952432 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Gene MIR200A associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TNXB. Variant rs121909071 associates Disease lung carcinoma. Variant rs13212562 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Gene MIR495 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Disease lung carcinoma associates Gene MTMR3. Variant rs9280949 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Gene MIR34C associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Gene MIR490 associates Disease lung carcinoma. Variant rs113488022 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs121913351 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Gene MIR34A associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Variant rs577372072 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and lung carcinoma. Given list is: MYBPC3, GCKR, STAT4, TERT, BTN2A1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048006.2295299}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d031e25cf823b421ce0ae81d8458a48f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d031e25cf823b421ce0ae81d8458a48f/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d031e25cf823b421ce0ae81d8458a48f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0483a32ef71d131605e3d8ad30ef428/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0483a32ef71d131605e3d8ad30ef428/metadata.json new file mode 100644 index 0000000..beae8aa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0483a32ef71d131605e3d8ad30ef428/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5799047946929932, "input_args": {"instruction": "\"Context: Disease Takayasu's arteritis associates Gene GPANK1. Disease Takayasu's arteritis associates Gene HLA-B. Disease Takayasu's arteritis associates Gene IL6. Variant rs28834970 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene RPS9. Disease Takayasu's arteritis associates Gene LY6G6F-LY6G6D. Variant rs58693904 associates Disease Takayasu's arteritis. Variant rs11666543 associates Disease Takayasu's arteritis. Variant rs2836883 associates Disease Takayasu's arteritis. Variant rs9540128 associates Disease Takayasu's arteritis. Variant rs12524487 associates Disease Takayasu's arteritis. Variant rs12524487\\xa0 associates Disease Takayasu's arteritis. Variant rs4817988 associates Disease Takayasu's arteritis. Variant rs62392216 associates Disease Takayasu's arteritis. Variant rs9262437 associates Disease Takayasu's arteritis. Variant rs9271066 associates Disease Takayasu's arteritis. Variant rs4817984 associates Disease Takayasu's arteritis. Variant rs2844678 associates Disease Takayasu's arteritis. Variant rs1383258 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene PRRC2A. Disease Takayasu's arteritis associates Gene PRRT4. Disease Takayasu's arteritis associates Gene PSORS1C1. Variant rs61444472 associates Disease Takayasu's arteritis. Variant rs113452171 associates Disease Takayasu's arteritis. Variant rs17133698 associates Disease Takayasu's arteritis. Variant rs45479291 associates Disease Takayasu's arteritis. Variant HLAB*5201 associates Disease Takayasu's arteritis. Variant rs117298325 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene KLHL33. Variant HLA-B*5201 associates Disease Takayasu's arteritis. Variant rs17193507 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene LY6G5B. Disease Takayasu's arteritis associates Gene LY6G5C. Variant rs76457959 associates Disease Takayasu's arteritis. Disease Takayasu's arteritis associates Gene RNF5. Disease Takayasu's arteritis associates Gene LY6G6F. Disease Takayasu's arteritis associates Gene HLA-DOB. Disease Takayasu's arteritis associates Gene TRIM40. Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-C. Disease psoriatic arthritis associates Gene TNXB. Disease psoriatic arthritis associates Gene TRAF3IP2. Disease psoriatic arthritis associates Gene TNIP1. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene POU5F1. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs12191877 associates Disease psoriatic arthritis.. Variant rs114212579 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene NOS2. Variant rs115145466 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TNFAIP3. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-DRB1. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs4921483 associates Disease psoriatic arthritis. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs4921482 associates Disease psoriatic arthritis. Variant rs115928623 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene SLC22A5. Variant rs33980500 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-F. Disease psoriatic arthritis associates Gene GABBR1. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs12188300 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL13. Variant rs28780111 associates Disease psoriatic arthritis. Variant rs13191343 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. \\nQuestion: Out of the given list, which Gene is associated with Takayasu's arteritis and psoriatic arthritis. Given list is: RELN, HLA-B, HLA-B, SNTB1, SCN1A\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989763.091871}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0483a32ef71d131605e3d8ad30ef428/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0483a32ef71d131605e3d8ad30ef428/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0483a32ef71d131605e3d8ad30ef428/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0649fa5fd5e90c1853338d8ef323ed6/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0649fa5fd5e90c1853338d8ef323ed6/metadata.json new file mode 100644 index 0000000..7e57df2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0649fa5fd5e90c1853338d8ef323ed6/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5711936950683594, "input_args": {"instruction": "'Context: Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene FOXP3. Disease membranous glomerulonephritis associates Gene TCF19. Variant rs1265159 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene NFKB1. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs9272729 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene JAK1. Variant rs9271573 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene GPANK1. Disease membranous glomerulonephritis associates Gene RNF5. Disease membranous glomerulonephritis associates Gene BTNL2. Variant rs3134945 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene PLA2R1. Disease membranous glomerulonephritis associates Gene EHMT2. Variant rs230540 associates Disease membranous glomerulonephritis.. Variant rs9405192 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene SLC7A7. Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease toxic megacolon. Disease collagenous colitis isa Disease microscopic colitis. \\nQuestion: Out of the given list, which Gene is associated with membranous glomerulonephritis and collagenous colitis. Given list is: HLA-DQA1, STAT4, ATXN2, GNE, RAD51B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989459.025216}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0649fa5fd5e90c1853338d8ef323ed6/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0649fa5fd5e90c1853338d8ef323ed6/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0649fa5fd5e90c1853338d8ef323ed6/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d078bd2f535fe50cdc6eb6608142b038/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d078bd2f535fe50cdc6eb6608142b038/metadata.json new file mode 100644 index 0000000..9786635 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d078bd2f535fe50cdc6eb6608142b038/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5204236507415771, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with sclerosing cholangitis and endometrial cancer. Given list is: FADS2, RP1, ATXN2, VRK2, PLA2G6'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047784.8369825}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d078bd2f535fe50cdc6eb6608142b038/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d078bd2f535fe50cdc6eb6608142b038/output.pkl Binary files differnew file mode 100644 index 0000000..b238b22 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d078bd2f535fe50cdc6eb6608142b038/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0f573b656c2f3f579f3414c0263b3a8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0f573b656c2f3f579f3414c0263b3a8/metadata.json new file mode 100644 index 0000000..67f128d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0f573b656c2f3f579f3414c0263b3a8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5240414142608643, "input_args": {"instruction": "'Context: Variant rs8034191 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Variant rs116260619 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs13191445 associates Disease lung carcinoma. Variant rs577626090 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs387906661 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs380286 associates Disease lung carcinoma. Variant rs13199649 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs138488080 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Variant rs760763801 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs8042374 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs139789464 associates Disease lung carcinoma. Variant rs113488022 associates Disease lung carcinoma. Variant rs11571833 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Variant rs80264589 associates Disease lung carcinoma. Disease lung carcinoma associates Gene HLA-DQA1. Variant rs144943614 associates Disease lung carcinoma. Variant rs144433536 associates Disease lung carcinoma. Variant rs41266839 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs377093637 associates Disease lung carcinoma. Variant rs121913530 associates Disease lung carcinoma. Variant rs139244745 associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Variant rs3131378 associates Disease lung carcinoma. Variant rs75932146 associates Disease lung carcinoma. Variant rs121913529 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs2736100 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Variant rs2304645 associates Disease idiopathic pulmonary fibrosis. Variant rs73606754 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs2609259 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs12610495 associates Disease idiopathic pulmonary fibrosis. Variant rs79684490 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs74614704 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TERT. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant rs2013701 associates Disease idiopathic pulmonary fibrosis. Variant rs112087793 associates Disease idiopathic pulmonary fibrosis. Variant rs62023891 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. \\nQuestion: Out of the given list, which Gene is associated with lung carcinoma and idiopathic pulmonary fibrosis. Given list is: PRKAG2, YLPM1, TERT, LOXL1, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050445.8052871}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0f573b656c2f3f579f3414c0263b3a8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0f573b656c2f3f579f3414c0263b3a8/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d0f573b656c2f3f579f3414c0263b3a8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d154cdb3262d042749f311bd0c0d7001/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d154cdb3262d042749f311bd0c0d7001/metadata.json new file mode 100644 index 0000000..38b17c5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d154cdb3262d042749f311bd0c0d7001/metadata.json @@ -0,0 +1 @@ +{"duration": 1.2396512031555176, "input_args": {"instruction": "'Context: Variant rs544276945 associates Disease vasculitis. Variant rs3743841 associates Disease vasculitis. Variant rs1555330577 associates Disease vasculitis. Disease vasculitis associates Gene CASP10. Disease vasculitis associates Gene HLA-B. Disease vasculitis associates Gene NFKBIL1. Disease vasculitis associates Gene NFKB1. Disease vasculitis associates Gene HLA-DPB1. Disease vasculitis associates Gene NFKB2. Disease vasculitis associates Gene TLR4. Disease vasculitis associates Gene HLA-DPA1. Disease vasculitis associates Gene SCN10A. Disease vasculitis associates Gene IL12B. Disease vasculitis associates Gene TNFRSF13B. Disease vasculitis associates Gene HLA-DRB1. Disease vasculitis associates Gene TNFSF12. Disease vasculitis associates Gene DNASE1L3. Disease vasculitis associates Gene IL10. Disease vasculitis associates Gene IL23R. Disease vasculitis associates Gene SCN9A. Disease vasculitis associates Gene KLRC4. Disease vasculitis associates Gene TNFRSF13C. Gene MIR383 associates Disease vasculitis. Disease vasculitis associates Gene PRKCD. Disease vasculitis associates Gene CTLA4. Disease vasculitis associates Gene CCR1. Disease vasculitis associates Gene CD244. Disease vasculitis associates Gene IL12RB1. Disease vasculitis associates Gene NLRP3. Disease vasculitis associates Gene P4HA2. Disease vasculitis associates Gene PNP. Disease vasculitis associates Gene WAS. Disease ontology identifier of vasculitis is DOID:865. Disease vasculitis associates Gene SCN11A. Disease vasculitis associates Gene SAA1. Disease vasculitis associates Gene IL12A. Disease vasculitis associates Gene UBAC2. Disease keratosis associates Gene SERPINB7. Disease keratosis associates Gene KRT9. Disease keratosis associates Gene KRT5. Disease keratosis associates Gene KRT1. Disease keratosis associates Gene AAGAB. Disease keratosis associates Gene TRPV3. Disease keratosis associates Gene KRT16. Disease ontology identifier of keratosis is DOID:161. Disease keratosis associates Gene GJB4. Disease keratosis associates Gene KRT14. Disease keratosis associates Gene MBTPS2. Disease keratosis associates Gene CTSC. Disease keratosis associates Gene TRPM4. Disease keratosis associates Gene KRT17. Disease keratosis associates Gene KRT83. Disease keratosis associates Gene KRT6B. Disease keratosis associates Gene KRT6A. Disease keratosis resembles Disease verrucous carcinoma. Disease keratosis associates Gene SMARCAD1. Disease keratosis presents Symptom Erythema. Disease keratosis associates Gene WNT10A. Disease keratosis associates Gene KRT6C. Disease keratosis associates Gene AQP5. Disease keratosis associates Gene GJB3. Disease keratosis associates Gene KDSR. Disease keratosis associates Gene CAST. Disease keratosis associates Gene RHBDF2. Disease epidermodysplasia verruciformis resembles Disease keratosis. Disease keratosis associates Gene ATP2A2. Disease keratosis associates Gene VPS33B. Disease keratosis associates Gene SNAP29. Disease keratosis associates Gene GJB2. Disease keratosis associates Gene PERP. Disease keratosis associates Gene JUP. Disease nonepidermolytic palmoplantar keratoderma resembles Disease keratosis. Disease keratosis resembles Disease acrodermatitis. Disease keratosis presents Symptom Purpura. Disease keratosis associates Gene SASH1. Disease keratosis associates Gene KANK2. Disease keratosis presents Symptom Skin Manifestations. Disease keratosis associates Gene TAT. Disease keratosis associates Gene GJA1. \\nQuestion: Out of the given list, which Variant is associated with anti-neutrophil antibody associated vasculitis and keratinocyte carcinoma\"@e. Given list is: rs2812378, rs17145188, rs12931267, rs6679677, rs12413409'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050484.6064034}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d154cdb3262d042749f311bd0c0d7001/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d154cdb3262d042749f311bd0c0d7001/output.pkl Binary files differnew file mode 100644 index 0000000..8d79a2d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d154cdb3262d042749f311bd0c0d7001/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1bfa61b6537ce22ce9829faf119d4fc/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1bfa61b6537ce22ce9829faf119d4fc/metadata.json new file mode 100644 index 0000000..ec905c1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1bfa61b6537ce22ce9829faf119d4fc/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6168556213378906, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with pulmonary hypertension and dermatomyositis. Given list is: CLPTM1L, C5, HLA-DPA1, AHR, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047887.9254544}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1bfa61b6537ce22ce9829faf119d4fc/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1bfa61b6537ce22ce9829faf119d4fc/output.pkl Binary files differnew file mode 100644 index 0000000..aa9950b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1bfa61b6537ce22ce9829faf119d4fc/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1fcefb9df6895e037a61273053e6d94/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1fcefb9df6895e037a61273053e6d94/metadata.json new file mode 100644 index 0000000..aea7267 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1fcefb9df6895e037a61273053e6d94/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4899749755859375, "input_args": {"instruction": "'Context: Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene RTEL1. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Disease idiopathic pulmonary fibrosis associates Gene TERT. Disease idiopathic pulmonary fibrosis associates Gene TINF2. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene NPRL3. Gene MIR155 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Disease idiopathic pulmonary fibrosis associates Gene ATP11A. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs10808505 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA2. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene FAM13A. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPC. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene IVD. Disease pulmonary fibrosis associates Gene NKX2-1. Disease pulmonary fibrosis associates Gene KIAA0319L. Gene MIR200C associates Disease pulmonary fibrosis. Disease pulmonary fibrosis associates Gene PRTN3. Disease pulmonary fibrosis associates Gene BTNL2. Disease pulmonary fibrosis associates Gene TP53. Disease pulmonary fibrosis associates Gene SLC6A14. Disease pulmonary fibrosis associates Gene ATP11A. Disease pulmonary fibrosis associates Gene STX1A. Disease pulmonary fibrosis isa Disease interstitial lung disease. Disease pulmonary fibrosis associates Gene POLR3H. Disease pulmonary fibrosis associates Gene RTEL1. Disease pulmonary fibrosis associates Gene IRF5. Disease pulmonary fibrosis associates Gene DCTN4. Disease pulmonary fibrosis associates Gene AP3B1. Gene MIR410 associates Disease pulmonary fibrosis. Disease pulmonary fibrosis associates Gene TERT. Gene MIR19A associates Disease pulmonary fibrosis. Gene MIR31 associates Disease pulmonary fibrosis. Disease pulmonary fibrosis associates Gene IL1RN. Variant rs200471459 associates Disease pulmonary fibrosis. Disease pulmonary fibrosis associates Gene TGFB1. Gene MIR449A associates Disease pulmonary fibrosis. Disease pulmonary fibrosis associates Gene SP110. Disease pulmonary fibrosis associates Gene NR5A1. Disease pulmonary fibrosis associates Gene SLC11A1. Gene MIR1343 associates Disease pulmonary fibrosis. Disease pulmonary fibrosis associates Gene HMOX1. Disease pulmonary fibrosis associates Gene PTPN22. Disease pulmonary fibrosis associates Gene TINF2. Disease interstitial lung disease associates Gene SFTPA1. Disease interstitial lung disease associates Gene TERT. Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene IRF5. Disease interstitial lung disease associates Gene SFTPA2. Disease interstitial lung disease associates Gene SFTPB. Disease interstitial lung disease associates Gene NKX2-1. Disease interstitial lung disease associates Gene SFTPC. Disease interstitial lung disease associates Gene TGFB1. Disease interstitial lung disease associates Gene ATP11A. Disease interstitial lung disease associates Gene FOXJ1. Variant rs116906005 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ZNFX1. Disease interstitial lung disease associates Gene BTNL2. Disease interstitial lung disease associates Gene FAM13A. Disease interstitial lung disease associates Gene CFTR. Disease interstitial lung disease associates Gene COL3A1. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene DNAAF11. Disease interstitial lung disease associates Gene STXBP2. Disease interstitial lung disease associates Gene AP3B1. Variant rs2034650 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene STX1A. Disease interstitial lung disease associates Gene HFE. Disease interstitial lung disease associates Gene FOXP3. Gene MIR200C associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SPEF2. Disease interstitial lung disease associates Gene EIF2AK4. Disease interstitial lung disease associates Gene PRTN3. Disease lung disease associates Gene ETFB. Disease lung disease associates Gene ECM1. Disease lung disease associates Gene FOXP1. Disease lung disease associates Gene PIEZO1. Disease lung disease associates Gene ITPR1. Disease lung disease associates Gene EIF2AK4. Disease lung disease associates Gene IRF2BP2. Disease lung disease associates Gene ETFDH. Disease lung disease associates Gene ANLN. Disease lung disease associates Gene FOXN1. Disease lung disease associates Gene FRA10AC1. Disease lung disease associates Gene NKX2-5. Disease lung disease associates Gene FKBP6. Disease lung disease associates Gene IVNS1ABP. Disease lung disease associates Gene FBN1. Disease lung disease associates Gene PIEZO2. Disease lung disease associates Gene NKX2-6. Disease lung disease associates Gene TAFAZZIN. Disease lung disease associates Gene COL6A3. Disease lung disease associates Gene COL6A1. Disease lung disease associates Gene FBLN5. Disease lung disease associates Gene TNRC6B. Disease lung disease associates Gene SF3B2. Disease lung disease associates Gene SPTBN4. Disease lung disease associates Gene FOXF1. Disease lung disease associates Gene KIAA0319L. Disease lung disease associates Gene GATA1. Disease lung disease associates Gene COL2A1. Disease lung disease associates Gene MEFV. Disease lung disease associates Gene GATA6. Disease pulmonary venoocclusive disease associates Gene EIF2AK4. Disease pulmonary venoocclusive disease associates Gene BMPR2. Disease ontology identifier of pulmonary venoocclusive disease is DOID:5453. Disease pulmonary venoocclusive disease 1 isa Disease pulmonary venoocclusive disease. Compound Bosentan contraindicates Disease pulmonary venoocclusive disease. Compound Ambrisentan contraindicates Disease pulmonary venoocclusive disease. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and idiopathic pulmonary fibrosis. Given list is: ATXN2, ERAP1, RBFOX1, NANOS1, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988544.9841774}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1fcefb9df6895e037a61273053e6d94/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1fcefb9df6895e037a61273053e6d94/output.pkl Binary files differnew file mode 100644 index 0000000..4451ef9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d1fcefb9df6895e037a61273053e6d94/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d218c3ae8b5c1810082c55089cc99dd7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d218c3ae8b5c1810082c55089cc99dd7/metadata.json new file mode 100644 index 0000000..a75e13e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d218c3ae8b5c1810082c55089cc99dd7/metadata.json @@ -0,0 +1 @@ +{"duration": 1.189249038696289, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease lymphocytic colitis. Disease collagenous colitis isa Disease microscopic colitis. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Variant rs1233491 associates Disease cutaneous lupus erythematosus. Variant rs3130564 associates Disease cutaneous lupus erythematosus. \\nQuestion: Out of the given list, which Variant is associated with collagenous colitis and cutaneous lupus erythematosus. Given list is: rs2187668, rs975730, rs17398575, rs229527, rs1537377'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048927.6605551}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d218c3ae8b5c1810082c55089cc99dd7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d218c3ae8b5c1810082c55089cc99dd7/output.pkl Binary files differnew file mode 100644 index 0000000..44af7bb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d218c3ae8b5c1810082c55089cc99dd7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2bcd122751764354a1440d1f43604fd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2bcd122751764354a1440d1f43604fd/metadata.json new file mode 100644 index 0000000..9ff9ad3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2bcd122751764354a1440d1f43604fd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5217206478118896, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and oropharynx cancer. Given list is: EYA2, LOXL1, BTBD9, TMEM71, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989646.4174457}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2bcd122751764354a1440d1f43604fd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2bcd122751764354a1440d1f43604fd/output.pkl Binary files differnew file mode 100644 index 0000000..285488d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2bcd122751764354a1440d1f43604fd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2e6ea8f0723d9f880a25e2b982cdcd5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2e6ea8f0723d9f880a25e2b982cdcd5/metadata.json new file mode 100644 index 0000000..2f34129 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2e6ea8f0723d9f880a25e2b982cdcd5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.587583065032959, "input_args": {"instruction": "'Context: Variant rs1557219 associates Disease opiate dependence. Disease opiate dependence associates Gene GABRG1. Variant rs201123820 associates Disease opiate dependence. Variant rs12442183 associates Disease opiate dependence. Variant rs2366929 associates Disease opiate dependence. Disease opiate dependence associates Gene DRD2. Disease opiate dependence associates Gene DRD4. Variant rs2460187 associates Disease opiate dependence. Variant rs1970606 associates Disease opiate dependence. Variant rs2460186 associates Disease opiate dependence. Disease opiate dependence associates Gene ADGRV1. Variant rs2030272 associates Disease opiate dependence. Disease opiate dependence associates Gene CYP2B6. Disease opiate dependence associates Gene COMT. Variant rs10799590 associates Disease opiate dependence. Disease opiate dependence associates Gene BDNF. Variant rs2443067 associates Disease opiate dependence. Variant rs2443066 associates Disease opiate dependence. Variant rs2222243 associates Disease opiate dependence. Variant rs2443065 associates Disease opiate dependence. Variant rs2443064 associates Disease opiate dependence. Gene MIR125B2 associates Disease lung small cell carcinoma. Variant rs116427960 associates Disease lung small cell carcinoma. Variant rs587782329 associates Disease lung small cell carcinoma. Variant rs11540652 associates Disease lung small cell carcinoma. Variant rs530941076 associates Disease lung small cell carcinoma. Disease lung small cell carcinoma associates Gene NSD1. Gene MIR125B1 associates Disease lung small cell carcinoma. Variant rs55853698 associates Disease lung small cell carcinoma. Gene MIR155 associates Disease lung small cell carcinoma. Variant rs587782082 associates Disease lung small cell carcinoma. Gene MIR29B2 associates Disease lung small cell carcinoma. Gene MIR143 associates Disease lung small cell carcinoma. Variant rs985033810 associates Disease lung small cell carcinoma. Gene MIR29B1 associates Disease lung small cell carcinoma. Variant rs876660821 associates Disease lung small cell carcinoma. Variant rs11571833 associates Disease lung small cell carcinoma. Variant rs483352697 associates Disease lung small cell carcinoma. Variant rs876660754 associates Disease lung small cell carcinoma. Variant rs148924904 associates Disease lung small cell carcinoma. Variant rs1057519985 associates Disease lung small cell carcinoma. Variant rs864622237 associates Disease lung small cell carcinoma. Variant rs121913295 associates Disease lung small cell carcinoma. Variant rs876658468 associates Disease lung small cell carcinoma. Variant rs1057519989 associates Disease lung small cell carcinoma. Gene MIR125A associates Disease lung small cell carcinoma. Variant rs121913274 associates Disease lung small cell carcinoma. Variant rs121913275 associates Disease lung small cell carcinoma. Variant rs1057520006 associates Disease lung small cell carcinoma. Variant rs886039484 associates Disease lung small cell carcinoma. Gene MIR324 associates Disease lung small cell carcinoma. Variant rs1057520003 associates Disease lung small cell carcinoma. Variant rs1057520005 associates Disease lung small cell carcinoma. Variant rs1057520001 associates Disease lung small cell carcinoma. Gene MIR126 associates Disease lung small cell carcinoma. Gene MIR145 associates Disease lung small cell carcinoma. Variant rs28934576 associates Disease lung small cell carcinoma. Variant rs121913297 associates Disease lung small cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with opiate dependence and lung small cell carcinoma. Given list is: IL23R, HLA-DQB2, ADGRV1, DLEU7, RBFOX1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048007.8075452}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2e6ea8f0723d9f880a25e2b982cdcd5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2e6ea8f0723d9f880a25e2b982cdcd5/output.pkl Binary files differnew file mode 100644 index 0000000..62f6e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d2e6ea8f0723d9f880a25e2b982cdcd5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d491809387045a121e514db99c0f289f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d491809387045a121e514db99c0f289f/metadata.json new file mode 100644 index 0000000..fd2cc44 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d491809387045a121e514db99c0f289f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.727241039276123, "input_args": {"instruction": "'Context: Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene TNFRSF8. Disease allergic rhinitis associates Gene TNFSF4. Disease allergic rhinitis associates Gene TNFRSF11A. Variant rs2961920 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene PTPRK. Disease allergic rhinitis associates Gene IL2RA. Variant rs28407950 associates Disease allergic rhinitis. Variant rs138050288 associates Disease allergic rhinitis. Variant rs9297768 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFAIP8. Variant rs28690449 associates Disease allergic rhinitis. Variant rs9276796 associates Disease allergic rhinitis. Variant rs9272545 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DQB1. Variant rs9271701 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Variant rs63406760 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Variant rs17294280 associates Disease allergic rhinitis. Variant rs6738825 associates Disease allergic rhinitis. Variant rs34004019 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DPB1. Variant rs12623041 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Variant rs61977073 associates Disease allergic rhinitis. Variant rs9290877 associates Disease allergic rhinitis. Variant rs61839660 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene INPP5D. Variant rs61907713 associates Disease allergic rhinitis. Variant rs9687749 associates Disease allergic rhinitis. Variant rs1438673 associates Disease allergic rhinitis.. Variant rs16858573 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Variant rs9442514 associates Disease allergic rhinitis. Variant rs2164068 associates Disease allergic rhinitis. Variant rs6479828 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Variant rs34290285 associates Disease allergic rhinitis. Variant rs12887759 associates Disease allergic rhinitis. Variant rs9276643 associates Disease allergic rhinitis. Variant rs1689510 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1RL1. Variant rs61192126 associates Disease allergic rhinitis. Variant rs4845604 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs891058 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Variant rs11169225 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene NFKB1. Variant rs3793079 associates Disease allergic rhinitis. Variant rs6021268 associates Disease allergic rhinitis. Variant rs2621363 associates Disease allergic rhinitis. Variant rs12784963 associates Disease allergic rhinitis. Variant rs12365699 associates Disease allergic rhinitis. Variant rs1140310 associates Disease allergic rhinitis. Variant rs4722758 associates Disease allergic rhinitis. Variant rs9494883 associates Disease allergic rhinitis. Variant rs9282864 associates Disease allergic rhinitis. Variant rs12122629 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Variant rs4381563 associates Disease allergic rhinitis. Variant rs9273373 associates Disease allergic rhinitis. Variant rs45599938 associates Disease allergic rhinitis. Variant rs380852 associates Disease allergic rhinitis. Variant rs13166760 associates Disease allergic rhinitis. Variant rs12343737 associates Disease allergic rhinitis. Disease psoriatic arthritis associates Gene HLA-B. Disease psoriatic arthritis associates Gene HLA-F. Variant rs4921482 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene HLA-DRB1. Variant rs4921483 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene PPP1R10. Variant rs115928623 associates Disease psoriatic arthritis. Variant rs116805908 associates Disease psoriatic arthritis. Variant rs12191877 associates Disease psoriatic arthritis.. Disease psoriatic arthritis associates Gene IL12B. Variant rs13199524 associates Disease psoriatic arthritis. Variant rs149997688 associates Disease psoriatic arthritis. Variant rs12044149 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL13. Disease psoriatic arthritis associates Gene HLA-C. Variant rs115872194 associates Disease psoriatic arthritis. Variant rs114598684 associates Disease psoriatic arthritis. Variant rs115145466 associates Disease psoriatic arthritis. Variant rs114212579 associates Disease psoriatic arthritis. Variant rs114757170 associates Disease psoriatic arthritis. Variant rs10865331 associates Disease psoriatic arthritis. Variant rs116340302 associates Disease psoriatic arthritis. Variant rs1610601 associates Disease psoriatic arthritis. Variant rs115618145 associates Disease psoriatic arthritis. Variant rs115429782 associates Disease psoriatic arthritis. Variant rs13190932 associates Disease psoriatic arthritis. Variant rs2621322 associates Disease psoriatic arthritis. Variant rs115529844 associates Disease psoriatic arthritis. Variant rs115429849 associates Disease psoriatic arthritis. Variant rs458017 associates Disease psoriatic arthritis. Variant rs114383947 associates Disease psoriatic arthritis. Variant rs115645848 associates Disease psoriatic arthritis. Variant rs12188300 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene IL23R. Gene MIR424 associates Disease psoriatic arthritis. Variant rs115112280 associates Disease psoriatic arthritis. Variant rs33980500 associates Disease psoriatic arthritis. Disease psoriatic arthritis associates Gene TYK2. Disease psoriatic arthritis associates Gene C1orf141. \\nQuestion: Out of the given list, which Gene is associated with allergic rhinitis and psoriatic arthritis. Given list is: HLA-B, FAM227B, RP1, FTO, KIF1B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048295.995646}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d491809387045a121e514db99c0f289f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d491809387045a121e514db99c0f289f/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d491809387045a121e514db99c0f289f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a15bb6d48d0eae4658fdbe7d8d2aa9/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a15bb6d48d0eae4658fdbe7d8d2aa9/metadata.json new file mode 100644 index 0000000..e817365 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a15bb6d48d0eae4658fdbe7d8d2aa9/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7033710479736328, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with non-alcoholic fatty liver disease and non-alcoholic steatohepatitis. Given list is: C5AR1, PNPLA3, ABCG2, BTC, UMPS'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047690.3466225}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a15bb6d48d0eae4658fdbe7d8d2aa9/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a15bb6d48d0eae4658fdbe7d8d2aa9/output.pkl Binary files differnew file mode 100644 index 0000000..6d20314 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a15bb6d48d0eae4658fdbe7d8d2aa9/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a767d305ca11bbea6b4cf039dff730/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a767d305ca11bbea6b4cf039dff730/metadata.json new file mode 100644 index 0000000..488485c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a767d305ca11bbea6b4cf039dff730/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7991509437561035, "input_args": {"instruction": "'Context: Variant rs116481522 associates Disease breast cancer. Variant rs1480250917 associates Disease breast cancer. Variant rs151198586 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Variant rs4986854 associates Disease breast cancer. Variant rs1328985852 associates Disease breast cancer. Variant rs864622613 associates Disease breast cancer. Variant rs151327241 associates Disease breast cancer. Variant rs28897759 associates Disease breast cancer. Variant rs968150359 associates Disease breast cancer. Variant rs369561166 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs28897755 associates Disease breast cancer. Variant rs528541334 associates Disease breast cancer. Variant rs62625298 associates Disease breast cancer. Variant rs864622691 associates Disease breast cancer. Variant rs28897716 associates Disease breast cancer. Variant rs81002867 associates Disease breast cancer. Variant rs28897710 associates Disease breast cancer. Variant rs1481419710 associates Disease breast cancer. Variant rs4986860 associates Disease breast cancer. Variant rs967461896 associates Disease breast cancer. Variant rs28897715 associates Disease breast cancer. Variant rs1399574459 associates Disease breast cancer. Variant rs151316635 associates Disease breast cancer. Variant rs28897753 associates Disease breast cancer. Variant rs41295280 associates Disease breast cancer. Variant rs1801025 associates Disease breast cancer. Variant rs876658951 associates Disease breast cancer. Variant rs142813526 associates Disease breast cancer. Variant rs150651961 associates Disease breast cancer. Variant rs199954262 associates Disease breast cancer. Variant rs148061139 associates Disease breast cancer. Variant rs202072866 associates Disease breast cancer. Variant rs202208861 associates Disease breast cancer. Variant rs9282859 associates Disease breast cancer. Variant rs148924904 associates Disease breast cancer. Variant rs539960851 associates Disease breast cancer. Variant rs11571769 associates Disease breast cancer. Gene HLA-DQB2 marker Disease breast cancer. Variant rs1135401868 associates Disease breast cancer. Variant rs149402012 associates Disease breast cancer. Variant rs148690585 associates Disease breast cancer. Variant rs3026268 associates Disease breast cancer. Variant rs866521873 associates Disease breast cancer. Variant rs28897717 associates Disease breast cancer. Variant rs41286298 associates Disease breast cancer. Variant rs864622260 associates Disease breast cancer. Variant rs150269172 associates Disease breast cancer. Variant rs1555285984 associates Disease breast cancer. Variant rs864622398 associates Disease breast cancer. Variant rs28897706 associates Disease breast cancer. Variant rs202022822 associates Disease breast cancer. Variant rs41293521 associates Disease breast cancer. Variant rs115418995 associates Disease breast cancer. Variant rs8176316 associates Disease breast cancer. Variant rs1267759029 associates Disease breast cancer. Variant rs200310662 associates Disease breast cancer. Variant rs200640585 associates Disease breast cancer. Variant rs116735828 associates Disease breast cancer. Variant rs1555286298 associates Disease breast cancer. Variant rs761298847 associates Disease breast cancer. Variant rs81002827 associates Disease breast cancer. Variant rs116542018 associates Disease breast cancer. Variant rs61748181 associates Disease breast cancer. Variant rs1135401859 associates Disease breast cancer. Variant rs28897700 associates Disease breast cancer. Variant rs4986845 associates Disease breast cancer. Variant rs145551486 associates Disease breast cancer. Variant rs1966865214 associates Disease breast cancer. Variant rs28897705 associates Disease breast cancer. Variant rs1801023 associates Disease breast cancer. Variant rs81002899 associates Disease breast cancer. Variant rs976841328 associates Disease breast cancer. Variant rs564652222 associates Disease breast cancer. Variant rs1057519752 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene JAK2. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene SH2B3. Disease myeloproliferative neoplasm associates Gene ATM. Disease myeloproliferative neoplasm associates Gene TET2. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and myeloproliferative neoplasm. Given list is: TERT, HLA-DQB2, BRCA2, GNE, STAT3'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048067.2531571}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a767d305ca11bbea6b4cf039dff730/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a767d305ca11bbea6b4cf039dff730/output.pkl Binary files differnew file mode 100644 index 0000000..6e5e40b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5a767d305ca11bbea6b4cf039dff730/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5ed70bdb2c039a3c544bf85de5dd2e7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5ed70bdb2c039a3c544bf85de5dd2e7/metadata.json new file mode 100644 index 0000000..cf6aed0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5ed70bdb2c039a3c544bf85de5dd2e7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4872448444366455, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with autoimmune hepatitis and collagenous colitis. Given list is: rs17398575, rs1975197, rs2187668, rs6444305, rs2230199'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048873.1496887}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5ed70bdb2c039a3c544bf85de5dd2e7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5ed70bdb2c039a3c544bf85de5dd2e7/output.pkl Binary files differnew file mode 100644 index 0000000..14b0d19 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d5ed70bdb2c039a3c544bf85de5dd2e7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d76d2622a1e4a338b2cd7a2c1693e5eb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d76d2622a1e4a338b2cd7a2c1693e5eb/metadata.json new file mode 100644 index 0000000..a3823a9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d76d2622a1e4a338b2cd7a2c1693e5eb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6774694919586182, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and herpes zoster. Given list is: SNCA, CDKAL1, HLA-DQA1, HLA-B, RBFOX1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048303.7611132}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d76d2622a1e4a338b2cd7a2c1693e5eb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d76d2622a1e4a338b2cd7a2c1693e5eb/output.pkl Binary files differnew file mode 100644 index 0000000..720edd1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d76d2622a1e4a338b2cd7a2c1693e5eb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d79010cccb3dbf6c3c1b549bde4ad261/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d79010cccb3dbf6c3c1b549bde4ad261/metadata.json new file mode 100644 index 0000000..792b54d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d79010cccb3dbf6c3c1b549bde4ad261/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5375289916992188, "input_args": {"instruction": "'Context: Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2363956 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs4975616 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs895139219 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs1057519719 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs66759488 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs1057520037 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs66488313 associates Disease lung carcinoma. Variant rs397516895 associates Disease lung carcinoma. Variant rs121913286 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs921852102 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs549219764 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs397507466 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs121434569 associates Disease lung carcinoma. Variant rs387906660 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs397517138 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs397517128 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs4946256 associates Disease lung carcinoma. Variant rs36600 associates Disease lung carcinoma. Variant rs387906661 associates Disease lung carcinoma. Variant rs31489 associates Disease lung carcinoma. Variant rs121913351 associates Disease lung carcinoma. Variant rs121913355 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs114828403 associates Disease lung carcinoma. Variant rs6881773 associates Disease lung carcinoma. Variant rs121913369 associates Disease lung carcinoma. Variant rs1051730 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs144943614 associates Disease lung carcinoma. Variant rs116295105 associates Disease lung carcinoma. Variant rs61655864 associates Disease lung carcinoma. Variant rs374787445 associates Disease lung carcinoma. Variant rs121434568 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs1800566 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Gene MIR616 associates Disease lung carcinoma. Variant rs375919121 associates Disease lung carcinoma. Variant rs577626090 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs148934350 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and lung carcinoma. Given list is: PTPN22, C5, TERT, FCGR2A, FADS2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989525.0870876}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d79010cccb3dbf6c3c1b549bde4ad261/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d79010cccb3dbf6c3c1b549bde4ad261/output.pkl Binary files differnew file mode 100644 index 0000000..939fff2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d79010cccb3dbf6c3c1b549bde4ad261/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d7be535ecfab264b56e0141014feaa6e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d7be535ecfab264b56e0141014feaa6e/metadata.json new file mode 100644 index 0000000..f455574 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d7be535ecfab264b56e0141014feaa6e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.463010311126709, "input_args": {"instruction": "'Context: Variant rs505922 associates Disease duodenal ulcer. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene CDKN1A. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene PLG. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene EP300. Disease ontology identifier of duodenal ulcer is DOID:1724. Disease duodenal ulcer isa Disease peptic ulcer disease. Disease duodenal ulcer presents Symptom Asthenia. Disease duodenal ulcer presents Symptom Diarrhea. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer presents Symptom Pain. Disease duodenal ulcer presents Symptom Hematemesis. Variant rs9581957 associates Disease peptic ulcer disease. Variant rs78459074 associates Disease peptic ulcer disease. Variant rs34074411 associates Disease peptic ulcer disease. Variant rs2976388 associates Disease peptic ulcer disease. Variant rs10500661 associates Disease peptic ulcer disease. Variant rs147048677 associates Disease peptic ulcer disease. Disease peptic ulcer disease associates Gene SLCO2A1. Variant rs687621 associates Disease peptic ulcer disease. Disease peptic ulcer disease associates Gene GTF2IRD1. Disease peptic ulcer disease associates Gene GTF2IRD2. Disease peptic ulcer disease associates Gene HPGD. Disease peptic ulcer disease associates Gene GNA11. Disease peptic ulcer disease associates Gene PLA2G4A. Disease peptic ulcer disease associates Gene BCL7B. Disease peptic ulcer disease associates Gene FKBP6. Disease peptic ulcer disease associates Gene CDKN1A. Disease peptic ulcer disease associates Gene GBA1. Variant rs681343 associates Disease peptic ulcer disease. Disease peptic ulcer disease associates Gene LAT2. Disease peptic ulcer disease associates Gene TET2. Disease peptic ulcer disease associates Gene CDKN1B. Disease peptic ulcer disease associates Gene METTL27. Disease peptic ulcer disease associates Gene GTF2I. Disease peptic ulcer disease associates Gene CDKN2C. Disease peptic ulcer disease associates Gene STX1A. Disease peptic ulcer disease associates Gene CDKN2B. Disease peptic ulcer disease associates Gene MEN1. Disease peptic ulcer disease associates Gene WFS1. Disease peptic ulcer disease associates Gene CLDN3. Disease peptic ulcer disease associates Gene CISD2. Disease ontology identifier of active peptic ulcer disease is DOID:749. Variant rs35464379 associates Disease gastric ulcer. Variant rs1047781 associates Disease gastric ulcer.. Variant rs2976397 associates Disease gastric ulcer. Variant rs1205531 associates Disease gastric ulcer. Variant rs371481926 associates Disease gastric ulcer. Variant rs782672239 associates Disease gastric ulcer. Disease gastric ulcer associates Gene GBA1. Disease gastric ulcer associates Gene PLA2G4A. Disease gastric ulcer associates Gene FUT2. Disease gastric ulcer associates Gene CISD2. Disease gastric ulcer associates Gene WFS1. Disease gastric ulcer associates Gene MYO9B. Disease gastric ulcer associates Gene ARID1B. Compound (4R,4aR,7aR,12bS)-9-methoxy-3-methyl-1,2,4,4a,5,6,7a,13-octahydro-4,12-methanobenzofuro[3,2-e]isoquinolin-7-one;2,3-dihydroxybutanedioic acid;dihydrate contraindicates Disease gastric ulcer. Disease ontology identifier of gastric ulcer is DOID:10808. Compound Dextromethorphan contraindicates Disease gastric ulcer. Compound (R)-3-(1-Hydroxy-2-(methylamino)ethyl)phenol 2,3-dihydroxysuccinate contraindicates Disease gastric ulcer. Disease gastric ulcer presents Symptom Dyspepsia. Compound 4-Aminosalicylic acid contraindicates Disease gastric ulcer. Disease gastric ulcer isa Disease peptic ulcer disease. Compound Dicyclomine contraindicates Disease gastric ulcer. Compound Methotrexate contraindicates Disease gastric ulcer. Disease gastric ulcer presents Symptom Hematemesis. Disease gastric ulcer presents Symptom Gastroparesis. Compound Dexchlorpheniramine contraindicates Disease gastric ulcer. Disease gastric ulcer localizes Anatomy abomasum. Disease gastric ulcer presents Symptom Edema. Compound Carbinoxamine contraindicates Disease gastric ulcer. Disease gastric ulcer presents Symptom Hypothermia. Disease gastric ulcer presents Symptom Asthenia. Disease duodenum cancer associates Gene MSH2. Disease duodenum cancer associates Gene GREM1. Disease duodenum cancer associates Gene BMPR1A. Disease duodenum cancer associates Gene MLH1. Disease duodenum cancer associates Gene NTHL1. Disease duodenum cancer associates Gene APC. Disease duodenum cancer associates Gene SMAD4. Disease ontology identifier of duodenum cancer is DOID:10021. Disease duodenum cancer presents Symptom Hematemesis. Disease duodenum cancer presents Symptom Dyspepsia. Disease duodenum cancer resembles Disease Peutz-Jeghers syndrome. Disease duodenum cancer presents Symptom Abdominal Pain. Disease duodenum cancer presents Symptom Diarrhea. Disease duodenum cancer resembles Disease intestinal perforation. Disease duodenum cancer presents Symptom Nausea. Disease duodenum cancer resembles Disease gastric outlet obstruction. Disease duodenum cancer resembles Disease plasmacytoma. Disease duodenum cancer resembles Disease Lynch syndrome. Disease duodenum cancer presents Symptom Vomiting. Disease duodenum cancer isa Disease duodenum disease. Disease duodenum cancer presents Symptom Abdomen, Acute. Disease multiple endocrine neoplasia type 1 resembles Disease duodenum cancer. Disease familial adenomatous polyposis resembles Disease duodenum cancer. \\nQuestion: Out of the given list, which Gene is associated with malaria and duodenal ulcer. Given list is: TP53, ABO, HLA-DPA1, ADGRV1, GNE'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989464.3694346}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d7be535ecfab264b56e0141014feaa6e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d7be535ecfab264b56e0141014feaa6e/output.pkl Binary files differnew file mode 100644 index 0000000..d1c04d1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d7be535ecfab264b56e0141014feaa6e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8cee2a6458b6adf09da4bbe7aa1dbc8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8cee2a6458b6adf09da4bbe7aa1dbc8/metadata.json new file mode 100644 index 0000000..bbd9314 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8cee2a6458b6adf09da4bbe7aa1dbc8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4256103038787842, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with membranous glomerulonephritis and autoimmune hepatitis. Given list is: RBFOX1, RORA, IL2RA, BTC, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988423.8242211}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8cee2a6458b6adf09da4bbe7aa1dbc8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8cee2a6458b6adf09da4bbe7aa1dbc8/output.pkl Binary files differnew file mode 100644 index 0000000..03e1429 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8cee2a6458b6adf09da4bbe7aa1dbc8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8e85548a540146e9a91ee00b6fb1b43/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8e85548a540146e9a91ee00b6fb1b43/metadata.json new file mode 100644 index 0000000..929bd74 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8e85548a540146e9a91ee00b6fb1b43/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6462793350219727, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and interstitial lung disease. Given list is: FAM227B, PTPN22, PSCA, ABO, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048009.961821}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8e85548a540146e9a91ee00b6fb1b43/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8e85548a540146e9a91ee00b6fb1b43/output.pkl Binary files differnew file mode 100644 index 0000000..4e8488a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d8e85548a540146e9a91ee00b6fb1b43/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d90add055721f1bb858b141666ed5fec/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d90add055721f1bb858b141666ed5fec/metadata.json new file mode 100644 index 0000000..aa693fe --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d90add055721f1bb858b141666ed5fec/metadata.json @@ -0,0 +1 @@ +{"duration": 1.1046228408813477, "input_args": {"instruction": "\"Context: Disease Crohn's disease associates Gene IL10RA. Disease Crohn's disease associates Gene IL10. Disease Crohn's disease associates Gene IL1RL1. Disease Crohn's disease associates Gene IL18RAP. Variant rs9271060 associates Disease Crohn's disease. Disease Crohn's disease associates Gene TNFSF15. Disease Crohn's disease associates Gene IL12B. Variant rs17695092 associates Disease Crohn's disease. Variant rs9491697 associates Disease Crohn's disease. Variant rs2149085 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IL18R1. Variant rs61959448 associates Disease Crohn's disease. Variant rs3197999 associates Disease Crohn's disease. Variant rs12521868 associates Disease Crohn's disease. Variant rs11743851 associates Disease Crohn's disease. Variant rs184950714 associates Disease Crohn's disease. Disease Crohn's disease associates Gene IFNGR2. Variant rs9271366 associates Disease Crohn's disease. Variant rs9286879 associates Disease Crohn's disease. Variant rs11741861 associates Disease Crohn's disease. Variant rs80161952 associates Disease Crohn's disease. Variant rs957100 associates Disease Crohn's disease. Variant rs2188962 associates Disease Crohn's disease. Variant rs61839660 associates Disease Crohn's disease. Variant rs55951892 associates Disease Crohn's disease. Variant rs4902642 associates Disease Crohn's disease. Variant rs2006996 associates Disease Crohn's disease. Variant rs4871611 associates Disease Crohn's disease. Variant rs11894081 associates Disease Crohn's disease. Variant rs17391694 associates Disease Crohn's disease. Variant rs116392568 associates Disease Crohn's disease. Variant rs6908425 associates Disease Crohn's disease. Variant rs13003464 associates Disease Crohn's disease. Variant rs6738490 associates Disease Crohn's disease. Variant rs4821544 associates Disease Crohn's disease. Variant rs9491891 associates Disease Crohn's disease. Variant rs4703855 associates Disease Crohn's disease. Variant rs2413583 associates Disease Crohn's disease. Disease Crohn's disease associates Gene BTNL2. Variant rs34804116 associates Disease Crohn's disease. Variant rs3792109 associates Disease Crohn's disease. Disease Crohn's disease associates Gene LTBR. Variant rs4263839 associates Disease Crohn's disease. Variant rs395157 associates Disease Crohn's disease. Variant rs12994997 associates Disease Crohn's disease. Variant rs1893217 associates Disease Crohn's disease. Variant rs6503695 associates Disease Crohn's disease. Variant rs12946510 associates Disease Crohn's disease. Variant rs314313 associates Disease Crohn's disease. Variant rs11581607 associates Disease Crohn's disease. Variant rs34592089 associates Disease Crohn's disease. Variant rs4796791 associates Disease Crohn's disease. Variant rs34779708 associates Disease Crohn's disease. Variant rs3792108 associates Disease Crohn's disease. Variant rs9297145 associates Disease Crohn's disease. Variant rs4957294 associates Disease Crohn's disease. Variant rs915286 associates Disease Crohn's disease. Variant rs3853824 associates Disease Crohn's disease. Variant rs6716753 associates Disease Crohn's disease. Variant rs11584383 associates Disease Crohn's disease. Variant rs504963 associates Disease Crohn's disease. Variant rs11679753 associates Disease Crohn's disease. Variant rs1250546 associates Disease Crohn's disease. Variant rs12722515 associates Disease Crohn's disease. Variant rs114985235 associates Disease Crohn's disease. Variant rs4976646 associates Disease Crohn's disease. Variant rs1199103 associates Disease Crohn's disease. Variant rs17694108 associates Disease Crohn's disease. Disease Crohn's disease associates Gene TNFRSF6B. Variant rs11681525 associates Disease Crohn's disease. Variant rs6708413 associates Disease Crohn's disease. Variant rs11742570 associates Disease Crohn's disease. Variant rs9858542 associates Disease Crohn's disease. Variant rs2274910 associates Disease Crohn's disease. Variant rs9358372 associates Disease Crohn's disease. Disease inflammatory bowel disease associates Gene HLA-B. Disease inflammatory bowel disease associates Gene IL10RB. Variant chr5:17098189 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IFNGR2. Disease inflammatory bowel disease associates Gene TNFSF15. Disease inflammatory bowel disease associates Gene IL1RL1. Disease inflammatory bowel disease associates Gene IL10RA. Disease inflammatory bowel disease associates Gene IL18RAP. Disease inflammatory bowel disease associates Gene IL10. Variant rs35164067 associates Disease inflammatory bowel disease. Variant rs11708026 associates Disease inflammatory bowel disease. Variant rs11677953 associates Disease inflammatory bowel disease. Variant rs16953946 associates Disease inflammatory bowel disease. Variant rs144344067 associates Disease inflammatory bowel disease. Variant rs11672983 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL18R1. Variant rs371608920 associates Disease inflammatory bowel disease. Variant rs1800872 associates Disease inflammatory bowel disease. Variant rs142738614 associates Disease inflammatory bowel disease. Variant rs4692386 associates Disease inflammatory bowel disease. Variant rs3766920 associates Disease inflammatory bowel disease. Variant rs11768365 associates Disease inflammatory bowel disease. Variant rs4656958 associates Disease inflammatory bowel disease. Variant rs116392568 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene TGFB1. Disease inflammatory bowel disease associates Gene TNFRSF6B. Variant chr9:5057580 associates Disease inflammatory bowel disease. Variant rs17061048 associates Disease inflammatory bowel disease. Variant rs4946717 associates Disease inflammatory bowel disease. Variant rs17207042 associates Disease inflammatory bowel disease. Variant rs17694108 associates Disease inflammatory bowel disease. Variant rs11581607 associates Disease inflammatory bowel disease. Variant rs149169037 associates Disease inflammatory bowel disease. Variant rs11743851 associates Disease inflammatory bowel disease. Variant rs11741861 associates Disease inflammatory bowel disease. Variant rs6708413 associates Disease inflammatory bowel disease. Variant rs921720 associates Disease inflammatory bowel disease. Variant rs139073251 associates Disease inflammatory bowel disease. Variant rs11681525 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene HLA-DRB1. Variant rs1674812448 associates Disease inflammatory bowel disease. Variant rs4676410 associates Disease inflammatory bowel disease. Variant rs1420098 associates Disease inflammatory bowel disease. Variant rs1893217 associates Disease inflammatory bowel disease. Variant rs2188962 associates Disease inflammatory bowel disease. Variant rs4380874 associates Disease inflammatory bowel disease. Variant rs59536457 associates Disease inflammatory bowel disease. Variant rs11641016 associates Disease inflammatory bowel disease. Variant rs6592362 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL37. Variant rs4409764 associates Disease inflammatory bowel disease. Variant rs4836519 associates Disease inflammatory bowel disease. Variant rs17656349 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene HLA-DQA1. Variant rs12946510 associates Disease inflammatory bowel disease. Variant rs6920220 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene LPP. Variant rs3197999 associates Disease inflammatory bowel disease. Variant rs59043219 associates Disease inflammatory bowel disease. Variant rs3776414 associates Disease inflammatory bowel disease. Variant rs146951811 associates Disease inflammatory bowel disease. Variant rs2179070 associates Disease inflammatory bowel disease. Variant rs6586030 associates Disease inflammatory bowel disease. Variant rs12722515 associates Disease inflammatory bowel disease. Variant rs3184504 associates Disease inflammatory bowel disease. Variant rs3853824 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL12B. Variant rs56167332 associates Disease inflammatory bowel disease. Variant rs10761659 associates Disease inflammatory bowel disease. Variant rs9358372 associates Disease inflammatory bowel disease. Variant rs1801274 associates Disease inflammatory bowel disease. Variant rs34779708 associates Disease inflammatory bowel disease. Variant rs3749171 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL2RA. Variant rs8049439 associates Disease inflammatory bowel disease. \\nQuestion: Out of the given list, which Gene is associated with Crohn's disease and inflammatory bowel disease. Given list is: HBB, TNRC18, IL23R, RP1, LOXL1\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048244.0162272}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d90add055721f1bb858b141666ed5fec/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d90add055721f1bb858b141666ed5fec/output.pkl Binary files differnew file mode 100644 index 0000000..54c5da9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d90add055721f1bb858b141666ed5fec/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d95749bc14e42e71229b35f00da525b0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d95749bc14e42e71229b35f00da525b0/metadata.json new file mode 100644 index 0000000..89fc513 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d95749bc14e42e71229b35f00da525b0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4830470085144043, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with autoimmune hepatitis and rheumatic heart disease. Given list is: KAT2B, HLA-DQB1, GSDMB, ALDH1A2, THADA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989649.1109352}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d95749bc14e42e71229b35f00da525b0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d95749bc14e42e71229b35f00da525b0/output.pkl Binary files differnew file mode 100644 index 0000000..9fcb2ed --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/d95749bc14e42e71229b35f00da525b0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/da11551b582de8421b12d8bece883f41/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/da11551b582de8421b12d8bece883f41/metadata.json new file mode 100644 index 0000000..066f555 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/da11551b582de8421b12d8bece883f41/metadata.json @@ -0,0 +1 @@ +{"duration": 0.56758713722229, "input_args": {"instruction": "'Context: Variant rs104894230 associates Disease myelodysplastic syndrome. Variant rs12203592 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CHEK2. Variant rs1057519960 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene PALB2. Disease myelodysplastic syndrome associates Gene SH2B3. Variant rs1203207717 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene TSR2. Variant rs371246226 associates Disease myelodysplastic syndrome. Variant rs121913502 associates Disease myelodysplastic syndrome. Variant rs121913250 associates Disease myelodysplastic syndrome. Variant rs121434595 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCD2. Variant rs11540652 associates Disease myelodysplastic syndrome. Variant rs121913503 associates Disease myelodysplastic syndrome. Variant rs377577594 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene BRCA2. Variant rs121434596 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene PTPN11. Variant rs387906631 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCB. Variant rs121913500 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CDKN2A. Disease myelodysplastic syndrome associates Gene ERCC4. Disease myelodysplastic syndrome associates Gene XRCC2. Variant rs121913499 associates Disease myelodysplastic syndrome. Variant rs121913237 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CSF3R. Variant rs147001633 associates Disease myelodysplastic syndrome. Variant rs121912651 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene ATRX. Disease myelodysplastic syndrome associates Gene BUB1B. Disease myelodysplastic syndrome associates Gene GNB1. Variant rs1576745225 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene CEP57. Gene MIR181B2 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene GATA2. Disease myelodysplastic syndrome associates Gene ADA2. Disease myelodysplastic syndrome associates Gene RAD51C. Disease myelodysplastic syndrome associates Gene MDM2. Variant rs104894229 associates Disease myelodysplastic syndrome.. Variant rs193303018 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCC. Disease myelodysplastic syndrome associates Gene FANCF. Disease myelodysplastic syndrome associates Gene FANCL. Disease myelodysplastic syndrome associates Gene FANCA. Disease myelodysplastic syndrome associates Gene ADH5. Disease myelodysplastic syndrome associates Gene FANCE. Disease myelodysplastic syndrome associates Gene GATA1. Disease myelodysplastic syndrome associates Gene FANCI. Gene MIR124-3 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCG. Gene MIR124-2 associates Disease myelodysplastic syndrome. Gene MIR424 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene FANCM. Disease myelodysplastic syndrome associates Gene DNAJC21. Disease myelodysplastic syndrome associates Gene RAD51. Variant rs752856195 associates Disease myelodysplastic syndrome. Disease myelodysplastic syndrome associates Gene SMARCD2. Variant rs371769427 associates Disease myelodysplastic syndrome. Disease allergic rhinitis associates Gene MFSD13A. Disease allergic rhinitis associates Gene CSF2RB. Disease allergic rhinitis associates Gene MS4A2. Disease allergic rhinitis associates Gene HLA-DQB1. Disease allergic rhinitis associates Gene HLA-DMB. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene HLA-B. Variant chr6:32631116 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ZBTB38. Variant rs950881 associates Disease allergic rhinitis. Variant rs11685995 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene D2HGDH. Variant rs45613035 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs62404084 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene COL15A1. Disease allergic rhinitis associates Gene JAZF1. Variant rs1504215 associates Disease allergic rhinitis. Variant rs11677002 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Variant rs4381563 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD51B. Disease allergic rhinitis associates Gene BLTP1. Variant rs1140310 associates Disease allergic rhinitis. Variant rs4616071 associates Disease allergic rhinitis. Variant rs6021268 associates Disease allergic rhinitis. Variant rs1950897 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Variant rs61192126 associates Disease allergic rhinitis. Variant rs6066184 associates Disease allergic rhinitis. Variant rs13395467 associates Disease allergic rhinitis. Variant rs10468514 associates Disease allergic rhinitis. Variant rs8126516 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Variant rs2228145 associates Disease allergic rhinitis. Variant rs10501149 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ITGB8. Variant rs491087 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SULT1A1. Variant rs9816071 associates Disease allergic rhinitis. Variant rs2160203 associates Disease allergic rhinitis. Variant rs61839660 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene GLB1. Variant rs61815559 associates Disease allergic rhinitis. Variant rs17513503 associates Disease allergic rhinitis. Variant rs4722758 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFSF4. Disease allergic rhinitis associates Gene RUNX1. Disease allergic rhinitis associates Gene AHI1. Variant rs62623446 associates Disease allergic rhinitis. Variant rs5743604 associates Disease allergic rhinitis. Variant rs4845604 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene RAD50. Variant rs1438673 associates Disease allergic rhinitis.. Variant rs3918226 associates Disease allergic rhinitis. Variant rs3128967 associates Disease allergic rhinitis. Variant rs28690449 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC15A2. Variant rs144829310 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene FCER1G. Variant rs17133587 associates Disease allergic rhinitis. Variant rs4833095 associates Disease allergic rhinitis. Variant rs61907713 associates Disease allergic rhinitis. Variant rs66819621 associates Disease allergic rhinitis. Variant rs186856025 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene PRDM16. Variant rs11539209 associates Disease allergic rhinitis. Variant rs3024971 associates Disease allergic rhinitis. \\nQuestion: Out of the given list, which Gene is associated with myelodysplastic syndrome and allergic rhinitis. Given list is: ARMS2, CHEK2, HLA-B, BTN3A1, GSDMB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989831.507711}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/da11551b582de8421b12d8bece883f41/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/da11551b582de8421b12d8bece883f41/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/da11551b582de8421b12d8bece883f41/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dacdf576abd125daacfbe4342c29925b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dacdf576abd125daacfbe4342c29925b/metadata.json new file mode 100644 index 0000000..8fa0ba4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dacdf576abd125daacfbe4342c29925b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6374561786651611, "input_args": {"instruction": "'Context: Disease squamous cell carcinoma associates Gene BRCA2. Disease squamous cell carcinoma associates Gene EPB41L1. Variant rs35063026 associates Disease squamous cell carcinoma. Variant rs12203592 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene GJB2. Disease squamous cell carcinoma associates Gene CHEK2. Disease squamous cell carcinoma associates Gene MMP1. Disease squamous cell carcinoma associates Gene CYP1B1. Disease squamous cell carcinoma associates Gene CDKN2A. Disease squamous cell carcinoma associates Gene GJB6. Variant rs9383064 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene KRT5. Disease squamous cell carcinoma associates Gene AHR. Disease squamous cell carcinoma associates Gene HERC2. Variant rs62246017 associates Disease squamous cell carcinoma. Variant rs6059655 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene TP53. Disease squamous cell carcinoma associates Gene TERT. Variant rs267598140 associates Disease squamous cell carcinoma. Variant rs10810657 associates Disease squamous cell carcinoma. Variant rs121913431 associates Disease squamous cell carcinoma. Variant rs4268748 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene SLC6A17. Variant rs16891982 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene PTEN. Disease squamous cell carcinoma associates Gene COL7A1. Disease squamous cell carcinoma associates Gene DDB2. Variant rs11571833 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene DTNBP1. Variant rs4455710 associates Disease squamous cell carcinoma. Gene MIR485 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene KRT14. Disease squamous cell carcinoma associates Gene SMARCAD1. Variant rs121913230 associates Disease squamous cell carcinoma. Variant rs35324266 associates Disease squamous cell carcinoma. Variant rs13301660 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene CTSC. Variant rs149906873 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene COL17A1. Disease squamous cell carcinoma associates Gene GTF2E2. Variant rs17879961 associates Disease squamous cell carcinoma. Variant rs1246946 associates Disease squamous cell carcinoma. Variant rs62209647 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene COL14A1. Gene MIR10B associates Disease squamous cell carcinoma. Variant rs8063761 associates Disease squamous cell carcinoma. Gene MIR363 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene BLM. Variant rs6791479 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene GTF2H5. Disease squamous cell carcinoma associates Gene SASH1. Disease squamous cell carcinoma associates Gene PIK3CA. Variant rs11707807 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene OCA2. Disease squamous cell carcinoma associates Gene BACH2. Disease squamous cell carcinoma associates Gene XPA. Disease squamous cell carcinoma associates Gene STAT1. Disease squamous cell carcinoma associates Gene FOXP1. Disease squamous cell carcinoma associates Gene ERCC2. Disease squamous cell carcinoma associates Gene SLX4. Disease squamous cell carcinoma associates Gene ATR. Disease squamous cell carcinoma associates Gene LAMC2. Disease squamous cell carcinoma associates Gene ATP11A. Disease squamous cell carcinoma associates Gene XPC. Disease squamous cell carcinoma associates Gene ERCC4. Disease squamous cell carcinoma associates Gene BRD4. Disease squamous cell carcinoma associates Gene GATA1. Gene MIR494 associates Disease squamous cell carcinoma. Variant rs1805007 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene NOTCH1. Disease squamous cell carcinoma associates Gene TMC6. Disease squamous cell carcinoma associates Gene WNT10A. Disease squamous cell carcinoma associates Gene HLA-DQA1. Disease squamous cell carcinoma associates Gene TNFRSF10B. Disease squamous cell carcinoma associates Gene POLH. Disease lung squamous cell carcinoma associates Gene CYP2A6.. Disease lung squamous cell carcinoma associates Gene BRCA2. Variant rs967461896 associates Disease lung squamous cell carcinoma. Variant rs116725014 associates Disease lung squamous cell carcinoma. Variant rs864622237 associates Disease lung squamous cell carcinoma. Variant rs116822326 associates Disease lung squamous cell carcinoma. Variant rs1794304820 associates Disease lung squamous cell carcinoma. Variant rs142618987 associates Disease lung squamous cell carcinoma. Variant rs1668958808 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene CHEK2. Variant rs467095 associates Disease lung squamous cell carcinoma. Variant rs1669420011 associates Disease lung squamous cell carcinoma. Variant rs2276550 associates Disease lung squamous cell carcinoma. Variant rs36109883 associates Disease lung squamous cell carcinoma. Variant rs116461399 associates Disease lung squamous cell carcinoma. Variant rs35768595 associates Disease lung squamous cell carcinoma. Variant rs867262025 associates Disease lung squamous cell carcinoma. Variant rs866987936 associates Disease lung squamous cell carcinoma. Variant rs1724368987 associates Disease lung squamous cell carcinoma. Variant rs3795850 associates Disease lung squamous cell carcinoma. Variant rs200827273 associates Disease lung squamous cell carcinoma. Variant rs368272654 associates Disease lung squamous cell carcinoma. Variant rs1057520039 associates Disease lung squamous cell carcinoma. Variant rs985033810 associates Disease lung squamous cell carcinoma. Variant rs13191296 associates Disease lung squamous cell carcinoma. Variant rs1057519884 associates Disease lung squamous cell carcinoma. Variant rs876658468 associates Disease lung squamous cell carcinoma. Variant rs11844632 associates Disease lung squamous cell carcinoma. Variant rs34966100 associates Disease lung squamous cell carcinoma. Variant rs1057519882 associates Disease lung squamous cell carcinoma. Variant rs578015216 associates Disease lung squamous cell carcinoma. Variant rs1057519895 associates Disease lung squamous cell carcinoma. Variant rs483352697 associates Disease lung squamous cell carcinoma. Variant rs544282452 associates Disease lung squamous cell carcinoma. Variant rs1057519889 associates Disease lung squamous cell carcinoma. Variant rs1057519883 associates Disease lung squamous cell carcinoma. Variant rs116310021 associates Disease lung squamous cell carcinoma. Variant rs866775781 associates Disease lung squamous cell carcinoma. Variant rs1057519926 associates Disease lung squamous cell carcinoma. Variant rs2300206 associates Disease lung squamous cell carcinoma. Variant rs876659802 associates Disease lung squamous cell carcinoma. Variant rs942158624 associates Disease lung squamous cell carcinoma. Variant rs56084662 associates Disease lung squamous cell carcinoma. Variant rs149866169 associates Disease lung squamous cell carcinoma. Variant rs121913272 associates Disease lung squamous cell carcinoma. Variant rs1057519923 associates Disease lung squamous cell carcinoma. Variant rs1057519925 associates Disease lung squamous cell carcinoma. Variant rs587782329 associates Disease lung squamous cell carcinoma. Variant rs34928889 associates Disease lung squamous cell carcinoma. Variant rs876660821 associates Disease lung squamous cell carcinoma. Variant rs56113850 associates Disease lung squamous cell carcinoma. Variant rs1057519922 associates Disease lung squamous cell carcinoma. Variant rs1057520004 associates Disease lung squamous cell carcinoma. Variant rs587781991 associates Disease lung squamous cell carcinoma. Variant rs148883465 associates Disease lung squamous cell carcinoma. Variant rs1057520018 associates Disease lung squamous cell carcinoma. Disease lung squamous cell carcinoma associates Gene GPX6. Variant rs1057520003 associates Disease lung squamous cell carcinoma. Variant rs587781525 associates Disease lung squamous cell carcinoma. Variant rs1057519920 associates Disease lung squamous cell carcinoma. Variant rs56404467 associates Disease lung squamous cell carcinoma. Variant rs1057519879 associates Disease lung squamous cell carcinoma. Variant rs1721872448 associates Disease lung squamous cell carcinoma. Variant rs1057519896 associates Disease lung squamous cell carcinoma. Variant rs555765842 associates Disease lung squamous cell carcinoma. Variant rs116418332 associates Disease lung squamous cell carcinoma. Variant rs1057519932 associates Disease lung squamous cell carcinoma. Variant rs121913281 associates Disease lung squamous cell carcinoma. Variant rs148861668 associates Disease lung squamous cell carcinoma. Variant rs1057519980 associates Disease lung squamous cell carcinoma. Variant rs121913274 associates Disease lung squamous cell carcinoma. Variant rs121913465 associates Disease lung squamous cell carcinoma. Variant rs121912656 associates Disease lung squamous cell carcinoma. Variant rs1057520008 associates Disease lung squamous cell carcinoma. Variant rs3117582 associates Disease lung squamous cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with squamous cell carcinoma and lung squamous cell carcinoma. Given list is: ARMS2, BRCA2, BTBD9, IL6, ALDH1A2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990186.0036805}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dacdf576abd125daacfbe4342c29925b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dacdf576abd125daacfbe4342c29925b/output.pkl Binary files differnew file mode 100644 index 0000000..6634bf1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dacdf576abd125daacfbe4342c29925b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dae98e9cf14f0fa1d4e936989f12a96f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dae98e9cf14f0fa1d4e936989f12a96f/metadata.json new file mode 100644 index 0000000..8eb0d94 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dae98e9cf14f0fa1d4e936989f12a96f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5551624298095703, "input_args": {"instruction": "'Context: Disease herpes zoster associates Gene HLA-B. Disease herpes zoster associates Gene HLA-A. Variant rs142765674 associates Disease herpes zoster. Variant rs144721899 associates Disease herpes zoster. Disease herpes zoster associates Gene IL10. Variant rs537841689 associates Disease herpes zoster.. Variant rs541558502 associates Disease herpes zoster. Variant rs17199328 associates Disease herpes zoster. Variant rs117171752 associates Disease herpes zoster. Variant rs2574974 associates Disease herpes zoster. Disease herpes zoster associates Gene FAM110B. Disease herpes zoster associates Gene POLR3C. Variant rs147482218 associates Disease herpes zoster. Variant rs9810195 associates Disease herpes zoster. Disease herpes zoster associates Gene POLR3A. Disease herpes zoster associates Gene LRRC32. Disease herpes zoster associates Gene STAT1. Disease herpes zoster associates Gene TMC7. Variant rs75640364 associates Disease herpes zoster. Disease herpes zoster associates Gene STAT3. Variant rs765885335 associates Disease herpes zoster. Disease herpes zoster presents Symptom Oral Manifestations. Disease herpes zoster presents Symptom Hyperesthesia. Disease ontology identifier of herpes zoster is DOID:8536. Disease herpes zoster presents Symptom Earache. Disease herpes zoster presents Symptom Facial Pain. Disease herpes zoster presents Symptom Neuralgia. Disease herpes zoster presents Symptom Hypesthesia. Disease herpes zoster presents Symptom Toothache. Disease herpes zoster presents Symptom Neuralgia, Postherpetic. Disease trigeminal neuralgia resembles Disease herpes zoster. Disease granulomatous angiitis resembles Disease herpes zoster. Compound Tacrolimus contraindicates Disease herpes zoster. Disease herpes zoster presents Symptom Respiratory Paralysis. Disease herpes zoster presents Symptom Hiccup. Disease herpes zoster presents Symptom Horner Syndrome. Compound Capsaicin treats Disease herpes zoster. Disease herpes zoster localizes Anatomy cornea. Disease herpes zoster presents Symptom Paresis. Disease peroneal neuropathy resembles Disease herpes zoster. Disease cranial nerve palsy resembles Disease herpes zoster. Organism Human alphaherpesvirus 3 causes Disease herpes zoster. Disease allergic rhinitis associates Gene HLA-B. Disease allergic rhinitis associates Gene HLA-DPB1. Disease allergic rhinitis associates Gene HLA-DQA1. Disease allergic rhinitis associates Gene HLA-DQB1. Disease allergic rhinitis associates Gene HLA-DMB. Disease allergic rhinitis associates Gene IL2RA. Disease allergic rhinitis associates Gene TNFSF4. Variant rs950881 associates Disease allergic rhinitis. Variant rs1950897 associates Disease allergic rhinitis. Variant rs144829310 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene HSPE1-MOB4. Variant chr6:32631116 associates Disease allergic rhinitis. Variant rs3793079 associates Disease allergic rhinitis. Variant rs143021546 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1B. Variant rs2070901 associates Disease allergic rhinitis. Variant rs148505069 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene ZPBP2. Variant rs62404084 associates Disease allergic rhinitis. Variant rs59183580 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL1RL1. Variant rs9273373 associates Disease allergic rhinitis. Variant rs2070902 associates Disease allergic rhinitis. Variant rs3128967 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene CSF2RB. Disease allergic rhinitis associates Gene FOSL2. Variant rs7953139 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IL13. Disease allergic rhinitis associates Gene TNFRSF8. Variant rs17294280 associates Disease allergic rhinitis. Variant rs34004019 associates Disease allergic rhinitis. Gene MIR498 associates Disease allergic rhinitis. Variant rs491087 associates Disease allergic rhinitis. Variant rs2961920 associates Disease allergic rhinitis. Variant rs1689510 associates Disease allergic rhinitis. Variant rs17142799 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TNFRSF11A. Variant rs4616071 associates Disease allergic rhinitis. Variant rs11671925 associates Disease allergic rhinitis. Variant rs28407950 associates Disease allergic rhinitis. Variant rs9816071 associates Disease allergic rhinitis. Variant rs962993 associates Disease allergic rhinitis. Variant rs35597970 associates Disease allergic rhinitis. Variant rs1444789 associates Disease allergic rhinitis. Gene MIR143 associates Disease allergic rhinitis. Variant rs9297768 associates Disease allergic rhinitis. Variant rs4939490 associates Disease allergic rhinitis. Variant rs9442514 associates Disease allergic rhinitis. Variant rs1438673 associates Disease allergic rhinitis.. Disease allergic rhinitis associates Gene IL7R. Variant rs4833095 associates Disease allergic rhinitis. Variant rs12886625 associates Disease allergic rhinitis. Variant rs3116590 associates Disease allergic rhinitis. Variant rs61977073 associates Disease allergic rhinitis. Variant rs5743618 associates Disease allergic rhinitis. Variant rs12365699 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene IRF1. Variant rs12509403 associates Disease allergic rhinitis. Variant rs9986945 associates Disease allergic rhinitis. Variant rs891058 associates Disease allergic rhinitis. Variant rs9775039 associates Disease allergic rhinitis. Variant rs35350651 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene TLR1. Variant rs2399472 associates Disease allergic rhinitis. Variant rs11680788 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene SLC15A2. Variant rs11685995 associates Disease allergic rhinitis. Disease allergic rhinitis associates Gene COL15A1. Disease allergic rhinitis associates Gene PHF19. Variant rs5743604 associates Disease allergic rhinitis. Variant rs707954 associates Disease allergic rhinitis. Variant rs11644510 associates Disease allergic rhinitis. Variant rs147725790 associates Disease allergic rhinitis. Variant rs45613035 associates Disease allergic rhinitis. Variant rs12887759 associates Disease allergic rhinitis. \\nQuestion: Out of the given list, which Gene is associated with herpes zoster and allergic rhinitis. Given list is: HLA-B, HLA-B, IGF2BP2, CLPTM1L, CACNA2D1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757990016.3410988}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dae98e9cf14f0fa1d4e936989f12a96f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dae98e9cf14f0fa1d4e936989f12a96f/output.pkl Binary files differnew file mode 100644 index 0000000..3b393cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dae98e9cf14f0fa1d4e936989f12a96f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/db42964b8cc454e0c9d207f79bd28558/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/db42964b8cc454e0c9d207f79bd28558/metadata.json new file mode 100644 index 0000000..868c556 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/db42964b8cc454e0c9d207f79bd28558/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4873936176300049, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with liver cirrhosis and non-alcoholic fatty liver disease. Given list is: HYKK, PLA2G6, ADH1B, PNPLA3, RGS14'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989706.0630405}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/db42964b8cc454e0c9d207f79bd28558/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/db42964b8cc454e0c9d207f79bd28558/output.pkl Binary files differnew file mode 100644 index 0000000..4477af0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/db42964b8cc454e0c9d207f79bd28558/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dc3c09ac8201dda875c88f85224779af/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dc3c09ac8201dda875c88f85224779af/metadata.json new file mode 100644 index 0000000..bd28496 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dc3c09ac8201dda875c88f85224779af/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9252092838287354, "input_args": {"instruction": "'Context: Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Disease triple-receptor negative breast cancer associates Gene RPS18. Disease myeloproliferative neoplasm associates Gene ATM. Gene MIR15B associates Disease myeloproliferative neoplasm. Gene MIR146B associates Disease myeloproliferative neoplasm. Gene MIR375 associates Disease myeloproliferative neoplasm. Gene MIR10A associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Variant rs121913504 associates Disease myeloproliferative neoplasm. Variant rs121913520 associates Disease myeloproliferative neoplasm. Gene MIR15A associates Disease myeloproliferative neoplasm. \\nQuestion: Out of the given list, which Gene is associated with triple-receptor negative breast cancer and myeloproliferative neoplasm. Given list is: ERAP1, SNCA, TERT, ULK4, ADGRG6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989511.2079318}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dc3c09ac8201dda875c88f85224779af/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dc3c09ac8201dda875c88f85224779af/output.pkl Binary files differnew file mode 100644 index 0000000..93e9911 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dc3c09ac8201dda875c88f85224779af/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd401773ea83f14606c4467d762e5d11/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd401773ea83f14606c4467d762e5d11/metadata.json new file mode 100644 index 0000000..4acb818 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd401773ea83f14606c4467d762e5d11/metadata.json @@ -0,0 +1 @@ +{"duration": 1.2204360961914062, "input_args": {"instruction": "'Context: Variant rs1456305; rs1551510; rs1456314; rs1456306; rs7816535; rs1378897; rs17831626; rs1016342; rs6994316; rs1031588; rs6470494; rs6993569; rs7825414; rs1016343 associates Disease prostate carcinoma. Variant rs115950603 associates Disease prostate carcinoma. Variant rs11568818 associates Disease prostate carcinoma. Variant rs115306967 associates Disease prostate carcinoma. Variant rs11561564 associates Disease prostate carcinoma. Variant rs80151891 associates Disease prostate carcinoma. Variant rs12558898 associates Disease prostate carcinoma. Variant rs11599847 associates Disease prostate carcinoma. Variant rs11650494 associates Disease prostate carcinoma. Variant rs4871790 associates Disease prostate carcinoma. Variant rs11544331 associates Disease prostate carcinoma. Variant rs9469899 associates Disease prostate carcinoma. Variant rs4976790 associates Disease prostate carcinoma. Variant rs4075646 associates Disease prostate carcinoma. Variant rs8089411 associates Disease prostate carcinoma. Variant rs9381080 associates Disease prostate carcinoma. Variant rs11480453 associates Disease prostate carcinoma. Variant rs116154780 associates Disease prostate carcinoma. Variant rs59710626 associates Disease prostate carcinoma. Variant rs4871798 associates Disease prostate carcinoma. Variant rs11649743 associates Disease prostate carcinoma. Variant rs149892036 associates Disease prostate carcinoma. Variant rs11986220 associates Disease prostate carcinoma. Variant rs6853490 associates Disease prostate carcinoma. Variant rs6985504 associates Disease prostate carcinoma. Variant rs6956484 associates Disease prostate carcinoma. Variant rs12549761 associates Disease prostate carcinoma. Variant rs9306895 associates Disease prostate carcinoma. Variant rs9306894 associates Disease prostate carcinoma. Variant rs565189650 associates Disease prostate carcinoma. Variant rs187809440 associates Disease prostate carcinoma. Variant rs11859370 associates Disease prostate carcinoma. Variant rs12956892 associates Disease prostate carcinoma. Variant rs11452686 associates Disease prostate carcinoma. Variant rs68010938 associates Disease prostate carcinoma. Variant rs6983561 associates Disease prostate carcinoma. Variant rs12678349 associates Disease prostate carcinoma. Variant rs114780236 associates Disease prostate carcinoma. Variant rs146618443 associates Disease prostate carcinoma. Variant rs56391074 associates Disease prostate carcinoma. Variant rs11686272 associates Disease prostate carcinoma. Variant rs111595856 associates Disease prostate carcinoma. Variant rs12938538 associates Disease prostate carcinoma. Variant rs12665509 associates Disease prostate carcinoma. Variant rs11863709 associates Disease prostate carcinoma. Variant rs8093601 associates Disease prostate carcinoma. Variant chr8:129642851 associates Disease prostate carcinoma. Variant rs141536087 associates Disease prostate carcinoma. Variant rs12653946 associates Disease prostate carcinoma. Variant rs12051443 associates Disease prostate carcinoma. Variant rs4901313 associates Disease prostate carcinoma. Variant rs58809953 associates Disease prostate carcinoma. Variant rs139135938 associates Disease prostate carcinoma. Variant rs11629412 associates Disease prostate carcinoma. Variant rs11673591 associates Disease prostate carcinoma. Variant rs12480328 associates Disease prostate carcinoma. Variant rs13255059 associates Disease prostate carcinoma. Variant rs114810266 associates Disease prostate carcinoma. Variant rs4646284 associates Disease prostate carcinoma. Variant rs111599055 associates Disease prostate carcinoma. Variant rs74651796 associates Disease prostate carcinoma. Variant rs11651052 associates Disease prostate carcinoma. Variant rs61890184 associates Disease prostate carcinoma. Variant rs555607708 associates Disease prostate carcinoma. Variant rs11055034 associates Disease prostate carcinoma. Variant rs12769682 associates Disease prostate carcinoma. Variant rs544780844 associates Disease prostate carcinoma. Variant rs4952990 associates Disease prostate carcinoma. Variant rs11672691 associates Disease prostate carcinoma. Variant rs547171081 associates Disease prostate carcinoma. Variant rs4842687 associates Disease prostate carcinoma. Variant rs11666569 associates Disease prostate carcinoma. Variant rs5933765 associates Disease prostate carcinoma. Variant rs834608 associates Disease prostate carcinoma. Variant rs62451152 associates Disease prostate carcinoma. Disease large intestine cancer associates Gene CYP17A1. Disease large intestine cancer associates Gene PCNT. Disease large intestine cancer associates Gene GPR143. Disease large intestine cancer associates Gene PPP1R21. Disease large intestine cancer associates Gene AMPD3. Disease large intestine cancer associates Gene COL4A2. Disease large intestine cancer associates Gene TRPC6. Disease large intestine cancer associates Gene GNA12. Disease large intestine cancer associates Gene NAA25. Disease large intestine cancer associates Gene PKM. Disease large intestine cancer associates Gene HPGD. Disease large intestine cancer associates Gene FKBP5. Disease large intestine cancer associates Gene COLCA1. Disease large intestine cancer associates Gene NABP1. Disease large intestine cancer associates Gene GNAS. Disease large intestine cancer associates Gene SLC27A5. Disease large intestine cancer associates Gene BMP5. Disease large intestine cancer associates Gene SLC6A18. Disease large intestine cancer associates Gene PYGL. Disease large intestine cancer associates Gene PNKD. Disease large intestine cancer associates Gene POLD3. Disease large intestine cancer associates Gene LRP1. Disease large intestine cancer associates Gene SPSB2. Disease large intestine cancer associates Gene TTC22. Disease large intestine cancer associates Gene PREX1. Disease large intestine cancer associates Gene TMEM238L. Disease large intestine cancer associates Gene ETV6. Disease large intestine cancer associates Gene L1TD1. Disease large intestine cancer associates Gene BMP7. Disease large intestine cancer associates Gene CRTC3. Disease large intestine cancer associates Gene ADAMTS9. Disease large intestine cancer associates Gene SMAD6. Disease large intestine cancer associates Gene SMAD3. Disease large intestine cancer associates Gene CDH1.. \\nQuestion: Out of the given list, which Variant is associated with prostate carcinoma and large intestine cancer. Given list is: rs6983267, rs1150757, rs3129939, rs12917707, rs595244'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758050470.2212214}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd401773ea83f14606c4467d762e5d11/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd401773ea83f14606c4467d762e5d11/output.pkl Binary files differnew file mode 100644 index 0000000..3c0129e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd401773ea83f14606c4467d762e5d11/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd9303c966b57610ff3c77f012156e7b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd9303c966b57610ff3c77f012156e7b/metadata.json new file mode 100644 index 0000000..7a68795 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd9303c966b57610ff3c77f012156e7b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.603280782699585, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease lymphocytic colitis. Disease collagenous colitis resembles Disease toxic megacolon. Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Disease cutaneous lupus erythematosus associates Gene CSNK2B. Gene MIR485 associates Disease cutaneous lupus erythematosus. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs9267531 associates Disease cutaneous lupus erythematosus. \\nQuestion: Out of the given list, which Gene is associated with collagenous colitis and cutaneous lupus erythematosus. Given list is: MYH7, HLA-DQA1, HLA-DQA1, TERT, BARD1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989941.5596104}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd9303c966b57610ff3c77f012156e7b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd9303c966b57610ff3c77f012156e7b/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dd9303c966b57610ff3c77f012156e7b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/de97fa3b2298f08720e647d4a0bacb14/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/de97fa3b2298f08720e647d4a0bacb14/metadata.json new file mode 100644 index 0000000..fe06af4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/de97fa3b2298f08720e647d4a0bacb14/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5362553596496582, "input_args": {"instruction": "'Context: Variant rs505922 associates Disease duodenal ulcer. Variant rs2294008 associates Disease duodenal ulcer.. Disease duodenal ulcer associates Gene CDKN1A. Disease duodenal ulcer associates Gene CDKN1B. Disease duodenal ulcer associates Gene ABO. Disease duodenal ulcer associates Gene PLA2G4A. Disease duodenal ulcer associates Gene XYLT2. Disease duodenal ulcer associates Gene CDKN2B. Disease duodenal ulcer associates Gene CDKN2C. Disease duodenal ulcer associates Gene ARID1B. Disease duodenal ulcer associates Gene MEN1. Disease duodenal ulcer associates Gene EP300. Disease duodenal ulcer presents Symptom Dyspepsia. Disease duodenal ulcer isa Disease peptic ulcer disease. Compound CID 16685690 treats Disease duodenal ulcer. Disease duodenal ulcer associates Gene SYK. Disease duodenal ulcer associates Gene PLG. Disease ontology identifier of duodenal ulcer is DOID:1724. Disease duodenal ulcer associates Gene PSCA. Disease duodenal ulcer associates Gene JRK. Compound 4-Aminosalicylic acid contraindicates Disease duodenal ulcer. Disease duodenal ulcer presents Symptom Asthenia. Variant rs2294008 associates Disease atrophic gastritis.. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene IL1RN. Disease atrophic gastritis associates Gene IL1B. Disease atrophic gastritis associates Gene DEF6. Disease atrophic gastritis associates Gene CTLA4. Disease atrophic gastritis associates Gene NFKB1. Gene MIR155 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene IFIH1. Disease atrophic gastritis associates Gene KRAS. Disease atrophic gastritis associates Gene CDH1. Compound 3-(4-Amino-2-methyl-pyrimidin-5-ylmethyl)-5-(2-hydroxy-ethyl)-4-methyl-thiazol-3-ium contraindicates Disease atrophic gastritis. \\nQuestion: Out of the given list, which Variant is associated with duodenal ulcer and atrophic gastritis. Given list is: rs1975197, rs2294008, rs17398575, rs755383, rs1801274'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048932.2999365}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/de97fa3b2298f08720e647d4a0bacb14/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/de97fa3b2298f08720e647d4a0bacb14/output.pkl Binary files differnew file mode 100644 index 0000000..407b953 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/de97fa3b2298f08720e647d4a0bacb14/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/deb719efc63bc94fea88942d9619e0e5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/deb719efc63bc94fea88942d9619e0e5/metadata.json new file mode 100644 index 0000000..261ab02 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/deb719efc63bc94fea88942d9619e0e5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5105392932891846, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and psoriatic arthritis. Given list is: ARMS2, RORA, TLR1, ADH1B, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048719.0208287}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/deb719efc63bc94fea88942d9619e0e5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/deb719efc63bc94fea88942d9619e0e5/output.pkl Binary files differnew file mode 100644 index 0000000..bc878cc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/deb719efc63bc94fea88942d9619e0e5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/decaea2231c59b39ab6a8e360461daad/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/decaea2231c59b39ab6a8e360461daad/metadata.json new file mode 100644 index 0000000..447d631 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/decaea2231c59b39ab6a8e360461daad/metadata.json @@ -0,0 +1 @@ +{"duration": 17.032469749450684, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with rheumatic heart disease and autoimmune hepatitis. Given list is: SPRED2, TTLL5, TLR1, ALDH1A2, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047874.3982425}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/decaea2231c59b39ab6a8e360461daad/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/decaea2231c59b39ab6a8e360461daad/output.pkl Binary files differnew file mode 100644 index 0000000..89526f2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/decaea2231c59b39ab6a8e360461daad/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df07d18f264073838638e6c63284ba98/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df07d18f264073838638e6c63284ba98/metadata.json new file mode 100644 index 0000000..3fa5e69 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df07d18f264073838638e6c63284ba98/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5487277507781982, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with breast carcinoma and male breast cancer. Given list is: rs11651755, rs9271588, rs2472493, rs3803662, rs4459895'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050453.8528116}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df07d18f264073838638e6c63284ba98/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df07d18f264073838638e6c63284ba98/output.pkl Binary files differnew file mode 100644 index 0000000..c7c091b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df07d18f264073838638e6c63284ba98/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df26adae7ca5f26cb548b8773343d765/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df26adae7ca5f26cb548b8773343d765/metadata.json new file mode 100644 index 0000000..b6e57e1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df26adae7ca5f26cb548b8773343d765/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6183207035064697, "input_args": {"instruction": "\"Context: Disease Barrett's esophagus associates Gene CRTC1. Variant rs13259457 associates Disease Barrett's esophagus. Variant rs10080150 associates Disease Barrett's esophagus. Variant rs66725070 associates Disease Barrett's esophagus. Variant rs10108511 associates Disease Barrett's esophagus. Variant rs4676893 associates Disease Barrett's esophagus. Variant rs139606545 associates Disease Barrett's esophagus. Variant rs11789015 associates Disease Barrett's esophagus.. Variant rs62423175 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene CTHRC1. Variant rs17451754 associates Disease Barrett's esophagus. Variant rs9257809 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene ASCC1. Variant rs10419226 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene FH. Variant rs10982622 associates Disease Barrett's esophagus. Variant rs112894788 associates Disease Barrett's esophagus. Variant rs199620551 associates Disease Barrett's esophagus. Variant rs2003476 associates Disease Barrett's esophagus. Disease Barrett's esophagus associates Gene GDF7. Disease Barrett's esophagus associates Gene MYH11. Variant rs2880866 associates Disease Barrett's esophagus. Variant rs2464469 associates Disease Barrett's esophagus. Gene MIR429 associates Disease Barrett's esophagus. Disease esophagus adenocarcinoma associates Gene CFTR. Disease esophagus adenocarcinoma associates Gene KHDRBS2. Variant rs76014404 associates Disease esophagus adenocarcinoma. Gene MIR106B associates Disease esophagus adenocarcinoma. Variant rs2188554 associates Disease esophagus adenocarcinoma. Variant rs9823696 associates Disease esophagus adenocarcinoma. Disease esophagus adenocarcinoma associates Gene GDF7. Gene MIR16-2 associates Disease esophagus adenocarcinoma. Variant rs75783973 associates Disease esophagus adenocarcinoma. Disease esophagus adenocarcinoma associates Gene TPPP. Gene MIR944 associates Disease esophagus adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with Barrett's esophagus and esophagus adenocarcinoma. Given list is: HLA-DQB1, CRTC1, HLA-B, CFH, MYBPC3\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989882.3299098}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df26adae7ca5f26cb548b8773343d765/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df26adae7ca5f26cb548b8773343d765/output.pkl Binary files differnew file mode 100644 index 0000000..c65bcd6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df26adae7ca5f26cb548b8773343d765/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df948d6ff5ac8bfd01ae625c7635c25f/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df948d6ff5ac8bfd01ae625c7635c25f/metadata.json new file mode 100644 index 0000000..2376963 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df948d6ff5ac8bfd01ae625c7635c25f/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5987882614135742, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myelodysplastic syndrome and Takayasu's arteritis. Given list is: BTN3A1, AKAP6, CACNA2D1, HLA-B, CACNA1A\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989827.101079}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df948d6ff5ac8bfd01ae625c7635c25f/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df948d6ff5ac8bfd01ae625c7635c25f/output.pkl Binary files differnew file mode 100644 index 0000000..a9021b1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df948d6ff5ac8bfd01ae625c7635c25f/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df9d0a51b715b6ae127c74437159eaba/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df9d0a51b715b6ae127c74437159eaba/metadata.json new file mode 100644 index 0000000..864ab62 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df9d0a51b715b6ae127c74437159eaba/metadata.json @@ -0,0 +1 @@ +{"duration": 0.611746072769165, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with skin sensitivity to sun and age-related hearing impairment. Given list is: rs61815704, rs4149909, rs36001488, rs1333047, rs1126809'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758049110.9818783}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df9d0a51b715b6ae127c74437159eaba/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df9d0a51b715b6ae127c74437159eaba/output.pkl Binary files differnew file mode 100644 index 0000000..a8305d4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/df9d0a51b715b6ae127c74437159eaba/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfbbb7d65cc82aeae7cbcf364e642f83/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfbbb7d65cc82aeae7cbcf364e642f83/metadata.json new file mode 100644 index 0000000..610ff5a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfbbb7d65cc82aeae7cbcf364e642f83/metadata.json @@ -0,0 +1 @@ +{"duration": 0.37713027000427246, "input_args": {"instruction": "'Context: Variant rs876660821 associates Disease lung small cell carcinoma. Variant rs116427960 associates Disease lung small cell carcinoma. Variant rs876660754 associates Disease lung small cell carcinoma. Variant rs587782329 associates Disease lung small cell carcinoma. Variant rs587782082 associates Disease lung small cell carcinoma. Variant rs148924904 associates Disease lung small cell carcinoma. Variant rs886039484 associates Disease lung small cell carcinoma. Disease lung small cell carcinoma associates Gene NSD1. Variant rs876658468 associates Disease lung small cell carcinoma. Variant rs55853698 associates Disease lung small cell carcinoma. Variant rs11540652 associates Disease lung small cell carcinoma. Variant rs864622237 associates Disease lung small cell carcinoma. Variant rs483352697 associates Disease lung small cell carcinoma. Variant rs985033810 associates Disease lung small cell carcinoma. Variant rs1057519985 associates Disease lung small cell carcinoma. Variant rs1057519989 associates Disease lung small cell carcinoma. Gene MIR143 associates Disease lung small cell carcinoma. Variant rs530941076 associates Disease lung small cell carcinoma. Variant rs753660142 associates Disease lung small cell carcinoma. Gene MIR29B1 associates Disease lung small cell carcinoma. Variant rs121913295 associates Disease lung small cell carcinoma. Variant rs193920774 associates Disease lung small cell carcinoma. Variant rs121909229 associates Disease lung small cell carcinoma. Variant rs1057520006 associates Disease lung small cell carcinoma. Variant rs28934576 associates Disease lung small cell carcinoma. Variant rs1057520001 associates Disease lung small cell carcinoma. Variant rs121913274 associates Disease lung small cell carcinoma. Variant rs121913275 associates Disease lung small cell carcinoma. Variant rs1057520003 associates Disease lung small cell carcinoma. Gene MIR324 associates Disease lung small cell carcinoma. Variant rs1057520005 associates Disease lung small cell carcinoma. Gene MIR155 associates Disease lung small cell carcinoma. Variant rs11571833 associates Disease lung small cell carcinoma. Disease lung small cell carcinoma associates Gene SETD2. Variant rs121913297 associates Disease lung small cell carcinoma. Variant rs121434592 associates Disease lung small cell carcinoma. Variant rs1057519990 associates Disease lung small cell carcinoma. Disease opiate dependence associates Gene HTR1B. Variant rs1557219 associates Disease opiate dependence. Variant rs2460187 associates Disease opiate dependence. Disease opiate dependence associates Gene COMT. Disease opiate dependence associates Gene ADGRV1. Variant rs2366929 associates Disease opiate dependence. Variant rs2030272 associates Disease opiate dependence. Variant rs12442183 associates Disease opiate dependence. Variant rs1970606 associates Disease opiate dependence. Variant rs2460186 associates Disease opiate dependence. Variant rs10799590 associates Disease opiate dependence. Variant rs201123820 associates Disease opiate dependence. Disease opiate dependence associates Gene CYP2B6. Disease opiate dependence associates Gene BDNF. Disease opiate dependence associates Gene PDYN. Disease opiate dependence associates Gene DRD4. Variant rs2443067 associates Disease opiate dependence. Variant rs2443066 associates Disease opiate dependence. Variant rs2443065 associates Disease opiate dependence. Disease opiate dependence associates Gene GABRG1. Variant rs2443064 associates Disease opiate dependence. \\nQuestion: Out of the given list, which Gene is associated with lung small cell carcinoma and opiate dependence. Given list is: CFH, CLPTM1L, TERT, FAT3, ADGRV1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989526.4751809}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfbbb7d65cc82aeae7cbcf364e642f83/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfbbb7d65cc82aeae7cbcf364e642f83/output.pkl Binary files differnew file mode 100644 index 0000000..2aa0c6b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfbbb7d65cc82aeae7cbcf364e642f83/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc155b510f8fbf5c0245e7d1a440b77/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc155b510f8fbf5c0245e7d1a440b77/metadata.json new file mode 100644 index 0000000..8749aac --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc155b510f8fbf5c0245e7d1a440b77/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5547261238098145, "input_args": {"instruction": "'Context: Disease ankylosing spondylitis associates Gene HLA-B. Disease ankylosing spondylitis associates Gene IL6R. Disease ankylosing spondylitis associates Gene TNFRSF1A. Disease ankylosing spondylitis associates Gene SAA1. Disease ankylosing spondylitis associates Gene IL1A. Variant rs1250550 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL27. Disease ankylosing spondylitis associates Gene SAA2. Variant rs6556416 associates Disease ankylosing spondylitis. Variant rs11616188 associates Disease ankylosing spondylitis. Variant rs4676410 associates Disease ankylosing spondylitis. Gene MIR10B associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL23R. Gene MIR146A associates Disease ankylosing spondylitis. Variant rs1801274 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL12B. Variant rs4552569 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL17A. Disease ankylosing spondylitis associates Gene IL1R1. Disease ankylosing spondylitis associates Gene MEFV. Variant rs4349859 associates Disease ankylosing spondylitis. Variant rs117486637 associates Disease ankylosing spondylitis. Gene MIR29A associates Disease ankylosing spondylitis. Variant rs35164067 associates Disease ankylosing spondylitis. Variant rs41299637 associates Disease ankylosing spondylitis. Variant rs116488202 associates Disease ankylosing spondylitis. Variant rs11065898 associates Disease ankylosing spondylitis. Variant rs17095830 associates Disease ankylosing spondylitis. Variant rs2910686 associates Disease ankylosing spondylitis. Variant rs2836883 associates Disease ankylosing spondylitis. Variant rs6759298 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene IL1R2. Variant rs2531875 associates Disease ankylosing spondylitis. Variant rs9901869 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene CDC37. Variant rs13001372 associates Disease ankylosing spondylitis. Variant rs12141575 associates Disease ankylosing spondylitis. Disease ankylosing spondylitis associates Gene STAT3. Disease ankylosing spondylitis associates Gene USP8. Variant HLA-B*2705 associates Disease ankylosing spondylitis. Variant rs12615545 associates Disease ankylosing spondylitis. Variant rs8070463 associates Disease ankylosing spondylitis. Variant rs1860545 associates Disease ankylosing spondylitis. Variant rs30187 x rs116488202 associates Disease ankylosing spondylitis. Variant rs11209026 associates Disease ankylosing spondylitis. Variant rs11624293 associates Disease ankylosing spondylitis. Variant HLA-B*2702 associates Disease ankylosing spondylitis. Variant rs5771069 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TNFSF15. Variant rs4656958 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene STAT4. Variant rs2858829 associates Disease ulcerative colitis. Variant rs2111485 associates Disease ulcerative colitis. Variant rs12568930 associates Disease ulcerative colitis. Variant rs200349593 associates Disease ulcerative colitis. Variant rs6088765 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SPATA48. Variant rs41291790 associates Disease ulcerative colitis. Variant rs2201841 associates Disease ulcerative colitis. Variant rs9268853 associates Disease ulcerative colitis. Variant rs1830610 associates Disease ulcerative colitis. Variant rs11676348 associates Disease ulcerative colitis. Variant rs528766038 associates Disease ulcerative colitis. Variant rs1182188 associates Disease ulcerative colitis. Variant rs113010081 associates Disease ulcerative colitis. Variant rs886774 associates Disease ulcerative colitis. Variant rs661054 associates Disease ulcerative colitis. Variant rs12261843 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene HLA-DQA1. Variant rs56167332 associates Disease ulcerative colitis. Variant rs2823286 associates Disease ulcerative colitis. Variant rs113307843 associates Disease ulcerative colitis. Variant rs113986290 associates Disease ulcerative colitis. Variant rs55838263 associates Disease ulcerative colitis. Variant rs11581607 associates Disease ulcerative colitis. Variant rs11742570 associates Disease ulcerative colitis. Variant rs4246905 associates Disease ulcerative colitis. Variant rs4380874 associates Disease ulcerative colitis. Variant rs4722672 associates Disease ulcerative colitis. Variant rs2838519 associates Disease ulcerative colitis. Variant rs12946510 associates Disease ulcerative colitis. Variant rs12942547 associates Disease ulcerative colitis. Variant rs9263739 associates Disease ulcerative colitis. Variant rs4065985 associates Disease ulcerative colitis. Variant rs2155219 associates Disease ulcerative colitis. Variant rs6667605 associates Disease ulcerative colitis. Variant rs9268877 associates Disease ulcerative colitis. Variant rs2918392 associates Disease ulcerative colitis. Variant rs2836878 associates Disease ulcerative colitis. Variant rs4957048 associates Disease ulcerative colitis. Variant rs117506082 associates Disease ulcerative colitis. Variant rs2413583 associates Disease ulcerative colitis. Variant rs9858542 associates Disease ulcerative colitis. Variant rs11083840 associates Disease ulcerative colitis. Variant rs6584283 associates Disease ulcerative colitis. Variant rs4728142 associates Disease ulcerative colitis. Variant rs145568234 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene SEMA6D. Variant rs4510766 associates Disease ulcerative colitis. Variant rs3197999 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene WAS. Disease ulcerative colitis associates Gene SFMBT1. Variant rs6679677 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene TNFRSF6B. Variant rs3812565 associates Disease ulcerative colitis. Variant rs4409764 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene ADCY7. Variant rs2189234 associates Disease ulcerative colitis. Variant rs13048533 associates Disease ulcerative colitis. Variant rs1521186 associates Disease ulcerative colitis. Variant rs12149608 associates Disease ulcerative colitis. Gene MIR29A associates Disease ulcerative colitis. Variant rs3194051 associates Disease ulcerative colitis. Variant rs6911490 associates Disease ulcerative colitis. Variant rs35675666 associates Disease ulcerative colitis. Variant rs4151657 associates Disease ulcerative colitis. Variant rs13003464 associates Disease ulcerative colitis. Disease ulcerative colitis associates Gene IL23R. Variant rs1893217 associates Disease ulcerative colitis. Variant rs78534766 associates Disease ulcerative colitis. Variant rs17207986 associates Disease ulcerative colitis. Variant rs11739663 associates Disease ulcerative colitis. \\nQuestion: Out of the given list, which Gene is associated with ankylosing spondylitis and ulcerative colitis. Given list is: KIT, SAMM50, IL23R, PSCA, HLA-DQB1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989886.3794968}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc155b510f8fbf5c0245e7d1a440b77/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc155b510f8fbf5c0245e7d1a440b77/output.pkl Binary files differnew file mode 100644 index 0000000..d2db4f8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc155b510f8fbf5c0245e7d1a440b77/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc71158b4b9a3ea49d6cc6470e161ac/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc71158b4b9a3ea49d6cc6470e161ac/metadata.json new file mode 100644 index 0000000..777a01d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc71158b4b9a3ea49d6cc6470e161ac/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8258817195892334, "input_args": {"instruction": "'Context: Variant rs9461741 associates Disease marginal zone lymphoma. Disease marginal zone lymphoma associates Gene BTNL2. Variant rs16947122 associates Disease marginal zone lymphoma. Variant rs1364229 associates Disease marginal zone lymphoma. Variant rs2922994 associates Disease marginal zone lymphoma. Disease marginal zone lymphoma isa Disease B-cell lymphoma. Disease ontology identifier of marginal zone lymphoma is DOID:0050748. Disease marginal zone lymphoma resembles Disease histiocytosis. Disease marginal zone lymphoma resembles Disease lymphoplasmacytic lymphoma. Disease marginal zone lymphoma resembles Disease plasma cell neoplasm. Disease mantle cell lymphoma resembles Disease marginal zone lymphoma. Variant rs116446171 associates Disease diffuse large B-cell lymphoma. Variant rs13255292 associates Disease diffuse large B-cell lymphoma. Gene MIR5586 associates Disease diffuse large B-cell lymphoma. Variant rs79480871 associates Disease diffuse large B-cell lymphoma. Variant rs2523607 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma associates Gene HLA-B. Gene MIR520C associates Disease diffuse large B-cell lymphoma. Gene MIR129-2 associates Disease diffuse large B-cell lymphoma. Gene MIR129-1 associates Disease diffuse large B-cell lymphoma. Gene MIR520D associates Disease diffuse large B-cell lymphoma. Variant rs4733601 associates Disease diffuse large B-cell lymphoma. Gene MIR19B1 associates Disease diffuse large B-cell lymphoma. Gene MIR455 associates Disease diffuse large B-cell lymphoma. Gene MIR126 associates Disease diffuse large B-cell lymphoma. Gene MIR96 associates Disease diffuse large B-cell lymphoma. Gene MIR222 associates Disease diffuse large B-cell lymphoma. Gene MIR511 associates Disease diffuse large B-cell lymphoma. Gene MIR20A associates Disease diffuse large B-cell lymphoma. Gene MIR1236 associates Disease diffuse large B-cell lymphoma. Gene MIR224 associates Disease diffuse large B-cell lymphoma. Gene MIR200C associates Disease diffuse large B-cell lymphoma. Gene MIR223 associates Disease diffuse large B-cell lymphoma. Gene MIR155 associates Disease diffuse large B-cell lymphoma. Gene MIR142 associates Disease diffuse large B-cell lymphoma. Gene MIR146B associates Disease diffuse large B-cell lymphoma. Gene MIR19A associates Disease diffuse large B-cell lymphoma. Gene MIR150 associates Disease diffuse large B-cell lymphoma. Gene MIR127 associates Disease diffuse large B-cell lymphoma. Gene MIR198 associates Disease diffuse large B-cell lymphoma. Gene MIR130A associates Disease diffuse large B-cell lymphoma. Gene MIR197 associates Disease diffuse large B-cell lymphoma. Gene MIR17 associates Disease diffuse large B-cell lymphoma. Gene MIR28 associates Disease diffuse large B-cell lymphoma. Gene MIR125A associates Disease diffuse large B-cell lymphoma. Gene MIR18A associates Disease diffuse large B-cell lymphoma. Gene MIR10A associates Disease diffuse large B-cell lymphoma. Gene MIR214 associates Disease diffuse large B-cell lymphoma. Gene MIR21 associates Disease diffuse large B-cell lymphoma. Gene MIR221 associates Disease diffuse large B-cell lymphoma. Gene MIR147B associates Disease diffuse large B-cell lymphoma. Gene MIR147A associates Disease diffuse large B-cell lymphoma. Gene MIR296 associates Disease diffuse large B-cell lymphoma. Disease diffuse large B-cell lymphoma presents Symptom Arthralgia.. Gene MIR339 associates Disease diffuse large B-cell lymphoma. Gene MIR34A associates Disease diffuse large B-cell lymphoma. Gene MIR342 associates Disease diffuse large B-cell lymphoma. \\nQuestion: Out of the given list, which Gene is associated with marginal zone lymphoma and diffuse large B-cell lymphoma. Given list is: FHOD3, PBX2, RP1, KALRN, AHR'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048297.6943007}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc71158b4b9a3ea49d6cc6470e161ac/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc71158b4b9a3ea49d6cc6470e161ac/output.pkl Binary files differnew file mode 100644 index 0000000..251c5da --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/dfc71158b4b9a3ea49d6cc6470e161ac/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e06f582edb000db171dd9afb7bd0d04d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e06f582edb000db171dd9afb7bd0d04d/metadata.json new file mode 100644 index 0000000..32e0265 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e06f582edb000db171dd9afb7bd0d04d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5044150352478027, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and cervix carcinoma. Given list is: CLPTM1L, STAT3, HLA-DQA1, ABO, HLA-DPB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989823.4260275}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e06f582edb000db171dd9afb7bd0d04d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e06f582edb000db171dd9afb7bd0d04d/output.pkl Binary files differnew file mode 100644 index 0000000..30bde72 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e06f582edb000db171dd9afb7bd0d04d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e0cd83bc4f364a25e3420712e1c946e8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e0cd83bc4f364a25e3420712e1c946e8/metadata.json new file mode 100644 index 0000000..ca2398d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e0cd83bc4f364a25e3420712e1c946e8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.46637487411499023, "input_args": {"instruction": "'Context: Variant rs2294008 associates Disease atrophic gastritis.. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene NFKB1. Disease atrophic gastritis associates Gene CDH1. Disease atrophic gastritis associates Gene KRAS. Disease atrophic gastritis associates Gene LRBA. Disease atrophic gastritis associates Gene IFIH1. Disease atrophic gastritis associates Gene CTLA4. Gene MIR155 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene IL1RN. Disease atrophic gastritis associates Gene PSCA. Disease atrophic gastritis associates Gene IL1B. Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene PRKAA1. Disease gastric fundus cancer associates Gene TTC33. Disease gastric fundus cancer associates Gene DEFB121. Disease gastric fundus cancer associates Gene NPIPB2. \\nQuestion: Out of the given list, which Variant is associated with atrophic gastritis and gastric fundus cancer. Given list is: rs2294008, rs9257809, rs35705950, rs12539707, rs2738048'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048991.824882}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e0cd83bc4f364a25e3420712e1c946e8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e0cd83bc4f364a25e3420712e1c946e8/output.pkl Binary files differnew file mode 100644 index 0000000..0cdc09d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e0cd83bc4f364a25e3420712e1c946e8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e13592e6b5ed0aa215e4094174c18da4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e13592e6b5ed0aa215e4094174c18da4/metadata.json new file mode 100644 index 0000000..30b1876 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e13592e6b5ed0aa215e4094174c18da4/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4716951847076416, "input_args": {"instruction": "'Context: Disease neurotic disorder associates Gene SOX6. Disease neurotic disorder associates Gene TNXB. Disease neurotic disorder associates Gene NOS1. Variant rs9952522 associates Disease neurotic disorder. Variant rs11608355 associates Disease neurotic disorder. Disease neurotic disorder associates Gene TMEM106B. Disease neurotic disorder associates Gene CTTNBP2. Variant rs35982947 associates Disease neurotic disorder. Variant rs12903563 associates Disease neurotic disorder. Variant rs11509880 associates Disease neurotic disorder. Variant rs56403421 associates Disease neurotic disorder. Disease neurotic disorder associates Gene PLCL2. Variant rs57838764 associates Disease neurotic disorder. Variant rs56226325 associates Disease neurotic disorder. Disease neurotic disorder associates Gene ASXL3. Variant rs11665070 associates Disease neurotic disorder. Variant rs8097041 associates Disease neurotic disorder. Variant rs4977844 associates Disease neurotic disorder. Variant rs10497655 associates Disease neurotic disorder. Disease neurotic disorder associates Gene PTCH1. Variant rs1028321 associates Disease neurotic disorder. Variant rs56084168 associates Disease neurotic disorder. Variant rs12938775 associates Disease neurotic disorder. Variant rs1002656 associates Disease neurotic disorder. Variant rs1542212 associates Disease neurotic disorder. Variant rs4561025 associates Disease neurotic disorder. Variant rs35738585 associates Disease neurotic disorder. Disease neurotic disorder associates Gene YLPM1. Disease neurotic disorder associates Gene PAFAH1B1. Variant rs11090045 associates Disease neurotic disorder. Variant rs10032297 associates Disease neurotic disorder. Disease neurotic disorder associates Gene PAX6. Variant rs11250117 associates Disease neurotic disorder. Variant rs2148254 associates Disease neurotic disorder. Variant rs4413518 associates Disease neurotic disorder. Variant rs13102162 associates Disease neurotic disorder. Variant rs28377268 associates Disease neurotic disorder. Variant rs3741475 associates Disease neurotic disorder. Variant rs73167875 associates Disease neurotic disorder. Disease neurotic disorder associates Gene DNM3. Disease neurotic disorder associates Gene MYO1H. Variant rs10896636 associates Disease neurotic disorder. Variant rs6743916 associates Disease neurotic disorder. Variant rs6976111 associates Disease neurotic disorder. Variant rs12466146 associates Disease neurotic disorder. Variant rs62062288 associates Disease neurotic disorder. Variant rs7567451 associates Disease neurotic disorder. Disease neurotic disorder associates Gene GLIS3. Disease neurotic disorder associates Gene FAM120A. Variant rs4140799 associates Disease neurotic disorder. Variant rs2071754 associates Disease neurotic disorder. Variant rs2210903 associates Disease neurotic disorder. Variant rs7869969 associates Disease neurotic disorder. Variant rs34796300 associates Disease neurotic disorder. Variant rs10144845 associates Disease neurotic disorder. Disease neurotic disorder associates Gene LINGO1. Variant rs297343 associates Disease neurotic disorder. Variant rs2921036 associates Disease neurotic disorder. Variant rs13226841 associates Disease neurotic disorder. Variant rs2380937 associates Disease neurotic disorder. Disease ontology identifier of neurotic disorder is DOID:4964. Variant rs12145171 associates Disease neurotic disorder. Variant rs9272219 associates Disease neuromyelitis optica. Variant rs28383224 associates Disease neuromyelitis optica. Variant HLA-B*08:01 associates Disease neuromyelitis optica. Variant HLA-DQA1*05:01 associates Disease neuromyelitis optica. Variant HLA-DQB1*02:01 associates Disease neuromyelitis optica. Variant HLA-C*07:01 associates Disease neuromyelitis optica. Variant rs1150757 associates Disease neuromyelitis optica. Variant HLA-DRB1*03:01 associates Disease neuromyelitis optica.. Disease neuromyelitis optica associates Gene HLA-DQA1. Disease ontology identifier of neuromyelitis optica is DOID:8869. Disease neuromyelitis optica isa Disease spinal cord disease. Disease neuromyelitis optica presents Symptom Neuralgia. Disease neuromyelitis optica isa Disease autoimmune disease of central nervous system. Disease neuromyelitis optica localizes Anatomy spinal cord. Disease neuromyelitis optica presents Symptom Paraplegia. Disease neuromyelitis optica presents Symptom Vision Disorders. Compound SATRALIZUMAB treats Disease neuromyelitis optica. Disease neuromyelitis optica isa Disease autoimmune disease of peripheral nervous system. Disease neuromyelitis optica presents Symptom Neck Pain. \\nQuestion: Out of the given list, which Gene is associated with neurotic disorder and neuromyelitis optica. Given list is: STAT4, LACC1, TNXB, UMPS, SFRP4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989947.1195328}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e13592e6b5ed0aa215e4094174c18da4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e13592e6b5ed0aa215e4094174c18da4/output.pkl Binary files differnew file mode 100644 index 0000000..fedf326 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e13592e6b5ed0aa215e4094174c18da4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e181d02d8c30747fa0d62c097636d0fe/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e181d02d8c30747fa0d62c097636d0fe/metadata.json new file mode 100644 index 0000000..2daf7ff --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e181d02d8c30747fa0d62c097636d0fe/metadata.json @@ -0,0 +1 @@ +{"duration": 0.37236976623535156, "input_args": {"instruction": "'Context: Disease psoriasis 1 associates Gene HLA-C.. Disease ontology identifier of psoriasis 4 is DOID:0111280. Disease psoriasis 13 associates Gene TRAF3IP2.. Disease psoriasis associates Gene HLA-B. Disease psoriasis associates Gene HLA-DQB1. Disease psoriasis associates Gene HLA-DRB1. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs1960278 x rs4947314 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis. Disease psoriasis associates Gene BCL11B. Variant rs1265079 x rs4358666 associates Disease psoriasis. Variant rs12191877 x rs6075938 associates Disease psoriasis. Variant rs2844624 x rs2523619 associates Disease psoriasis. Variant rs1265078 x rs12191877 associates Disease psoriasis. Variant rs2524052 x rs4947314 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs1265067 x rs4358666 associates Disease psoriasis. Variant rs12660883 x rs2524052 associates Disease psoriasis. Variant rs12191877 x rs2844502 associates Disease psoriasis. Disease psoriasis associates Gene MFSD4B. Variant rs4349859 x rs10484554 associates Disease psoriasis. Variant rs12191877 x rs13202464 associates Disease psoriasis. Variant rs1265114 x rs4358666 associates Disease psoriasis. Variant rs13203895 x rs4418214 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs4795067 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant rs11652075 associates Disease psoriasis 2. Variant rs11653893 associates Disease psoriasis 2.. Variant rs281875215 associates Disease psoriasis 2. Variant rs281875213 associates Disease psoriasis 2. \\nQuestion: Out of the given list, which Gene is associated with psoriasis and diffuse large B-cell lymphoma. Given list is: PTPRD, XBP1, BRCA2, DMRT1, HLA-B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988422.3131933}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e181d02d8c30747fa0d62c097636d0fe/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e181d02d8c30747fa0d62c097636d0fe/output.pkl Binary files differnew file mode 100644 index 0000000..eaa8405 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e181d02d8c30747fa0d62c097636d0fe/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e2b830e639ce2cd3b2cf8dc224cad448/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e2b830e639ce2cd3b2cf8dc224cad448/metadata.json new file mode 100644 index 0000000..5586003 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e2b830e639ce2cd3b2cf8dc224cad448/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6507079601287842, "input_args": {"instruction": "'Context: Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene BRCA2. Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TGFBR2. Variant rs1801591 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Variant rs1920116 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene MMP23B. Variant rs2157719 associates Disease central nervous system cancer. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TUBB. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene EPHB2. Variant rs498872 associates Disease central nervous system cancer. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene ZBTB16. Variant rs891835 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CREBBP. Variant rs8753 associates Disease central nervous system cancer. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KCNAB2. Disease central nervous system cancer associates Gene GPR161. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BAP1. Variant rs648044 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CDKN1B. Disease central nervous system cancer associates Gene BDNF. Disease central nervous system cancer associates Gene TMEM106B. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene MBD4. Variant rs10069690 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RB1. Disease central nervous system cancer associates Gene KIF1B. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene FAM149B1. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene CHEK2. Disease central nervous system cancer associates Gene RTEL1. Disease central nervous system cancer associates Gene TRAF7. Variant rs12230172 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene BMPR1A. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene BRD4. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene OFD1. Variant rs1412829 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ADAMTS3. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene TREM2. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene EDN3. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene CDKN2B. Disease central nervous system cancer associates Gene RET. Disease central nervous system cancer associates Gene RUNX1. Disease central nervous system cancer associates Gene TMEM216. Variant rs4809324 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CCBE1. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene KIAA0753. Disease central nervous system cancer associates Gene YY1. Disease central nervous system cancer associates Gene FAT4. Disease central nervous system cancer associates Gene ALX1. Disease estrogen-receptor negative breast cancer associates Gene BABAM1. Variant rs3215401 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TERT. Variant rs17350191 associates Disease estrogen-receptor negative breast cancer. Variant rs188691509 associates Disease estrogen-receptor negative breast cancer. Disease estrogen-receptor negative breast cancer associates Gene TNRC6B. Variant rs17356907 associates Disease estrogen-receptor negative breast cancer. Variant rs11571833 associates Disease estrogen-receptor negative breast cancer. Variant rs13365225 associates Disease estrogen-receptor negative breast cancer. Variant rs56069439 associates Disease estrogen-receptor negative breast cancer. Variant rs67397200 associates Disease estrogen-receptor negative breast cancer. Variant rs149934734 associates Disease estrogen-receptor negative breast cancer. Variant rs11374964 associates Disease estrogen-receptor negative breast cancer. Variant rs4784227 associates Disease estrogen-receptor negative breast cancer. Variant rs67931591 associates Disease estrogen-receptor negative breast cancer. Variant rs4245739 associates Disease estrogen-receptor negative breast cancer. Variant rs17489300 associates Disease estrogen-receptor negative breast cancer. Variant rs16857609 associates Disease estrogen-receptor negative breast cancer. Variant rs851981 associates Disease estrogen-receptor negative breast cancer. Variant rs66823261 associates Disease estrogen-receptor negative breast cancer. Variant rs11155804 associates Disease estrogen-receptor negative breast cancer. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and estrogen-receptor negative breast cancer. Given list is: BABAM1, ABO, TERT, PHACTR1, DTNB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048002.320161}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e2b830e639ce2cd3b2cf8dc224cad448/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e2b830e639ce2cd3b2cf8dc224cad448/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e2b830e639ce2cd3b2cf8dc224cad448/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e38549b0f5793168df876a6a33bae1d7/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e38549b0f5793168df876a6a33bae1d7/metadata.json new file mode 100644 index 0000000..a6bbb80 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e38549b0f5793168df876a6a33bae1d7/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6336510181427002, "input_args": {"instruction": "'Context: Variant rs12037447 associates Disease Kawasaki disease. Variant rs146732504 associates Disease Kawasaki disease. Variant rs35393613 associates Disease Kawasaki disease. Variant rs4813003 associates Disease Kawasaki disease. Variant rs2857151 associates Disease Kawasaki disease. Variant rs1801274 associates Disease Kawasaki disease. Variant rs2857602 associates Disease Kawasaki disease. Variant rs1883832 associates Disease Kawasaki disease. Variant rs3129960 associates Disease Kawasaki disease. Variant rs4774175 associates Disease Kawasaki disease. Variant rs28493229 associates Disease Kawasaki disease.. Variant rs2849322 associates Disease Kawasaki disease. Variant rs1873212 associates Disease Kawasaki disease. Variant rs2254546 associates Disease Kawasaki disease. Variant rs6671847 associates Disease Kawasaki disease. Variant rs2720378 associates Disease Kawasaki disease. Variant rs2071473 associates Disease Kawasaki disease. Variant rs1264516 associates Disease Kawasaki disease. Variant rs3745213 associates Disease Kawasaki disease. Variant rs1569723 associates Disease Kawasaki disease. Variant rs2130392 associates Disease Kawasaki disease. Variant rs2233152 associates Disease Kawasaki disease. Variant rs4692386 associates Disease inflammatory bowel disease. Variant rs4946717 associates Disease inflammatory bowel disease. Variant rs4656958 associates Disease inflammatory bowel disease. Variant rs4676410 associates Disease inflammatory bowel disease. Variant rs11677953 associates Disease inflammatory bowel disease. Variant rs5743626 associates Disease inflammatory bowel disease. Variant rs568879359 associates Disease inflammatory bowel disease. Variant rs4409764 associates Disease inflammatory bowel disease. Variant rs12654812 associates Disease inflammatory bowel disease. Variant rs12585310 associates Disease inflammatory bowel disease. Variant rs4246215 associates Disease inflammatory bowel disease. Variant rs371608920 associates Disease inflammatory bowel disease. Variant rs5743289 associates Disease inflammatory bowel disease. Variant rs2179070 associates Disease inflammatory bowel disease. Variant rs8049439 associates Disease inflammatory bowel disease. Variant rs5763767 associates Disease inflammatory bowel disease. Variant rs4246905 associates Disease inflammatory bowel disease. Variant rs11743851 associates Disease inflammatory bowel disease. Variant rs145922845 associates Disease inflammatory bowel disease. Variant rs146951811 associates Disease inflammatory bowel disease. Variant rs4380874 associates Disease inflammatory bowel disease. Variant rs3766920 associates Disease inflammatory bowel disease. Variant rs6863411 associates Disease inflammatory bowel disease. Variant rs11581607 associates Disease inflammatory bowel disease. Variant rs6708413 associates Disease inflammatory bowel disease. Variant rs35164067 associates Disease inflammatory bowel disease. Variant rs4676408 associates Disease inflammatory bowel disease. Variant rs6871626 associates Disease inflammatory bowel disease. Variant rs142738614 associates Disease inflammatory bowel disease. Variant rs67289879 associates Disease inflammatory bowel disease. Variant rs35675666 associates Disease inflammatory bowel disease. Variant rs2945412 associates Disease inflammatory bowel disease. Variant rs11741861 associates Disease inflammatory bowel disease. Variant rs4795397 associates Disease inflammatory bowel disease. Variant rs11681525 associates Disease inflammatory bowel disease. Variant rs5843596 associates Disease inflammatory bowel disease. Variant rs11641016 associates Disease inflammatory bowel disease. Variant rs6856616 associates Disease inflammatory bowel disease. Variant rs11742570 associates Disease inflammatory bowel disease. Variant rs11768365 associates Disease inflammatory bowel disease. Variant rs9557207 associates Disease inflammatory bowel disease. Variant rs4703855 associates Disease inflammatory bowel disease. Variant rs3766606 associates Disease inflammatory bowel disease. Variant rs34779708 associates Disease inflammatory bowel disease. Variant rs4256018 associates Disease inflammatory bowel disease. Variant rs6568421 associates Disease inflammatory bowel disease. Variant rs16953946 associates Disease inflammatory bowel disease. Variant rs12568930 associates Disease inflammatory bowel disease. Variant rs4976646 associates Disease inflammatory bowel disease. Variant rs3776414 associates Disease inflammatory bowel disease. Variant rs886057005 associates Disease inflammatory bowel disease. Variant rs6740847 associates Disease inflammatory bowel disease. Variant rs6556412 associates Disease inflammatory bowel disease. Variant rs59536457 associates Disease inflammatory bowel disease. Variant rs746523858 associates Disease inflammatory bowel disease. Variant rs2076756 associates Disease inflammatory bowel disease. Variant rs760677075 associates Disease inflammatory bowel disease. Variant rs11672983 associates Disease inflammatory bowel disease. Variant rs376787667 associates Disease inflammatory bowel disease. Variant rs4845604 associates Disease inflammatory bowel disease. Variant rs1893217 associates Disease inflammatory bowel disease. Variant rs6592362 associates Disease inflammatory bowel disease. Variant rs11554257 associates Disease inflammatory bowel disease. Variant rs6671847 associates Disease inflammatory bowel disease. Variant rs12942547 associates Disease inflammatory bowel disease. Variant rs116392568 associates Disease inflammatory bowel disease. Variant rs4899554 associates Disease inflammatory bowel disease. Variant rs6651252 associates Disease inflammatory bowel disease. Variant rs12946510 associates Disease inflammatory bowel disease. Variant rs11614178 associates Disease inflammatory bowel disease. Variant rs6058869 associates Disease inflammatory bowel disease. Variant rs1250546 associates Disease inflammatory bowel disease. Variant rs2274351 associates Disease inflammatory bowel disease. Variant rs56167332 associates Disease inflammatory bowel disease. Variant rs6586030 associates Disease inflammatory bowel disease. \\nQuestion: Out of the given list, which Variant is associated with Kawasaki disease and inflammatory bowel disease. Given list is: rs573872, rs2072499, rs1333040, rs1801274, rs3757318'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048864.2324543}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e38549b0f5793168df876a6a33bae1d7/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e38549b0f5793168df876a6a33bae1d7/output.pkl Binary files differnew file mode 100644 index 0000000..d417436 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e38549b0f5793168df876a6a33bae1d7/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4006871f89376ab770a1b2f2e71dab8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4006871f89376ab770a1b2f2e71dab8/metadata.json new file mode 100644 index 0000000..7e02a29 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4006871f89376ab770a1b2f2e71dab8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5497424602508545, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with rheumatic heart disease and oropharynx cancer. Given list is: PLA2G6, HLA-DQB1, IL23R, FAM13A, ADH1B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047876.9688692}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4006871f89376ab770a1b2f2e71dab8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4006871f89376ab770a1b2f2e71dab8/output.pkl Binary files differnew file mode 100644 index 0000000..99e47cd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4006871f89376ab770a1b2f2e71dab8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4393ec7b9cc3c5eec02d7c9567a189a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4393ec7b9cc3c5eec02d7c9567a189a/metadata.json new file mode 100644 index 0000000..e96a0fa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4393ec7b9cc3c5eec02d7c9567a189a/metadata.json @@ -0,0 +1 @@ +{"duration": 1.2760136127471924, "input_args": {"instruction": "'Context: Gene HLA-DQB2 marker Disease breast cancer. Variant rs116481522 associates Disease breast cancer. Variant rs151327241 associates Disease breast cancer. Variant rs149328018 associates Disease breast cancer. Variant rs151198586 associates Disease breast cancer. Variant rs149827260 associates Disease breast cancer. Variant rs538280815 associates Disease breast cancer. Variant rs1565532289 associates Disease breast cancer. Variant rs81002806 associates Disease breast cancer. Variant rs149759218 associates Disease breast cancer. Variant rs1057519895 associates Disease breast cancer. Variant rs1567808616 associates Disease breast cancer. Variant rs539960851 associates Disease breast cancer. Variant rs81002867 associates Disease breast cancer. Variant rs116735828 associates Disease breast cancer. Variant rs1565455938 associates Disease breast cancer. Variant rs555200296 associates Disease breast cancer. Variant rs968150359 associates Disease breast cancer. Variant rs61748181 associates Disease breast cancer. Variant rs63750027 associates Disease breast cancer. Variant rs576081828 associates Disease breast cancer. Variant rs1057519816 associates Disease breast cancer. Variant rs1057519862 associates Disease breast cancer. Variant rs56091799 associates Disease breast cancer. Variant rs81002827 associates Disease breast cancer. Variant rs1057519825 associates Disease breast cancer. Gene CLDN11 marker Disease breast cancer. Variant rs81002804 associates Disease breast cancer. Variant rs200310662 associates Disease breast cancer. Variant rs587781593 associates Disease breast cancer. Variant rs1057519826 associates Disease breast cancer. Variant rs81002814 associates Disease breast cancer. Variant rs11571769 associates Disease breast cancer. Variant rs587781296 associates Disease breast cancer. Disease estrogen-receptor negative breast cancer isa Disease breast cancer. Variant rs967461896 associates Disease breast cancer. Variant rs1057519892 associates Disease breast cancer. Variant rs1566219362 associates Disease breast cancer. Variant rs1057519914 associates Disease breast cancer. Variant rs1057519998 associates Disease breast cancer. Variant rs12721593 associates Disease breast cancer. Variant rs1057519980 associates Disease breast cancer. Variant rs149402012 associates Disease breast cancer. Variant rs149633775 associates Disease breast cancer. Variant rs1057519714 associates Disease breast cancer. Variant rs81002812 associates Disease breast cancer. Variant rs1057519890 associates Disease breast cancer. Variant rs587781525 associates Disease breast cancer. Variant rs555381912 associates Disease breast cancer. Variant rs1057519915 associates Disease breast cancer. Variant rs62625298 associates Disease breast cancer. Variant rs1057519854 associates Disease breast cancer. Variant rs63750998 associates Disease breast cancer. Variant rs1057521598 associates Disease breast cancer. Variant rs149182949 associates Disease breast cancer. Variant rs1057521268 associates Disease breast cancer. Variant rs587781294 associates Disease breast cancer. Variant rs1057524418 associates Disease breast cancer. Variant rs587782818 associates Disease breast cancer. Variant rs587782062 associates Disease breast cancer. Variant rs369561166 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs149331537 associates Disease breast cancer. Variant rs1057519975 associates Disease breast cancer. Variant rs149769332 associates Disease breast cancer. Variant rs80116829 associates Disease breast cancer. Variant rs1562636721 associates Disease breast cancer. Variant rs144984153 associates Disease breast cancer. Variant rs1057519952 associates Disease breast cancer. Variant rs149636614 associates Disease breast cancer. Variant rs587780726 associates Disease breast cancer. Variant rs1057519715 associates Disease breast cancer. Variant rs61755173 associates Disease breast cancer. Variant rs587781614 associates Disease breast cancer. Variant rs1057519983 associates Disease breast cancer. Disease squamous cell carcinoma associates Gene BRCA2. Disease squamous cell carcinoma associates Gene HLA-DQA1. Disease squamous cell carcinoma associates Gene HERC2. Disease squamous cell carcinoma associates Gene MMP1. Disease squamous cell carcinoma associates Gene CYP1B1. Variant rs10810657 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene EPB41L1. Disease squamous cell carcinoma associates Gene OCA2. Variant rs149906873 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene CHEK2. Disease squamous cell carcinoma associates Gene CDKN2A. Disease squamous cell carcinoma associates Gene DDB2. Disease squamous cell carcinoma associates Gene TP53. Variant rs35063026 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene DTNBP1. Variant rs4268748 associates Disease squamous cell carcinoma. Variant rs1805007 associates Disease squamous cell carcinoma. Variant rs11571833 associates Disease squamous cell carcinoma. Gene MIR485 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene FDPS. Disease squamous cell carcinoma associates Gene ERCC2. Variant rs16891982 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene KRT5. Disease squamous cell carcinoma associates Gene GJB2. Variant rs62246017 associates Disease squamous cell carcinoma. Variant rs1460816 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene COL14A1. Variant rs6059655 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene LRFN2. Gene MIR149 associates Disease squamous cell carcinoma. Variant rs12203592 associates Disease squamous cell carcinoma. Variant rs9383064 associates Disease squamous cell carcinoma. Gene MIR363 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene ERCC4. Disease squamous cell carcinoma associates Gene KRT14. Disease squamous cell carcinoma associates Gene FOXP1. Disease squamous cell carcinoma associates Gene COL17A1. Variant rs74664507 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene AHR. Variant rs267598140 associates Disease squamous cell carcinoma. Variant rs11707807 associates Disease squamous cell carcinoma. Variant rs121913230 associates Disease squamous cell carcinoma. Gene MIR10B associates Disease squamous cell carcinoma. Variant rs4455710 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene GTF2E2. Gene MIR193A associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene TNFRSF10B. Gene MIR494 associates Disease squamous cell carcinoma. Variant rs121913431 associates Disease squamous cell carcinoma. Variant rs62209647 associates Disease squamous cell carcinoma. Variant rs35324266 associates Disease squamous cell carcinoma. Variant rs8063761 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene PSENEN. Disease squamous cell carcinoma associates Gene MVD. Disease squamous cell carcinoma associates Gene NUTM1. Variant rs1246946 associates Disease squamous cell carcinoma. Gene MIR92B associates Disease squamous cell carcinoma. Gene MIR497 associates Disease squamous cell carcinoma. Gene MIR192 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene ERCC3. Disease squamous cell carcinoma associates Gene POLH. Variant rs17879961 associates Disease squamous cell carcinoma. Variant rs13301660 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene LPP. Variant rs6791479 associates Disease squamous cell carcinoma. Variant rs2494938 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene CTSC. Disease squamous cell carcinoma associates Gene BNC2. Disease squamous cell carcinoma associates Gene DKC1. Disease squamous cell carcinoma associates Gene IRF4. Disease squamous cell carcinoma associates Gene CIB1. Disease squamous cell carcinoma associates Gene XPA. Variant rs35407 associates Disease squamous cell carcinoma. Variant rs1800407 associates Disease squamous cell carcinoma. Gene MIR142 associates Disease squamous cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and squamous cell carcinoma. Given list is: BRCA2, CLDN14, HLA-DPB1, HLA-DQB1, MTTP'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048063.1147332}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4393ec7b9cc3c5eec02d7c9567a189a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4393ec7b9cc3c5eec02d7c9567a189a/output.pkl Binary files differnew file mode 100644 index 0000000..3264883 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4393ec7b9cc3c5eec02d7c9567a189a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4428003c0a57a1567512f67c20b123e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4428003c0a57a1567512f67c20b123e/metadata.json new file mode 100644 index 0000000..f97beb3 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4428003c0a57a1567512f67c20b123e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6825850009918213, "input_args": {"instruction": "'Context: Disease psoriasis 1 associates Gene HLA-C.. Disease psoriasis associates Gene HLA-B. Variant rs13203895 x rs4349859 associates Disease psoriasis. Variant rs2853952 x rs13202464 associates Disease psoriasis. Variant rs76956521 x rs13203895 associates Disease psoriasis. Variant rs4358666 x rs9267464 associates Disease psoriasis. Variant rs75851973 x rs13203895 associates Disease psoriasis. Variant rs2853952 x rs9468932 associates Disease psoriasis. Variant chr6: 159506600 associates Disease psoriasis. Variant rs6911408 x rs9468932 associates Disease psoriasis. Variant chr6: 20689945 associates Disease psoriasis. Variant chr1: 152591953 associates Disease psoriasis. Variant rs9262498 x rs12191877 associates Disease psoriasis. Variant rs13203895 x rs45533135 associates Disease psoriasis. Variant chr1: 8286009 associates Disease psoriasis. Variant rs45533135 x rs9267464 associates Disease psoriasis. Variant rs9262498 x rs1265078 associates Disease psoriasis. Variant rs6931633 x rs2853935 associates Disease psoriasis. Variant rs6911408 x rs2853953 associates Disease psoriasis. Variant rs6911408 x rs2523619 associates Disease psoriasis. Variant rs4358666 x rs9468992 associates Disease psoriasis. Variant chr5: 96118852 associates Disease psoriasis. Disease psoriasis associates Gene HLA-DRB1. Variant rs4358666 x rs6916062 associates Disease psoriasis. Gene MIR369 associates Disease psoriasis. Variant rs28894086 x rs3130517 associates Disease psoriasis. Variant rs9262492 x rs12191877 associates Disease psoriasis. Variant rs2853952 x rs2523535 associates Disease psoriasis. Variant rs28894086 x rs1265078 associates Disease psoriasis. Variant rs9366778 x rs4959062 associates Disease psoriasis. Variant chr18: 51816394 associates Disease psoriasis. Disease psoriasis 13 associates Gene TRAF3IP2.. Disease ontology identifier of psoriasis 4 is DOID:0111280. Disease psoriasis 7 associates Gene IL23R.. \\nQuestion: Out of the given list, which Gene is associated with psoriasis and herpes zoster. Given list is: MIF, HLA-B, PLA2G6, SCN1A, KITLG'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988419.2289004}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4428003c0a57a1567512f67c20b123e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4428003c0a57a1567512f67c20b123e/output.pkl Binary files differnew file mode 100644 index 0000000..860c877 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e4428003c0a57a1567512f67c20b123e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e447907f9462aab74245d506aaf234b3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e447907f9462aab74245d506aaf234b3/metadata.json new file mode 100644 index 0000000..eb2010a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e447907f9462aab74245d506aaf234b3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.749213695526123, "input_args": {"instruction": "'Context: Variant rs4766578 associates Disease vitiligo. Variant rs35161626 associates Disease vitiligo. Variant rs9271597 associates Disease vitiligo. Variant rs12203592 associates Disease vitiligo. Variant rs5952553 associates Disease vitiligo. Variant rs12421615 associates Disease vitiligo. Variant rs59374417 associates Disease vitiligo. Variant rs4268748 associates Disease vitiligo. Variant rs3814231 associates Disease vitiligo. Variant rs145954018 associates Disease vitiligo.. Variant rs6059655 associates Disease vitiligo. Variant rs12771452 associates Disease vitiligo. Variant rs4908760 associates Disease vitiligo. Variant rs13076312 associates Disease vitiligo. Variant rs117744081 associates Disease vitiligo. Variant rs13136820 associates Disease vitiligo. Variant rs638893 associates Disease vitiligo. Variant rs3806156 associates Disease vitiligo. Variant rs1393350 associates Disease vitiligo. Variant rs11079035 associates Disease vitiligo. Variant rs2456973 associates Disease vitiligo. Variant rs9468925 associates Disease vitiligo. Variant rs757850683 associates Disease vitiligo. Variant rs2476601 associates Disease vitiligo. Variant rs561079 associates Disease vitiligo. Variant rs4308124 associates Disease vitiligo. Variant rs6012953 associates Disease vitiligo. Variant rs11966200 associates Disease vitiligo. Variant rs6583331 associates Disease vitiligo. Variant rs4822024 associates Disease vitiligo. Variant rs12482904 associates Disease vitiligo. Variant rs8192917 associates Disease vitiligo. Variant rs11021232 associates Disease vitiligo. Variant rs2111485 associates Disease vitiligo. Variant rs2236313 associates Disease vitiligo. Variant rs41342147 associates Disease vitiligo. Variant rs16872571 associates Disease vitiligo. Variant rs60131261 associates Disease vitiligo. Variant rs3823355 associates Disease vitiligo. Variant rs4409785 associates Disease vitiligo. Variant rs2017445 associates Disease vitiligo. Variant rs1635168 associates Disease vitiligo. Variant rs9926296 associates Disease vitiligo. Variant rs8083511 associates Disease vitiligo. Variant rs1464510 associates Disease vitiligo. Variant rs35860234 associates Disease vitiligo. Variant rs78521699 associates Disease vitiligo. Variant rs1126809 associates Disease vitiligo. Variant rs3757247 associates Disease vitiligo. Variant rs34346645 associates Disease vitiligo. Variant rs16843742 associates Disease vitiligo. Variant rs11574914 associates Disease rheumatoid arthritis. Variant rs12379034 associates Disease rheumatoid arthritis. Variant rs4602043 associates Disease rheumatoid arthritis. Variant rs35139284 associates Disease rheumatoid arthritis. Variant rs4936059 associates Disease rheumatoid arthritis. Variant rs9268839 associates Disease rheumatoid arthritis. Variant rs12467084 associates Disease rheumatoid arthritis. Variant rs6705628 associates Disease rheumatoid arthritis. Variant rs9275428 associates Disease rheumatoid arthritis. Variant rs138790505 associates Disease rheumatoid arthritis. Variant rs149041927 associates Disease rheumatoid arthritis. Variant rs113066392 associates Disease rheumatoid arthritis. Variant rs11594656 associates Disease rheumatoid arthritis. Variant rs12506688 associates Disease rheumatoid arthritis. Variant rs80202727 associates Disease rheumatoid arthritis. Variant rs2203098 associates Disease rheumatoid arthritis. Variant rs34030880 associates Disease rheumatoid arthritis. Variant rs35156883 associates Disease rheumatoid arthritis. Variant rs10797431 associates Disease rheumatoid arthritis. Variant rs13192471 associates Disease rheumatoid arthritis. Variant rs73194058 associates Disease rheumatoid arthritis. Variant rs1557787212 associates Disease rheumatoid arthritis. Variant rs72634030 associates Disease rheumatoid arthritis. Variant rs9939427 associates Disease rheumatoid arthritis. Variant rs1355208 associates Disease rheumatoid arthritis. Variant rs6910071 associates Disease rheumatoid arthritis. Variant rs6920220 associates Disease rheumatoid arthritis. Variant rs775728920 associates Disease rheumatoid arthritis. Variant rs9943599 associates Disease rheumatoid arthritis. Variant rs56139217 associates Disease rheumatoid arthritis. Variant rs9269234 associates Disease rheumatoid arthritis. Variant rs147622113 associates Disease rheumatoid arthritis. Variant rs9296015 associates Disease rheumatoid arthritis. Variant rs4305317 associates Disease rheumatoid arthritis. Variant rs77331626 associates Disease rheumatoid arthritis. Variant rs142469968 associates Disease rheumatoid arthritis. Variant rs1547233 associates Disease rheumatoid arthritis. Variant rs10790268 associates Disease rheumatoid arthritis. Variant rs3806624 associates Disease rheumatoid arthritis. Variant rs199894206 associates Disease rheumatoid arthritis. Variant rs1566328963 associates Disease rheumatoid arthritis. Variant rs9693589 associates Disease rheumatoid arthritis. Variant rs11203367 associates Disease rheumatoid arthritis. Variant rs9603618 associates Disease rheumatoid arthritis. Variant rs35677470 associates Disease rheumatoid arthritis. Variant rs13103285 associates Disease rheumatoid arthritis. Variant rs3184504 associates Disease rheumatoid arthritis. Variant rs4602367 associates Disease rheumatoid arthritis. Variant rs56095903 associates Disease rheumatoid arthritis. Variant rs9603616 associates Disease rheumatoid arthritis. Variant rs2306848 associates Disease rheumatoid arthritis. Variant rs111469885 associates Disease rheumatoid arthritis. Variant rs35926684 associates Disease rheumatoid arthritis. Variant rs12413578 associates Disease rheumatoid arthritis. Variant rs8043085 associates Disease rheumatoid arthritis. Variant rs42034 associates Disease rheumatoid arthritis. Variant rs11933540 associates Disease rheumatoid arthritis. Variant rs1005753 associates Disease rheumatoid arthritis. Variant rs12525220 associates Disease rheumatoid arthritis. Variant rs3802604 associates Disease rheumatoid arthritis. Variant rs11203366 associates Disease rheumatoid arthritis. Variant rs11915402 associates Disease rheumatoid arthritis. Variant rs6859219 associates Disease rheumatoid arthritis. Variant rs58721818 associates Disease rheumatoid arthritis. Variant rs149253747 associates Disease rheumatoid arthritis. Variant rs8032939 associates Disease rheumatoid arthritis. Variant rs6712515 associates Disease rheumatoid arthritis. Variant rs59578717 associates Disease rheumatoid arthritis. Variant rs1217403 associates Disease rheumatoid arthritis. Variant rs4622308 associates Disease rheumatoid arthritis. Variant rs58107865 associates Disease rheumatoid arthritis. Variant rs9979383 associates Disease rheumatoid arthritis. Variant rs2201584 associates Disease rheumatoid arthritis. Variant rs1044690 associates Disease rheumatoid arthritis. Variant rs7749323 associates Disease rheumatoid arthritis. \\nQuestion: Out of the given list, which Variant is associated with vitiligo and rheumatoid arthritis. Given list is: rs12203592, rs10103692, rs78378222, rs2476601, rs1150757'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048870.197132}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e447907f9462aab74245d506aaf234b3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e447907f9462aab74245d506aaf234b3/output.pkl Binary files differnew file mode 100644 index 0000000..0aba2da --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e447907f9462aab74245d506aaf234b3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e49c08a3b04caff59f68fdc51ef9cc64/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e49c08a3b04caff59f68fdc51ef9cc64/metadata.json new file mode 100644 index 0000000..c550e27 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e49c08a3b04caff59f68fdc51ef9cc64/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6717557907104492, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung carcinoma and central nervous system cancer. Given list is: C9, GNE, CDKAL1, TERT, PTPN22'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048803.6993372}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e49c08a3b04caff59f68fdc51ef9cc64/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e49c08a3b04caff59f68fdc51ef9cc64/output.pkl Binary files differnew file mode 100644 index 0000000..08fab33 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e49c08a3b04caff59f68fdc51ef9cc64/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e60539d0b48c7d810217ff9b21084cf2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e60539d0b48c7d810217ff9b21084cf2/metadata.json new file mode 100644 index 0000000..05a4f74 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e60539d0b48c7d810217ff9b21084cf2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4328427314758301, "input_args": {"instruction": "'Context: Variant rs1057520013 associates Disease pancreatic cancer. Variant rs1057520011 associates Disease pancreatic cancer. Disease pancreatic cancer associates Gene TERT. Variant rs786202134 associates Disease pancreatic cancer. Gene MIR451B associates Disease pancreatic cancer. Variant rs756231248 associates Disease pancreatic cancer. Gene MIR4644 associates Disease pancreatic cancer. Gene MIR3976 associates Disease pancreatic cancer. Disease pancreatic cancer associates Gene MGMT. Gene MIR4455 associates Disease pancreatic cancer. Gene MIR101-2 associates Disease pancreatic cancer. Disease pancreatic cancer associates Gene RTEL1. Disease pancreatic cancer associates Gene CDKN2C. Gene MIR101-1 associates Disease pancreatic cancer. Disease pancreatic cancer associates Gene SLC12A3. Disease pancreatic cancer associates Gene MITF. Gene MIR429 associates Disease pancreatic cancer. Gene MIR26A1 associates Disease pancreatic cancer. Disease pancreatic cancer associates Gene COL14A1. Disease pancreatic cancer associates Gene CDKN2B. Disease pancreatic cancer associates Gene CDKN1A. Disease pancreatic cancer associates Gene CDKN1B. Disease pancreatic cancer associates Gene TYMS. Disease pancreatic cancer associates Gene MAFA. Gene MIR628 associates Disease pancreatic cancer. Gene MIR124-3 associates Disease pancreatic cancer. Gene MIR625 associates Disease pancreatic cancer. Gene MIR425 associates Disease pancreatic cancer. Gene MIR16-2 associates Disease pancreatic cancer. Gene MIR182 associates Disease pancreatic cancer. Variant rs543259829 associates Disease pancreatic carcinoma. Variant rs60579835 associates Disease pancreatic carcinoma. Variant rs121913529 associates Disease pancreatic carcinoma. Variant rs121913049 associates Disease pancreatic carcinoma. Variant rs121434220 associates Disease pancreatic carcinoma. Variant rs397518442 associates Disease pancreatic carcinoma. Variant rs1555162597 associates Disease pancreatic carcinoma. Variant rs41286296 associates Disease pancreatic carcinoma. Variant rs886059211 associates Disease pancreatic carcinoma. Variant rs121434388 associates Disease pancreatic carcinoma. Variant rs879254095 associates Disease pancreatic carcinoma. Variant rs397518443 associates Disease pancreatic carcinoma. Variant rs397514495 associates Disease pancreatic carcinoma. Variant rs41293511 associates Disease pancreatic carcinoma. Variant rs121912661 associates Disease pancreatic carcinoma. Variant rs555607708 associates Disease pancreatic carcinoma. Variant rs1568205026 associates Disease pancreatic carcinoma. Variant rs9581943 associates Disease pancreatic carcinoma. Variant rs9543325 associates Disease pancreatic carcinoma. Variant rs886038068 associates Disease pancreatic carcinoma. Variant rs66562280 associates Disease pancreatic carcinoma. Variant rs6971499 associates Disease pancreatic carcinoma. Variant rs1553986519 associates Disease pancreatic carcinoma. Variant rs587776650 associates Disease pancreatic carcinoma. Variant rs139770721 associates Disease pancreatic carcinoma. Variant rs2255280 associates Disease pancreatic carcinoma. Variant rs398064261 associates Disease pancreatic carcinoma. Variant rs886059208 associates Disease pancreatic carcinoma. Variant rs5768709 associates Disease pancreatic carcinoma. Variant rs121913322 associates Disease pancreatic carcinoma. Disease opisthorchiasis isa Disease pancreas disease. Disease pancreatic cancer isa Disease pancreas disease. Disease ontology identifier of pancreas disease is DOID:26. Disease neurohypophyseal diabetes insipidus isa Disease pancreas disease. Gene MIR21 associates Disease pancreatic adenosquamous carcinoma.. Variant rs182571219 associates Disease pancreatic adenocarcinoma. Variant rs121913281 associates Disease pancreatic adenocarcinoma. Variant rs121908291 associates Disease pancreatic adenocarcinoma. Variant rs121913274 associates Disease pancreatic adenocarcinoma. Variant rs121913279 associates Disease pancreatic adenocarcinoma. Variant rs115988233 associates Disease pancreatic adenocarcinoma. Variant rs142116575 associates Disease pancreatic adenocarcinoma. Variant rs121913275 associates Disease pancreatic adenocarcinoma. Variant rs121913412 associates Disease pancreatic adenocarcinoma. Variant rs121913283 associates Disease pancreatic adenocarcinoma. Variant rs864622590 associates Disease pancreatic adenocarcinoma. Variant rs893660432 associates Disease pancreatic adenocarcinoma. Variant rs1318598425 associates Disease pancreatic adenocarcinoma. Variant rs114171764 associates Disease pancreatic adenocarcinoma. Variant rs372708613 associates Disease pancreatic adenocarcinoma. Variant rs925242863 associates Disease pancreatic adenocarcinoma. Variant rs11554273 associates Disease pancreatic adenocarcinoma. Variant rs1311193979 associates Disease pancreatic adenocarcinoma. Variant rs863224702 associates Disease pancreatic adenocarcinoma. Variant rs121913413 associates Disease pancreatic adenocarcinoma. Variant rs121912656 associates Disease pancreatic adenocarcinoma. Variant rs121434498 associates Disease pancreatic adenocarcinoma. Variant rs121912657 associates Disease pancreatic adenocarcinoma. Variant rs121913233 associates Disease pancreatic adenocarcinoma. Variant rs864622087 associates Disease pancreatic adenocarcinoma. Variant rs864622591 associates Disease pancreatic adenocarcinoma. Variant rs121912651 associates Disease pancreatic adenocarcinoma. Variant rs863224703 associates Disease pancreatic adenocarcinoma. Variant rs121913495 associates Disease pancreatic adenocarcinoma. Variant rs866775781 associates Disease pancreatic adenocarcinoma. \\nQuestion: Out of the given list, which Gene is associated with malaria and pancreatic carcinoma. Given list is: ABO, HLA-DPA1, TNRC6B, JAK2, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988486.1613753}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e60539d0b48c7d810217ff9b21084cf2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e60539d0b48c7d810217ff9b21084cf2/output.pkl Binary files differnew file mode 100644 index 0000000..4451ef9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e60539d0b48c7d810217ff9b21084cf2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e63b330df4b00d0a4763df2c1d8933ec/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e63b330df4b00d0a4763df2c1d8933ec/metadata.json new file mode 100644 index 0000000..ab57891 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e63b330df4b00d0a4763df2c1d8933ec/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6679737567901611, "input_args": {"instruction": "'Context: Variant rs12203592 associates Disease uveal melanoma. Variant rs1057519853 associates Disease uveal melanoma. Disease uveal melanoma associates Gene BRAF. Variant rs1057519961 associates Disease uveal melanoma. Disease uveal melanoma associates Gene CYSLTR2. Variant rs1057519742 associates Disease uveal melanoma. Disease uveal melanoma associates Gene IRF4. Variant rs1559588632 associates Disease uveal melanoma. Variant rs452932 associates Disease uveal melanoma. Disease uveal melanoma associates Gene CLPTM1L. Variant rs121913492 associates Disease uveal melanoma. Disease uveal melanoma associates Gene SF3B1. Variant rs370348 associates Disease uveal melanoma. Gene MIR454 associates Disease uveal melanoma. Disease uveal melanoma associates Gene TDP1. Gene MIRLET7B associates Disease uveal melanoma. Disease liver cirrhosis associates Gene MUC5B. Gene MIR571 associates Disease liver cirrhosis. Variant rs200663261 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene CYP7B1. Disease liver cirrhosis associates Gene ATP6AP2. Variant chr9:5073770 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HLA-B. Variant rs2896019 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene MMEL1. Disease liver cirrhosis associates Gene USP53. Disease liver cirrhosis associates Gene ATP6AP1. Disease liver cirrhosis associates Gene GALT. Disease liver cirrhosis associates Gene SMPD1. Gene MIR29B1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene MPV17. Variant rs58542926 associates Disease liver cirrhosis. Gene MIR29B2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PNPLA6. Variant rs4374383 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene HMOX1. Gene MIR513A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC26A9. Disease liver cirrhosis associates Gene TREX1. Variant rs3819290 associates Disease liver cirrhosis. Variant rs3129943 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC9A3. Disease liver cirrhosis associates Gene GLRX5. Disease liver cirrhosis associates Gene SLC6A14. Gene MIR513A2 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene DPM1. Disease liver cirrhosis associates Gene TP53. Disease liver cirrhosis associates Gene ATP7B. Disease liver cirrhosis associates Gene TGFB1. Gene MIR513B associates Disease liver cirrhosis. Gene MIR378A associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC25A13. Disease liver cirrhosis associates Gene SLC51B. Variant rs551625260 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC51A. Disease liver cirrhosis associates Gene PMM2. Gene MIR99A associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene PIK3CA. Disease liver cirrhosis associates Gene RPGRIP1L. Disease liver cirrhosis associates Gene RPGRIP1. Disease liver cirrhosis associates Gene YARS1. Disease liver cirrhosis associates Gene PNPLA3. Disease liver cirrhosis associates Gene SLC7A7. Disease liver cirrhosis associates Gene KIF3B. Variant rs28929474 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene ACVRL1. Disease liver cirrhosis associates Gene GBA1. Gene MIR29C associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene SLC11A1. Disease liver cirrhosis associates Gene OFD1. Disease liver cirrhosis associates Gene CTNNB1. Variant rs12484700 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene EOGT. Gene MIR29A associates Disease liver cirrhosis. Gene MIR513C associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene GPR35. Disease liver cirrhosis associates Gene ARHGAP31. Disease liver cirrhosis associates Gene TNFSF15. Disease liver cirrhosis associates Gene CFAP418. Disease liver cirrhosis associates Gene TERT. Disease liver cirrhosis associates Gene POLG. Disease liver cirrhosis associates Gene TRMT5. Disease liver cirrhosis associates Gene USB1. Disease liver cirrhosis associates Gene ALDH2. Gene MIR200A associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene RTEL1. Gene MIR133A1 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene WDR35. Gene MIR370 associates Disease liver cirrhosis. Disease liver cirrhosis associates Gene GCLC. Variant rs78069066 associates Disease liver cirrhosis. \\nQuestion: Out of the given list, which Gene is associated with uveal melanoma and liver cirrhosis. Given list is: PRX, CACNA2D1, GTF2I, ADGRV1, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048813.392644}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e63b330df4b00d0a4763df2c1d8933ec/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e63b330df4b00d0a4763df2c1d8933ec/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e63b330df4b00d0a4763df2c1d8933ec/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e687cd35f9343257a095e3c149b41e34/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e687cd35f9343257a095e3c149b41e34/metadata.json new file mode 100644 index 0000000..1a3efd0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e687cd35f9343257a095e3c149b41e34/metadata.json @@ -0,0 +1 @@ +{"duration": 0.49450254440307617, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and myeloproliferative neoplasm. Given list is: TERT, NOD2, HLA-DQB1, SAMM50, SFRP4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047999.7753024}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e687cd35f9343257a095e3c149b41e34/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e687cd35f9343257a095e3c149b41e34/output.pkl Binary files differnew file mode 100644 index 0000000..8dba580 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e687cd35f9343257a095e3c149b41e34/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e69767b1d1d2b54e9d1caa6e6e8caa8c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e69767b1d1d2b54e9d1caa6e6e8caa8c/metadata.json new file mode 100644 index 0000000..3813273 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e69767b1d1d2b54e9d1caa6e6e8caa8c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.745708703994751, "input_args": {"instruction": "'Context: Variant rs1559588632 associates Disease uveal melanoma. Variant rs1057519853 associates Disease uveal melanoma. Variant rs1057519742 associates Disease uveal melanoma. Disease uveal melanoma associates Gene HERC2. Variant rs12203592 associates Disease uveal melanoma. Variant rs1057519961 associates Disease uveal melanoma. Disease uveal melanoma associates Gene BRAF. Disease uveal melanoma associates Gene SF3B1. Variant rs370348 associates Disease uveal melanoma. Variant rs452932 associates Disease uveal melanoma. Gene MIR144 associates Disease uveal melanoma. Variant rs121913492 associates Disease uveal melanoma. Gene MIR454 associates Disease uveal melanoma. Gene MIR34A associates Disease uveal melanoma. Gene MIR155 associates Disease uveal melanoma. Disease uveal melanoma associates Gene TDP1. Variant rs1057519830 associates Disease head and neck cancer. Variant rs146795390 associates Disease head and neck cancer. Gene SLC35E2B marker Disease head and neck cancer. Disease head and neck cancer associates Gene CTNNB1. Disease head and neck cancer associates Gene MYH11. Disease head and neck cancer associates Gene HLA-DQB1. Variant rs1453414 associates Disease head and neck cancer. Disease head and neck cancer associates Gene CDKN2A. Variant rs854936 associates Disease head and neck cancer. Disease head and neck cancer associates Gene COL4A6. Variant rs121913344 associates Disease head and neck cancer. Gene MIR363 associates Disease head and neck cancer. Gene MIR1271 associates Disease head and neck cancer. Disease head and neck cancer associates Gene BLM. Gene SLC44A4 marker Disease head and neck cancer. Gene USH1G expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHB. Variant rs121913231 associates Disease head and neck cancer. Variant rs762384959 associates Disease head and neck cancer. Disease head and neck cancer associates Gene MDM2. Disease head and neck cancer associates Gene COL4A5. Gene MIR125B1 associates Disease head and neck cancer. Gene MIR138-1 associates Disease head and neck cancer. Gene SLC6A15 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene SDHC. Gene ALDH3A1 expressedin Disease head and neck cancer. Variant rs16879870 associates Disease head and neck cancer. Disease head and neck cancer associates Gene SDHA. Variant rs3828805 associates Disease head and neck cancer. Gene MIR101-1 associates Disease head and neck cancer. Gene MIR138-2 associates Disease head and neck cancer. Gene MIR125B2 associates Disease head and neck cancer. Gene KRT36 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene ASCC1. Variant rs79767424 associates Disease head and neck cancer. Gene MIR101-2 associates Disease head and neck cancer. Gene MIR100 associates Disease head and neck cancer. Disease head and neck cancer associates Gene ADH1B. Gene MIR27B associates Disease head and neck cancer. Gene MIR26B associates Disease head and neck cancer. Gene PPP1R27 expressedin Disease head and neck cancer. Gene CDH26 expressedin Disease head and neck cancer. Gene KRT34 expressedin Disease head and neck cancer. Gene MIR499A associates Disease head and neck cancer. Gene MIR133A1 associates Disease head and neck cancer. Variant rs77543610 associates Disease head and neck cancer. Gene MIR34A associates Disease head and neck cancer. Gene MIR504 associates Disease head and neck cancer. Gene MIR99A associates Disease head and neck cancer. Gene SLC39A2 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene FH. Gene MIR1-1 associates Disease head and neck cancer. Disease head and neck cancer associates Gene TP53. Variant rs2641256 associates Disease head and neck cancer. Gene MIR143 associates Disease head and neck cancer. Gene MYH1 expressedin Disease head and neck cancer. Gene COL7A1 expressedin Disease head and neck cancer. Gene DNAH17 expressedin Disease head and neck cancer. Gene MIR1-2 associates Disease head and neck cancer. Gene MIR7-1 associates Disease head and neck cancer. Variant rs104886003 associates Disease head and neck cancer. Gene SLC26A9 marker Disease head and neck cancer. Disease head and neck cancer associates Gene PIK3CA. Gene MIR9-1 associates Disease head and neck cancer. Gene MIR491 associates Disease head and neck cancer. Gene SLC15A4 marker Disease head and neck cancer. Gene MIR146B associates Disease head and neck cancer. Gene MYH2 expressedin Disease head and neck cancer. Disease head and neck cancer associates Gene MSR1. Gene MIR302C associates Disease head and neck cancer. Disease head and neck cancer associates Gene FOXE1. Gene MIR455 associates Disease head and neck cancer. Gene MIR155 associates Disease head and neck cancer. Disease head and neck cancer associates Gene COL14A1. Gene GNA15 expressedin Disease head and neck cancer. \\nQuestion: Out of the given list, which Gene is associated with uveal melanoma and head and neck cancer. Given list is: USHBP1, BARD1, GNE, CACNA2D1, SAMM50'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048816.1611626}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e69767b1d1d2b54e9d1caa6e6e8caa8c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e69767b1d1d2b54e9d1caa6e6e8caa8c/output.pkl Binary files differnew file mode 100644 index 0000000..3e748fc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e69767b1d1d2b54e9d1caa6e6e8caa8c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e6d12406e614a20947d3de53092480a3/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e6d12406e614a20947d3de53092480a3/metadata.json new file mode 100644 index 0000000..db34517 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e6d12406e614a20947d3de53092480a3/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6249375343322754, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and triple-receptor negative breast cancer. Given list is: SLC17A4, KITLG, CAPN14, CACNA2D1, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048666.306307}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e6d12406e614a20947d3de53092480a3/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e6d12406e614a20947d3de53092480a3/output.pkl Binary files differnew file mode 100644 index 0000000..501bfb9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e6d12406e614a20947d3de53092480a3/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7979af9c8cd870d08f2aee508610e9b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7979af9c8cd870d08f2aee508610e9b/metadata.json new file mode 100644 index 0000000..cdcd6ff --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7979af9c8cd870d08f2aee508610e9b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5919311046600342, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with squamous cell carcinoma and lung squamous cell carcinoma. Given list is: ARMS2, BRCA2, BTBD9, IL6, ALDH1A2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990184.616319}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7979af9c8cd870d08f2aee508610e9b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7979af9c8cd870d08f2aee508610e9b/output.pkl Binary files differnew file mode 100644 index 0000000..38ab3a4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7979af9c8cd870d08f2aee508610e9b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7ba0f3d5f57b442bb4da824e0275e8c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7ba0f3d5f57b442bb4da824e0275e8c/metadata.json new file mode 100644 index 0000000..c78baf2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7ba0f3d5f57b442bb4da824e0275e8c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7936215400695801, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with dermatomyositis and childhood type dermatomyositis. Given list is: GSDMB, HLA-DQA1, ADH1B, POU5F1B, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048084.472292}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7ba0f3d5f57b442bb4da824e0275e8c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7ba0f3d5f57b442bb4da824e0275e8c/output.pkl Binary files differnew file mode 100644 index 0000000..ea552d2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e7ba0f3d5f57b442bb4da824e0275e8c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8a43c488ff88abf4a08f154cc54df82/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8a43c488ff88abf4a08f154cc54df82/metadata.json new file mode 100644 index 0000000..591b052 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8a43c488ff88abf4a08f154cc54df82/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6528749465942383, "input_args": {"instruction": "'Context: Variant rs6908626 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PTCH1. Variant rs3184504 associates Disease hypothyroidism. Variant rs61759532 associates Disease hypothyroidism. Variant chr14:81143695 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PRKAR1A. Disease hypothyroidism associates Gene BRAF. Variant rs9562955 associates Disease hypothyroidism. Variant rs1266904735 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PIEZO1. Variant rs6992869 associates Disease hypothyroidism. Disease hypothyroidism associates Gene ZFP57. Disease hypothyroidism associates Gene PRKCZ. Disease hypothyroidism associates Gene VAV3. Disease hypothyroidism associates Gene TSHB. Variant rs370475698 associates Disease hypothyroidism. Disease hypothyroidism associates Gene NFATC1. Disease hypothyroidism associates Gene ITGB3. Variant rs113229608 associates Disease hypothyroidism. Variant rs11406335 associates Disease hypothyroidism. Variant rs12582330 associates Disease hypothyroidism. Variant rs78534766 associates Disease hypothyroidism. Variant rs1951459 associates Disease hypothyroidism. Variant rs3850765 associates Disease hypothyroidism. Variant rs7596240 associates Disease hypothyroidism. Disease hypothyroidism associates Gene PIK3CA. Variant rs3118469 associates Disease hypothyroidism. Variant rs78495697 associates Disease hypothyroidism. Variant rs61778693 associates Disease hypothyroidism. Disease hypothyroidism associates Gene NKX2-5. Variant rs13109179 associates Disease hypothyroidism. Disease hypothyroidism associates Gene RASGRP1. Variant rs61101437 associates Disease hypothyroidism. Disease hypothyroidism associates Gene MMP23B. Variant rs57145876 associates Disease hypothyroidism. Variant rs13355543 associates Disease hypothyroidism. Variant rs6833591 associates Disease hypothyroidism. Variant rs12485900 associates Disease hypothyroidism. Variant rs6914622 associates Disease hypothyroidism. Disease hypothyroidism associates Gene XRCC4. Variant rs114378220 associates Disease hypothyroidism. Disease hypothyroidism associates Gene GLI3. Disease hypothyroidism associates Gene PTEN. Disease hypothyroidism associates Gene INPP5B. Variant rs4835534 associates Disease hypothyroidism. Variant rs34536443 associates Disease hypothyroidism. Variant rs142063461 associates Disease hypothyroidism. Disease hypothyroidism associates Gene JAK1. Variant rs113473633 associates Disease hypothyroidism. Variant rs151289341 associates Disease hypothyroidism. Variant rs8054578 associates Disease hypothyroidism. Disease hypothyroidism associates Gene FOXP1. Disease hypothyroidism associates Gene PRDM16. Disease hypothyroidism associates Gene NKX2-1. Variant rs11666808 associates Disease hypothyroidism. Disease hypothyroidism associates Gene HMGA2. Disease hypothyroidism associates Gene PLCH1. Disease hypothyroidism associates Gene TSHR. Variant rs61776678 associates Disease hypothyroidism. Disease hypothyroidism associates Gene TERT. Disease hypothyroidism associates Gene GLI2. Variant rs229540 associates Disease hypothyroidism. Disease hypothyroidism associates Gene FGF13. Variant rs3784099 associates Disease hypothyroidism. Variant rs9273370 associates Disease hypothyroidism. Variant rs114558062 associates Disease hypothyroidism. Variant rs13076468 associates Disease hypothyroidism. Variant rs57033802 associates Disease hypothyroidism. Variant rs587777630 associates Disease hypothyroidism. Variant rs1599795 associates Disease hypothyroidism. Variant rs12482947 associates Disease hypothyroidism. Variant rs143210911 associates Disease hypothyroidism. Variant rs6505765 associates Disease hypothyroidism. Variant rs57938373 associates Disease hypothyroidism. Variant rs61877856 associates Disease hypothyroidism. Disease thyroid gland papillary carcinoma associates Gene NKX2-1. Variant rs6996585 associates Disease thyroid gland papillary carcinoma. Gene MIR369 associates Disease thyroid gland papillary carcinoma. Variant rs148335539 associates Disease thyroid gland papillary carcinoma. Variant rs201958469 associates Disease thyroid gland papillary carcinoma. Variant rs113488022 associates Disease thyroid gland papillary carcinoma. Variant rs12990503 associates Disease thyroid gland papillary carcinoma. Gene MIR551B associates Disease thyroid gland papillary carcinoma. Gene MIR361 associates Disease thyroid gland papillary carcinoma. Gene MIR192 associates Disease thyroid gland papillary carcinoma. Gene MIR623 associates Disease thyroid gland papillary carcinoma. Variant rs9858271 associates Disease thyroid gland papillary carcinoma. Gene MIR135B associates Disease thyroid gland papillary carcinoma. Variant rs751409106 associates Disease thyroid gland papillary carcinoma. Gene MIR595 associates Disease thyroid gland papillary carcinoma. Gene MIR31 associates Disease thyroid gland papillary carcinoma. Gene MIR15A associates Disease thyroid gland papillary carcinoma. Gene MIR141 associates Disease thyroid gland papillary carcinoma. Gene MIR34B associates Disease thyroid gland papillary carcinoma. Gene MIR146B associates Disease thyroid gland papillary carcinoma. Gene MIR4728 associates Disease thyroid gland papillary carcinoma. \\nQuestion: Out of the given list, which Gene is associated with hypothyroidism and thyroid gland papillary carcinoma. Given list is: PRKACB, FAM13A, VAV3, ZFPM2, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989703.4462717}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8a43c488ff88abf4a08f154cc54df82/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8a43c488ff88abf4a08f154cc54df82/output.pkl Binary files differnew file mode 100644 index 0000000..6e5e40b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8a43c488ff88abf4a08f154cc54df82/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8cfde09353b73d908b65af178906759/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8cfde09353b73d908b65af178906759/metadata.json new file mode 100644 index 0000000..536f1f7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8cfde09353b73d908b65af178906759/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6059823036193848, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with opiate dependence and lung small cell carcinoma. Given list is: IL23R, HLA-DQB2, ADGRV1, DLEU7, RBFOX1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048006.8467271}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8cfde09353b73d908b65af178906759/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8cfde09353b73d908b65af178906759/output.pkl Binary files differnew file mode 100644 index 0000000..74020b9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e8cfde09353b73d908b65af178906759/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e92e8d950de339285afb41362de4af36/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e92e8d950de339285afb41362de4af36/metadata.json new file mode 100644 index 0000000..20f970a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e92e8d950de339285afb41362de4af36/metadata.json @@ -0,0 +1 @@ +{"duration": 0.47643351554870605, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with central nervous system cancer and lung carcinoma. Given list is: MYBPC3, GCKR, STAT4, TERT, BTN2A1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048004.7529452}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e92e8d950de339285afb41362de4af36/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e92e8d950de339285afb41362de4af36/output.pkl Binary files differnew file mode 100644 index 0000000..c19f1da --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e92e8d950de339285afb41362de4af36/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e9a99ac2d1cda18ac8e601e93b7e814b/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e9a99ac2d1cda18ac8e601e93b7e814b/metadata.json new file mode 100644 index 0000000..238aec8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e9a99ac2d1cda18ac8e601e93b7e814b/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6291320323944092, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with childhood type dermatomyositis and dermatomyositis. Given list is: FTO, PLA2G6, ATP2B1, GSDMB, BRCA2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047946.3206801}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e9a99ac2d1cda18ac8e601e93b7e814b/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e9a99ac2d1cda18ac8e601e93b7e814b/output.pkl Binary files differnew file mode 100644 index 0000000..a35e591 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/e9a99ac2d1cda18ac8e601e93b7e814b/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eafd9fb3d1c112fdb9ed0689da18eeae/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eafd9fb3d1c112fdb9ed0689da18eeae/metadata.json new file mode 100644 index 0000000..79cb4fa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eafd9fb3d1c112fdb9ed0689da18eeae/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5719187259674072, "input_args": {"instruction": "'Context: Disease autoimmune hepatitis associates Gene HLA-DQB1. Disease autoimmune hepatitis associates Gene HLA-DQA1. Variant rs2187668 associates Disease autoimmune hepatitis. Variant rs6932730 associates Disease autoimmune hepatitis. Variant rs56036302 associates Disease autoimmune hepatitis. Variant rs6809477 associates Disease autoimmune hepatitis. Variant rs3891175 associates Disease autoimmune hepatitis. Variant DQA1*05:01 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene TSBP1. Variant rs1794514 associates Disease autoimmune hepatitis. Disease autoimmune hepatitis associates Gene SYNPR. Gene MIR122 associates Disease autoimmune hepatitis. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene NFKB1. Disease membranous glomerulonephritis associates Gene TCF19. Variant rs1265159 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene FOXP3. Variant rs9272729 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene EGFL8. Disease membranous glomerulonephritis associates Gene JAK1. Variant rs3134945 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene SLC7A7. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs9271573 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene TSBP1. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs2187668 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene POU5F1. Disease membranous glomerulonephritis associates Gene RNF5. Variant rs652888 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. \\nQuestion: Out of the given list, which Gene is associated with autoimmune hepatitis and membranous glomerulonephritis. Given list is: STAT4, HLA-DQA1, TNFSF13, CFH, KITLG'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047682.0031862}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eafd9fb3d1c112fdb9ed0689da18eeae/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eafd9fb3d1c112fdb9ed0689da18eeae/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eafd9fb3d1c112fdb9ed0689da18eeae/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb05b38fb6bb0d57643382879aead10e/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb05b38fb6bb0d57643382879aead10e/metadata.json new file mode 100644 index 0000000..d52facb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb05b38fb6bb0d57643382879aead10e/metadata.json @@ -0,0 +1 @@ +{"duration": 0.8008348941802979, "input_args": {"instruction": "'Context: Disease central nervous system cancer associates Gene ETFA. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene KIAA0753. Variant rs59060240 associates Disease central nervous system cancer. Variant rs6010620 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene RTEL1. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene EGFR. Disease central nervous system cancer associates Gene MMP23B. Variant rs2157719 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene LMNA. Disease central nervous system cancer associates Gene CDKN1B. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TOPORS. Disease central nervous system cancer associates Gene TUBB. Variant rs1920116 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TMEM106B. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene SMARCA4. Variant rs2736100 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SMARCB1. Disease central nervous system cancer associates Gene EDN3. Disease central nervous system cancer associates Gene PIK3CA. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene TCTN3. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene POLR2A. Variant rs35850753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene OCRL. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene ALX1. Disease central nervous system cancer associates Gene COL14A1. Disease central nervous system cancer associates Gene MYO1H. Disease central nervous system cancer associates Gene ZSWIM6. Disease central nervous system cancer associates Gene DICER1. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene SMARCE1. Disease central nervous system cancer associates Gene CREBBP. Disease central nervous system cancer associates Gene CDKN2B. Disease central nervous system cancer associates Gene NOTCH3. Disease central nervous system cancer associates Gene BRCA2. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene SLC25A11. Variant rs12230172 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene MBD4. Variant rs498872 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene LRRC31. Disease central nervous system cancer associates Gene RPS20. Disease central nervous system cancer associates Gene BRD4. Disease central nervous system cancer associates Gene NBN. Disease central nervous system cancer associates Gene KLLN. Disease central nervous system cancer associates Gene ARMC5. Disease central nervous system cancer associates Gene ELP1. Disease central nervous system cancer associates Gene RB1. Disease central nervous system cancer associates Gene RET. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene ALX3. Disease central nervous system cancer associates Gene KRAS. Variant rs8753 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CDKN2C. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene EIF3F. Variant rs2853676 associates Disease central nervous system cancer. Variant rs10069690 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene OFD1. Disease interstitial lung disease associates Gene CSF2RB. Disease interstitial lung disease associates Gene CSF2RA. Disease interstitial lung disease associates Gene NR5A1. Disease interstitial lung disease associates Gene NME8. Disease interstitial lung disease associates Gene SLC6A14. Disease interstitial lung disease associates Gene SLC34A1. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene CCDC103. Disease interstitial lung disease associates Gene BTNL2. Disease interstitial lung disease associates Gene ZMYND10. Disease interstitial lung disease associates Gene CCNO. Disease interstitial lung disease associates Gene MUC5B. Disease interstitial lung disease associates Gene NPC2. Disease interstitial lung disease associates Gene CCDC65. Disease interstitial lung disease associates Gene LRRC34. Disease interstitial lung disease associates Gene NHLRC2. Disease interstitial lung disease associates Gene CCDC39. Disease interstitial lung disease associates Gene SLC34A2. Disease interstitial lung disease associates Gene CCDC40. Gene MIR19A associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SLC26A9. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene DNAL1. Disease interstitial lung disease associates Gene DNAI1. Disease interstitial lung disease associates Gene CCR6. Disease interstitial lung disease associates Gene TERT. Variant rs116906005 associates Disease interstitial lung disease. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene PRTN3. Disease interstitial lung disease associates Gene NSMCE3. Disease interstitial lung disease associates Gene SLC9A3. Disease interstitial lung disease associates Gene COL3A1. Disease interstitial lung disease associates Gene DNAH11. Gene MIR142 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene MUC2. Disease interstitial lung disease associates Gene SERPINA1. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAAF4. Disease interstitial lung disease associates Gene DRC1. Gene MIR200C associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAJB13. Disease interstitial lung disease associates Gene LRRC56. Variant rs2076295 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene FOXJ1. Disease interstitial lung disease associates Gene DNAAF5. Disease interstitial lung disease associates Gene DNAAF3. Disease interstitial lung disease associates Gene DCTN4. Disease interstitial lung disease associates Gene DNAH1. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene DNAAF6. Disease interstitial lung disease associates Gene OFD1. Disease interstitial lung disease associates Gene NEK10. Disease interstitial lung disease associates Gene DNAAF2. Variant rs2034650 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CTC1. Disease interstitial lung disease associates Gene ODAD3. Disease interstitial lung disease associates Gene ODAD1. Disease interstitial lung disease associates Gene DNAH9. Disease interstitial lung disease associates Gene MCIDAS. Variant rs1981997 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene ODAD4. Disease interstitial lung disease associates Gene DNAH5. Disease interstitial lung disease associates Gene CASP10. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene TGFB1. Variant rs6477542 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene GSTM3. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and interstitial lung disease. Given list is: ADGRV1, TENM2, TERT, LRMDA, CCDC33'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047948.9776907}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb05b38fb6bb0d57643382879aead10e/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb05b38fb6bb0d57643382879aead10e/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb05b38fb6bb0d57643382879aead10e/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb7c918d46aea8200b86fe95abc97fe4/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb7c918d46aea8200b86fe95abc97fe4/metadata.json new file mode 100644 index 0000000..e045096 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb7c918d46aea8200b86fe95abc97fe4/metadata.json @@ -0,0 +1 @@ +{"duration": 1.0345780849456787, "input_args": {"instruction": "'Context: Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Variant rs3131060 associates Disease cutaneous lupus erythematosus. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Gene MIR485 associates Disease cutaneous lupus erythematosus. Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene TCN2. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene NFE2L2. Disease immunoglobulin alpha deficiency associates Gene NFKB2. Disease immunoglobulin alpha deficiency associates Gene TNFRSF11A. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease immunoglobulin alpha deficiency associates Gene CTLA4. Disease immunoglobulin alpha deficiency associates Gene TCF3. Variant rs11299600 associates Disease immunoglobulin alpha deficiency. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene ZNF341. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene DCLRE1C. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IRF2BP2. Variant rs1244181 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene RNF168. Disease immunoglobulin alpha deficiency associates Gene GATA3. Disease immunoglobulin alpha deficiency associates Gene IFIH1. Disease immunoglobulin alpha deficiency associates Gene CASP8. Disease immunoglobulin alpha deficiency associates Gene ITCH. \\nQuestion: Out of the given list, which Gene is associated with cutaneous lupus erythematosus and immunoglobulin alpha deficiency. Given list is: DTNB, IL10, TNXB, FAM13A, HLA-DQA1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047938.053058}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb7c918d46aea8200b86fe95abc97fe4/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb7c918d46aea8200b86fe95abc97fe4/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eb7c918d46aea8200b86fe95abc97fe4/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eba0361d7401752255762c9db16f3c98/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eba0361d7401752255762c9db16f3c98/metadata.json new file mode 100644 index 0000000..19601e0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eba0361d7401752255762c9db16f3c98/metadata.json @@ -0,0 +1 @@ +{"duration": 0.45176100730895996, "input_args": {"instruction": "'Context: Variant rs1057519752 associates Disease myeloproliferative neoplasm. Variant rs121913614 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene ATM. Variant rs121913520 associates Disease myeloproliferative neoplasm. Variant rs121913504 associates Disease myeloproliferative neoplasm. Disease myeloproliferative neoplasm associates Gene TERT. Disease myeloproliferative neoplasm associates Gene SH2B3. Disease myeloproliferative neoplasm associates Gene JAK2. Disease myeloproliferative neoplasm associates Gene RUNX1. Variant rs17215231 associates Disease triple-receptor negative breast cancer. Variant rs2464195 associates Disease triple-receptor negative breast cancer. Variant rs78378222 associates Disease triple-receptor negative breast cancer.. \\nQuestion: Out of the given list, which Gene is associated with myeloproliferative neoplasm and triple-receptor negative breast cancer. Given list is: ABO, SCN1A, TERT, TGM2, COL22A1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047830.0237226}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eba0361d7401752255762c9db16f3c98/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eba0361d7401752255762c9db16f3c98/output.pkl Binary files differnew file mode 100644 index 0000000..6e5e40b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/eba0361d7401752255762c9db16f3c98/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec1a1fcb1877c82f6ec58663dff8ab30/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec1a1fcb1877c82f6ec58663dff8ab30/metadata.json new file mode 100644 index 0000000..e71aca9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec1a1fcb1877c82f6ec58663dff8ab30/metadata.json @@ -0,0 +1 @@ +{"duration": 0.452606201171875, "input_args": {"instruction": "\"Context: Variant rs56391007 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene GATA3. Disease Hodgkin's lymphoma associates Gene NCOA5. Gene MIR19B1 associates Disease Hodgkin's lymphoma. Variant rs3806624 associates Disease Hodgkin's lymphoma. Gene MIR196A1 associates Disease Hodgkin's lymphoma. Variant rs6903608 associates Disease Hodgkin's lymphoma. Variant rs7111520 associates Disease Hodgkin's lymphoma. Gene MIR19B2 associates Disease Hodgkin's lymphoma. Variant rs121913527 associates Disease Hodgkin's lymphoma. Variant rs4459895 associates Disease Hodgkin's lymphoma. Variant rs3781093 associates Disease Hodgkin's lymphoma. Variant rs2019960 associates Disease Hodgkin's lymphoma. Variant rs9482849 associates Disease Hodgkin's lymphoma. Variant rs6928977 associates Disease Hodgkin's lymphoma. Variant rs747694886 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene HBS1L. Disease Hodgkin's lymphoma associates Gene TCF3. Disease Hodgkin's lymphoma associates Gene TCF4. Variant rs1432295 associates Disease Hodgkin's lymphoma. Gene MIR19A associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene POU2AF1. Variant rs387906223 associates Disease Hodgkin's lymphoma. Gene MIR9-3 associates Disease Hodgkin's lymphoma. Gene MIR9-1 associates Disease Hodgkin's lymphoma. Variant rs2069757 associates Disease Hodgkin's lymphoma. Variant rs7745098 associates Disease Hodgkin's lymphoma. Variant rs1860661 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene AHI1. Gene MIR510 associates Disease Hodgkin's lymphoma. Variant rs56391007 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene GATA3. Disease Hodgkin's lymphoma associates Gene NCOA5. Gene MIR19B1 associates Disease Hodgkin's lymphoma. Variant rs3806624 associates Disease Hodgkin's lymphoma. Gene MIR196A1 associates Disease Hodgkin's lymphoma. Variant rs6903608 associates Disease Hodgkin's lymphoma. Variant rs7111520 associates Disease Hodgkin's lymphoma. Gene MIR19B2 associates Disease Hodgkin's lymphoma. Variant rs121913527 associates Disease Hodgkin's lymphoma. Variant rs4459895 associates Disease Hodgkin's lymphoma. Variant rs3781093 associates Disease Hodgkin's lymphoma. Variant rs2019960 associates Disease Hodgkin's lymphoma. Variant rs9482849 associates Disease Hodgkin's lymphoma. Variant rs6928977 associates Disease Hodgkin's lymphoma. Variant rs747694886 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene HBS1L. Disease Hodgkin's lymphoma associates Gene TCF3. Disease Hodgkin's lymphoma associates Gene TCF4. Variant rs1432295 associates Disease Hodgkin's lymphoma. Gene MIR19A associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene POU2AF1. Variant rs387906223 associates Disease Hodgkin's lymphoma. Gene MIR9-3 associates Disease Hodgkin's lymphoma. Gene MIR9-1 associates Disease Hodgkin's lymphoma. Variant rs2069757 associates Disease Hodgkin's lymphoma. Variant rs7745098 associates Disease Hodgkin's lymphoma. Variant rs1860661 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene AHI1. Gene MIR510 associates Disease Hodgkin's lymphoma. Disease non-Hodgkin lymphoma associates Gene FOXP1. Variant rs1057519918 associates Disease non-Hodgkin lymphoma. Variant rs121434595 associates Disease non-Hodgkin lymphoma. Variant rs145556724 associates Disease non-Hodgkin lymphoma. Variant rs1057519941 associates Disease non-Hodgkin lymphoma. Variant rs1057519942 associates Disease non-Hodgkin lymphoma. Variant rs1057519909 associates Disease non-Hodgkin lymphoma. Variant chr11:118662993 associates Disease non-Hodgkin lymphoma. Variant rs1057519952 associates Disease non-Hodgkin lymphoma. Variant rs1265080 associates Disease non-Hodgkin lymphoma. Variant rs1057519954 associates Disease non-Hodgkin lymphoma. Variant rs139487723 associates Disease non-Hodgkin lymphoma. Variant rs1057519894 associates Disease non-Hodgkin lymphoma. Variant rs1057520002 associates Disease non-Hodgkin lymphoma. Variant rs121434596 associates Disease non-Hodgkin lymphoma. Variant rs121913355 associates Disease non-Hodgkin lymphoma. Variant rs1057519953 associates Disease non-Hodgkin lymphoma. Variant rs121913338 associates Disease non-Hodgkin lymphoma. Variant rs1057519879 associates Disease non-Hodgkin lymphoma. Variant rs114216685 associates Disease non-Hodgkin lymphoma. Variant rs1057520007 associates Disease non-Hodgkin lymphoma. Variant rs1057520008 associates Disease non-Hodgkin lymphoma. Variant rs121908689 associates Disease non-Hodgkin lymphoma. Variant rs267601395 associates Disease non-Hodgkin lymphoma. Variant rs34102154 associates Disease non-Hodgkin lymphoma. Variant rs267601394 associates Disease non-Hodgkin lymphoma. Variant rs121913357 associates Disease non-Hodgkin lymphoma. Variant rs121912659 associates Disease non-Hodgkin lymphoma. Variant rs1057519877 associates Disease non-Hodgkin lymphoma. Variant rs398122820 associates Disease non-Hodgkin lymphoma. Variant rs56391007 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene GATA3. Disease Hodgkin's lymphoma associates Gene NCOA5. Gene MIR19B1 associates Disease Hodgkin's lymphoma. Variant rs3806624 associates Disease Hodgkin's lymphoma. Gene MIR196A1 associates Disease Hodgkin's lymphoma. Variant rs6903608 associates Disease Hodgkin's lymphoma. Variant rs7111520 associates Disease Hodgkin's lymphoma. Gene MIR19B2 associates Disease Hodgkin's lymphoma. Variant rs121913527 associates Disease Hodgkin's lymphoma. Variant rs4459895 associates Disease Hodgkin's lymphoma. Variant rs3781093 associates Disease Hodgkin's lymphoma. Variant rs2019960 associates Disease Hodgkin's lymphoma. Variant rs9482849 associates Disease Hodgkin's lymphoma. Variant rs6928977 associates Disease Hodgkin's lymphoma. Variant rs747694886 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene HBS1L. Disease Hodgkin's lymphoma associates Gene TCF3. Disease Hodgkin's lymphoma associates Gene TCF4. Variant rs1432295 associates Disease Hodgkin's lymphoma. Gene MIR19A associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene POU2AF1. Variant rs387906223 associates Disease Hodgkin's lymphoma. Gene MIR9-3 associates Disease Hodgkin's lymphoma. Gene MIR9-1 associates Disease Hodgkin's lymphoma. Variant rs2069757 associates Disease Hodgkin's lymphoma. Variant rs7745098 associates Disease Hodgkin's lymphoma. Variant rs1860661 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene AHI1. Gene MIR510 associates Disease Hodgkin's lymphoma. Variant rs56391007 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene GATA3. Disease Hodgkin's lymphoma associates Gene NCOA5. Gene MIR19B1 associates Disease Hodgkin's lymphoma. Variant rs3806624 associates Disease Hodgkin's lymphoma. Gene MIR196A1 associates Disease Hodgkin's lymphoma. Variant rs6903608 associates Disease Hodgkin's lymphoma. Variant rs7111520 associates Disease Hodgkin's lymphoma. Gene MIR19B2 associates Disease Hodgkin's lymphoma. Variant rs121913527 associates Disease Hodgkin's lymphoma. Variant rs4459895 associates Disease Hodgkin's lymphoma. Variant rs3781093 associates Disease Hodgkin's lymphoma. Variant rs2019960 associates Disease Hodgkin's lymphoma. Variant rs9482849 associates Disease Hodgkin's lymphoma. Variant rs6928977 associates Disease Hodgkin's lymphoma. Variant rs747694886 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene HBS1L. Disease Hodgkin's lymphoma associates Gene TCF3. Disease Hodgkin's lymphoma associates Gene TCF4. Variant rs1432295 associates Disease Hodgkin's lymphoma. Gene MIR19A associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene POU2AF1. Variant rs387906223 associates Disease Hodgkin's lymphoma. Gene MIR9-3 associates Disease Hodgkin's lymphoma. Gene MIR9-1 associates Disease Hodgkin's lymphoma. Variant rs2069757 associates Disease Hodgkin's lymphoma. Variant rs7745098 associates Disease Hodgkin's lymphoma. Variant rs1860661 associates Disease Hodgkin's lymphoma. Disease Hodgkin's lymphoma associates Gene AHI1. Gene MIR510 associates Disease Hodgkin's lymphoma. \\nQuestion: Out of the given list, which Gene is associated with Hodgkin's lymphoma and Hodgkin's lymphoma, nodular sclerosis. Given list is: SHTN1, ERAP1, GATA3, XBP1, FTO\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988477.9131036}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec1a1fcb1877c82f6ec58663dff8ab30/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec1a1fcb1877c82f6ec58663dff8ab30/output.pkl Binary files differnew file mode 100644 index 0000000..4d6935d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec1a1fcb1877c82f6ec58663dff8ab30/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec31c018aa60d55eba233a758d9eeb79/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec31c018aa60d55eba233a758d9eeb79/metadata.json new file mode 100644 index 0000000..6c25b88 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec31c018aa60d55eba233a758d9eeb79/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6395461559295654, "input_args": {"instruction": "'Context: Variant rs9272219 associates Disease neuromyelitis optica. Variant HLA-C*07:01 associates Disease neuromyelitis optica. Variant rs1150757 associates Disease neuromyelitis optica. Variant rs28383224 associates Disease neuromyelitis optica. Variant HLA-DQA1*05:01 associates Disease neuromyelitis optica. Disease neuromyelitis optica associates Gene HLA-DQA1. Variant HLA-DQB1*02:01 associates Disease neuromyelitis optica. Variant HLA-B*08:01 associates Disease neuromyelitis optica. Variant HLA-DRB1*03:01 associates Disease neuromyelitis optica.. Disease neuromyelitis optica presents Symptom Neuralgia. Disease neuromyelitis optica isa Disease spinal cord disease. Disease neuromyelitis optica localizes Anatomy central nervous system. Disease ontology identifier of neuromyelitis optica is DOID:8869. Disease neuromyelitis optica isa Disease autoimmune disease of central nervous system. Disease neuromyelitis optica localizes Anatomy spinal cord. Disease neuromyelitis optica presents Symptom Dystonia. Disease neuromyelitis optica presents Symptom Neck Pain. Disease neuromyelitis optica presents Symptom Paraplegia. Disease neuromyelitis optica isa Disease optic nerve disease. Disease neurotic disorder associates Gene CTTNBP2. Disease neurotic disorder associates Gene TNXB. Disease neurotic disorder associates Gene TMEM106B. Disease neurotic disorder associates Gene PLCL2. Variant rs11509880 associates Disease neurotic disorder. Disease neurotic disorder associates Gene SOX6. Disease neurotic disorder associates Gene PTCH1. Variant rs57838764 associates Disease neurotic disorder. Disease neurotic disorder associates Gene PAX6. Disease neurotic disorder associates Gene NOS1. Variant rs11608355 associates Disease neurotic disorder. Variant rs56403421 associates Disease neurotic disorder. Variant rs8097041 associates Disease neurotic disorder. Variant rs10497655 associates Disease neurotic disorder. Variant rs56226325 associates Disease neurotic disorder. Variant rs4977844 associates Disease neurotic disorder. Variant rs11665070 associates Disease neurotic disorder. Disease neurotic disorder associates Gene DNM3. Variant rs9952522 associates Disease neurotic disorder. Variant rs11250117 associates Disease neurotic disorder. Disease neurotic disorder associates Gene ASXL3. Variant rs35982947 associates Disease neurotic disorder. Variant rs11090045 associates Disease neurotic disorder. Variant rs56084168 associates Disease neurotic disorder. Disease neurotic disorder associates Gene FAM120A. Variant rs4561025 associates Disease neurotic disorder. Disease neurotic disorder associates Gene MYO1H. Disease neurotic disorder associates Gene ZC3H7B. Variant rs12903563 associates Disease neurotic disorder. Variant rs1028321 associates Disease neurotic disorder. Variant rs2148254 associates Disease neurotic disorder. Variant rs4413518 associates Disease neurotic disorder. Disease neurotic disorder associates Gene TENM3. Variant rs73167875 associates Disease neurotic disorder. Variant rs10032297 associates Disease neurotic disorder. Variant rs10144845 associates Disease neurotic disorder. Variant rs477860 associates Disease neurotic disorder. Variant rs1002656 associates Disease neurotic disorder. Variant rs10935184 associates Disease neurotic disorder. Variant rs2071754 associates Disease neurotic disorder. Disease neurotic disorder associates Gene YLPM1. Variant rs4140799 associates Disease neurotic disorder. Variant rs7567451 associates Disease neurotic disorder. Variant rs3741475 associates Disease neurotic disorder. Disease neurotic disorder associates Gene PAFAH1B1. Variant rs2210903 associates Disease neurotic disorder. Variant rs1542212 associates Disease neurotic disorder. Variant rs34796300 associates Disease neurotic disorder. Variant rs7107356 associates Disease neurotic disorder. Variant rs2380937 associates Disease neurotic disorder. Variant rs13102162 associates Disease neurotic disorder. Variant rs12145171 associates Disease neurotic disorder. Variant rs12466146 associates Disease neurotic disorder. Variant rs35738585 associates Disease neurotic disorder. Variant rs7772160 associates Disease neurotic disorder. Variant rs7869969 associates Disease neurotic disorder. Variant rs7845515 associates Disease neurotic disorder. Variant rs6976111 associates Disease neurotic disorder. Variant rs12938775 associates Disease neurotic disorder. Variant rs6743916 associates Disease neurotic disorder. Variant rs62062288 associates Disease neurotic disorder. Variant rs10896636 associates Disease neurotic disorder. \\nQuestion: Out of the given list, which Gene is associated with neuromyelitis optica and neurotic disorder. Given list is: TNRC18, PCDH7, CASZ1, GATA3, TNXB'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989893.8248148}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec31c018aa60d55eba233a758d9eeb79/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec31c018aa60d55eba233a758d9eeb79/output.pkl Binary files differnew file mode 100644 index 0000000..369e2b1 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ec31c018aa60d55eba233a758d9eeb79/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecb5950e40c3a73093a994635d2cb603/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecb5950e40c3a73093a994635d2cb603/metadata.json new file mode 100644 index 0000000..122962e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecb5950e40c3a73093a994635d2cb603/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4949474334716797, "input_args": {"instruction": "'Context: Disease dermatomyositis associates Gene HLA-DPB1. Disease dermatomyositis associates Gene HLA-DPA1. Variant HLA_DPB1*17 associates Disease dermatomyositis. Variant rs7750458 associates Disease dermatomyositis. Gene MIR205 associates Disease dermatomyositis. Gene MIR146A associates Disease dermatomyositis. Gene MIR206 associates Disease dermatomyositis. Disease ontology identifier of dermatomyositis is DOID:10223. Disease dermatomyositis presents Symptom Purpura, Thrombotic Thrombocytopenic. Disease dermatomyositis presents Symptom Purpura, Thrombocytopenic. Disease dermatomyositis presents Symptom Purpura. Disease dermatomyositis resembles Disease connective tissue disease.. Disease dermatomyositis resembles Disease mixed connective tissue disease. Disease dermatomyositis presents Symptom Skin Manifestations. Disease polymyositis resembles Disease dermatomyositis. Disease dermatomyositis presents Symptom Myotonia. Disease dermatomyositis presents Symptom Myalgia. Disease dermatomyositis resembles Disease collagen disease. Disease dermatomyositis isa Disease myositis. Disease dermatomyositis presents Symptom Muscle Hypotonia. Disease dermatomyositis resembles Disease polyarteritis nodosa. Disease pulmonary hypertension associates Gene HLA-DRB1. Disease pulmonary hypertension associates Gene HLA-DPA1. Disease pulmonary hypertension associates Gene HLA-B. Disease pulmonary hypertension associates Gene MUC5B. Disease pulmonary hypertension associates Gene MYH7. Disease pulmonary hypertension associates Gene MYH6. Disease pulmonary hypertension associates Gene PGM1. Disease pulmonary hypertension associates Gene KRT8. Variant rs2856830 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene MGP. Disease pulmonary hypertension associates Gene GDF2. Disease pulmonary hypertension associates Gene MYMK. Disease pulmonary hypertension associates Gene TNFSF11. Disease pulmonary hypertension associates Gene COL1A1. Variant rs71427857 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene DEF6. Disease pulmonary hypertension associates Gene NOD2. Disease pulmonary hypertension associates Gene NKX2-5. Disease pulmonary hypertension associates Gene TBX4. Disease pulmonary hypertension associates Gene THSD1. Disease pulmonary hypertension associates Gene FBN1. Disease pulmonary hypertension associates Gene NKX2-1. Variant rs2217560 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene PAM16. Disease pulmonary hypertension associates Gene HSPG2. Disease pulmonary hypertension associates Gene COL1A2. Disease pulmonary hypertension associates Gene ZNF699. Disease pulmonary hypertension associates Gene MYBPC3. Gene MIR503 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene MPL. Disease pulmonary hypertension associates Gene KMT2D. Disease pulmonary hypertension associates Gene IFT56. Disease pulmonary hypertension associates Gene COX1. Disease pulmonary hypertension associates Gene KRT18. Disease pulmonary hypertension associates Gene BANF1. Disease pulmonary hypertension associates Gene SMARCAL1. Gene MIR371B associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene SLC37A4. Disease pulmonary hypertension associates Gene MMACHC. Disease pulmonary hypertension associates Gene MLX. Disease pulmonary hypertension associates Gene STAT1. Disease pulmonary hypertension associates Gene DLK1. Disease pulmonary hypertension associates Gene GBA1. Disease pulmonary hypertension associates Gene COX3. Disease pulmonary hypertension associates Gene CACNA1D. Disease pulmonary hypertension associates Gene LMNA. Disease pulmonary hypertension associates Gene SMAD9. Disease pulmonary hypertension associates Gene COX7B. Disease pulmonary hypertension associates Gene CITED2. Gene MIR424 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene ATP5F1A. Gene MIR143 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene SLC25A24. Disease pulmonary hypertension associates Gene SFTPA2. Disease pulmonary hypertension associates Gene ZMPSTE24. Disease pulmonary hypertension associates Gene SFTPB. Disease pulmonary hypertension associates Gene IRF5. Disease pulmonary hypertension associates Gene ACTA2. Disease pulmonary hypertension associates Gene ND4. Disease pulmonary hypertension associates Gene VAC14. Disease pulmonary hypertension associates Gene ND5. Disease pulmonary hypertension associates Gene DLL4. Disease pulmonary hypertension associates Gene CCR6. Disease pulmonary hypertension associates Gene SFTPC. Disease pulmonary hypertension associates Gene LAMA2. Disease pulmonary hypertension associates Gene ND1. Gene MIR204 associates Disease pulmonary hypertension. Disease pulmonary hypertension associates Gene FGFR1. Disease pulmonary hypertension associates Gene NDUFB10. \\nQuestion: Out of the given list, which Gene is associated with dermatomyositis and pulmonary hypertension. Given list is: TG, HLA-DPA1, PNPLA3, ZFPM2, UMOD'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048083.6728113}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecb5950e40c3a73093a994635d2cb603/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecb5950e40c3a73093a994635d2cb603/output.pkl Binary files differnew file mode 100644 index 0000000..eb33eef --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecb5950e40c3a73093a994635d2cb603/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc1d2bafeca49d9866c6c5d3b126afb/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc1d2bafeca49d9866c6c5d3b126afb/metadata.json new file mode 100644 index 0000000..5bbb20a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc1d2bafeca49d9866c6c5d3b126afb/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6736598014831543, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with ankylosing spondylitis and Crohn's disease. Given list is: rs219780, rs11209026, rs1233491, rs1953126, rs2294008\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758050461.164606}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc1d2bafeca49d9866c6c5d3b126afb/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc1d2bafeca49d9866c6c5d3b126afb/output.pkl Binary files differnew file mode 100644 index 0000000..6db4bc4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc1d2bafeca49d9866c6c5d3b126afb/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc608123aa1842589b56a873b1a7488/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc608123aa1842589b56a873b1a7488/metadata.json new file mode 100644 index 0000000..e646603 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc608123aa1842589b56a873b1a7488/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5723874568939209, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with age related macular degeneration and Kuhnt-Junius degeneration. Given list is: rs7579899, rs3803662, rs76972608, rs10490924, rs16948876'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048928.2469563}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc608123aa1842589b56a873b1a7488/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc608123aa1842589b56a873b1a7488/output.pkl Binary files differnew file mode 100644 index 0000000..083527e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecc608123aa1842589b56a873b1a7488/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecd9c74d87dc6a3004e6aa79e6591160/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecd9c74d87dc6a3004e6aa79e6591160/metadata.json new file mode 100644 index 0000000..230d50c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecd9c74d87dc6a3004e6aa79e6591160/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5139482021331787, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with myeloproliferative neoplasm and interstitial lung disease. Given list is: LRMDA, TERT, CLDN14, UCK2, STAT3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047827.6418788}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecd9c74d87dc6a3004e6aa79e6591160/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecd9c74d87dc6a3004e6aa79e6591160/output.pkl Binary files differnew file mode 100644 index 0000000..9a3cfb9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ecd9c74d87dc6a3004e6aa79e6591160/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee18627ea052c520227272e208f63794/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee18627ea052c520227272e208f63794/metadata.json new file mode 100644 index 0000000..3d5dbd9 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee18627ea052c520227272e208f63794/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5534324645996094, "input_args": {"instruction": "'Context: Disease oral cavity cancer associates Gene CLPTM1L. Disease oral cavity cancer associates Gene GPN1.. Variant rs10851478 associates Disease oral cavity cancer. Disease oral cavity cancer associates Gene ADH1B. Variant rs8181047 associates Disease oral cavity cancer. Disease oral cavity cancer associates Gene HLA-DQB1. Variant rs928674 associates Disease oral cavity cancer. Variant rs121909224 associates Disease oral cavity cancer. Variant rs9581943 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene CLPTM1L. Variant rs9543325 associates Disease pancreatic carcinoma. Variant rs139770721 associates Disease pancreatic carcinoma. Disease pancreatic carcinoma associates Gene TP53.. Disease pancreatic carcinoma associates Gene KRT8. Variant rs1568205026 associates Disease pancreatic carcinoma. Variant rs4795218 associates Disease pancreatic carcinoma. Gene MIR429 associates Disease pancreatic carcinoma. Variant rs139569694 associates Disease pancreatic carcinoma. Variant rs879254095 associates Disease pancreatic carcinoma. Variant rs543259829 associates Disease pancreatic carcinoma. Variant rs9554197 associates Disease pancreatic carcinoma. Variant rs587780192 associates Disease pancreatic carcinoma. Variant rs81002812 associates Disease pancreatic carcinoma. Variant rs397514495 associates Disease pancreatic carcinoma. Variant rs16986825 associates Disease pancreatic carcinoma. Gene MIR4787 associates Disease pancreatic carcinoma. Variant rs397518442 associates Disease pancreatic carcinoma. Gene MIR182 associates Disease pancreatic carcinoma. Variant rs80359306 associates Disease pancreatic carcinoma. Gene MIR484 associates Disease pancreatic carcinoma. Gene MIR129-1 associates Disease pancreatic carcinoma. Variant rs886038068 associates Disease pancreatic carcinoma. Variant rs796761323 associates Disease pancreatic carcinoma. Variant rs17688601 associates Disease pancreatic carcinoma. Variant rs397518443 associates Disease pancreatic carcinoma. Gene MIR10B associates Disease pancreatic carcinoma. Variant chr14:104000802 associates Disease pancreatic carcinoma. Gene MIR483 associates Disease pancreatic carcinoma. Variant rs80358972 associates Disease pancreatic carcinoma. Gene MIR375 associates Disease pancreatic carcinoma. Gene MIR506 associates Disease pancreatic carcinoma. Variant chr22:19495391 associates Disease pancreatic carcinoma. Variant rs886059211 associates Disease pancreatic carcinoma. Variant rs555607708 associates Disease pancreatic carcinoma. Variant rs587781633 associates Disease pancreatic carcinoma. Gene MIR485 associates Disease pancreatic carcinoma. Variant rs398064261 associates Disease pancreatic carcinoma. Variant rs80358702 associates Disease pancreatic carcinoma. Variant rs11876384 associates Disease pancreatic carcinoma. Variant rs505922 associates Disease pancreatic carcinoma. Gene MIR502 associates Disease pancreatic carcinoma. Variant rs775595174 associates Disease pancreatic carcinoma. Variant rs886059208 associates Disease pancreatic carcinoma. Variant rs539739051 associates Disease pancreatic carcinoma. Variant rs6971499 associates Disease pancreatic carcinoma. Gene MIR181B1 associates Disease pancreatic carcinoma. Variant rs372316981 associates Disease pancreatic carcinoma. Variant rs1064794204 associates Disease pancreatic carcinoma. Variant rs9573163 associates Disease pancreatic carcinoma. Variant rs2080764943 associates Disease pancreatic carcinoma. Variant rs587776650 associates Disease pancreatic carcinoma. \\nQuestion: Out of the given list, which Gene is associated with oral cavity cancer and pancreatic carcinoma. Given list is: CLPTM1L, CASZ1, AKAP6, HERC2, IL6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989769.741096}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee18627ea052c520227272e208f63794/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee18627ea052c520227272e208f63794/output.pkl Binary files differnew file mode 100644 index 0000000..3304af7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee18627ea052c520227272e208f63794/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee2c52f2775ef2e77e2381ffccb643ca/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee2c52f2775ef2e77e2381ffccb643ca/metadata.json new file mode 100644 index 0000000..75d06d2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee2c52f2775ef2e77e2381ffccb643ca/metadata.json @@ -0,0 +1 @@ +{"duration": 0.712890625, "input_args": {"instruction": "'Context: Disease interstitial lung disease associates Gene BTNL2. Disease interstitial lung disease associates Gene TP53. Disease interstitial lung disease associates Gene TERT. Disease interstitial lung disease associates Gene TGFB1. Disease interstitial lung disease associates Gene STAT3. Disease interstitial lung disease associates Gene COL3A1. Variant rs35705950 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene KIAA0319L. Disease interstitial lung disease associates Gene SCARB2. Disease interstitial lung disease associates Gene AP3B1. Disease interstitial lung disease associates Gene ITGA3. Disease interstitial lung disease associates Gene SFTPA1. Variant rs12702634 associates Disease interstitial lung disease. Variant rs2076295 associates Disease interstitial lung disease. Variant rs2034650 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene BACH2. Disease interstitial lung disease associates Gene CCN2. Disease interstitial lung disease associates Gene HLA-B. Disease interstitial lung disease associates Gene NKX2-1. Variant rs116483731 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CFTR. Disease interstitial lung disease associates Gene IL2RA. Disease interstitial lung disease associates Gene DCTN4. Disease interstitial lung disease associates Gene CTC1. Variant rs2736100 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene IL2RB. Variant rs6631122 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene SFTPA2. Variant rs561398374 associates Disease interstitial lung disease. Disease interstitial lung disease associates Gene CFAP298. Disease lung carcinoma associates Gene BTN3A1. Variant rs1057520037 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Disease lung carcinoma associates Gene BRCA2. Variant rs1057519719 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Variant rs4619206 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs13191445 associates Disease lung carcinoma. Variant rs17391694 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs1051730 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Variant chr19:54599348 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Disease lung carcinoma associates Gene TERT. Variant rs121913286 associates Disease lung carcinoma. Disease lung carcinoma associates Gene VTI1A. Disease lung carcinoma associates Gene IRF4. Variant rs9280949 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs13212562 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs1383485737 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs139244745 associates Disease lung carcinoma. Variant rs570295933 associates Disease lung cancer. Disease lung cancer associates Gene TP53. Variant rs1057519784 associates Disease lung cancer. Variant rs1057519783 associates Disease lung cancer. Variant rs41293465 associates Disease lung cancer. Disease lung cancer associates Gene CYP2A6. Gene MIR526B associates Disease lung cancer. Variant rs143884981 associates Disease lung cancer. Variant rs531398630 associates Disease lung cancer. Gene BCAT1 expressedin Disease lung cancer. Variant rs17337514 associates Disease lung cancer. Disease lung cancer associates Gene CDKN2A. Gene MIR513A2 associates Disease lung cancer. Disease lung cancer associates Gene ERBB2. Gene MIR1226 associates Disease lung cancer. Variant rs148934350 associates Disease lung cancer. Variant rs878855122 associates Disease lung cancer. Gene MIR513A1 associates Disease lung cancer. Variant rs35918369 associates Disease lung cancer. Gene TTC32 marker Disease lung cancer. Disease lung cancer associates Gene BRAF. Gene MIR365B associates Disease lung cancer. Gene MIR1228 associates Disease lung cancer. Variant rs770315135 associates Disease lung cancer. Gene MIR376A2 associates Disease lung cancer. Gene MIR3662 associates Disease lung cancer. Gene MIR103B2 associates Disease lung cancer. Variant rs370553043 associates Disease lung cancer. Variant rs121434569 associates Disease lung cancer. Gene LTA4H marker Disease lung cancer. Disease ontology identifier of lung non-squamous non-small cell carcinoma is DOID:0080521. Variant rs1057519785 associates Disease lung non-small cell carcinoma. Variant rs12296850 associates Disease lung non-small cell carcinoma. Variant rs1057519786 associates Disease lung non-small cell carcinoma. Variant rs1057519861 associates Disease lung non-small cell carcinoma. Variant rs1057519782 associates Disease lung non-small cell carcinoma. Variant rs1057519781 associates Disease lung non-small cell carcinoma. Variant rs1057519859 associates Disease lung non-small cell carcinoma. Variant rs1057519784 associates Disease lung non-small cell carcinoma. Variant rs1057519790 associates Disease lung non-small cell carcinoma. Variant rs1057519725 associates Disease lung non-small cell carcinoma. Variant rs1057519863 associates Disease lung non-small cell carcinoma. Variant rs1057519789 associates Disease lung non-small cell carcinoma. Variant rs1057519858 associates Disease lung non-small cell carcinoma. Variant rs1057519848 associates Disease lung non-small cell carcinoma. Variant rs1057519783 associates Disease lung non-small cell carcinoma. Variant rs1057519729 associates Disease lung non-small cell carcinoma. Variant rs121913430 associates Disease lung non-small cell carcinoma. Variant rs13181 associates Disease lung non-small cell carcinoma. Variant rs121913432 associates Disease lung non-small cell carcinoma. Variant rs397516982 associates Disease lung non-small cell carcinoma. Variant rs397516981 associates Disease lung non-small cell carcinoma. Variant rs200595745 associates Disease lung non-small cell carcinoma. Variant rs13167280 associates Disease lung non-small cell carcinoma. Variant rs121913231 associates Disease lung non-small cell carcinoma. Variant rs121913281 associates Disease lung non-small cell carcinoma. Variant rs397517086 associates Disease lung non-small cell carcinoma. Variant rs121913250 associates Disease lung non-small cell carcinoma. Variant rs397517094 associates Disease lung non-small cell carcinoma. Variant rs397517106 associates Disease lung non-small cell carcinoma. Variant rs10429489 associates Disease lung non-small cell carcinoma. \\nQuestion: Out of the given list, which Gene is associated with interstitial lung disease and lung carcinoma. Given list is: BTN2A1, BRCA2, STAT3, TERT, TFAP2B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989506.5288532}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee2c52f2775ef2e77e2381ffccb643ca/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee2c52f2775ef2e77e2381ffccb643ca/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee2c52f2775ef2e77e2381ffccb643ca/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee70c9d79ba5789336c842a28f5e9b24/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee70c9d79ba5789336c842a28f5e9b24/metadata.json new file mode 100644 index 0000000..577ea86 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee70c9d79ba5789336c842a28f5e9b24/metadata.json @@ -0,0 +1 @@ +{"duration": 17.987436532974243, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cutaneous lupus erythematosus and autoimmune hepatitis. Given list is: FGFR2, TERT, HLA-DQA1, IL6, HLA-DQB1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047935.2791753}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee70c9d79ba5789336c842a28f5e9b24/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee70c9d79ba5789336c842a28f5e9b24/output.pkl Binary files differnew file mode 100644 index 0000000..fe0c520 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ee70c9d79ba5789336c842a28f5e9b24/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ef8957e67a81a791bfcd6440ee6aaf13/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ef8957e67a81a791bfcd6440ee6aaf13/metadata.json new file mode 100644 index 0000000..2a28026 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ef8957e67a81a791bfcd6440ee6aaf13/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5109062194824219, "input_args": {"instruction": "'Context: Disease primary angle-closure glaucoma associates Gene EPDR1. Disease primary angle-closure glaucoma associates Gene GLIS3. Variant rs1258267 associates Disease primary angle-closure glaucoma. Disease primary angle-closure glaucoma associates Gene COL11A1. Variant rs3816415 associates Disease primary angle-closure glaucoma. Disease periodontitis associates Gene CTSC. Disease periodontitis associates Gene AEBP1. Variant rs1555796329 associates Disease periodontitis. Disease periodontitis associates Gene GLT6D1. Variant rs1192119303 associates Disease periodontitis. Disease periodontitis associates Gene COL3A1. Variant rs2083746502 associates Disease periodontitis. Disease periodontitis associates Gene DKC1. Gene MIR548A1 associates Disease periodontitis. Gene MIR548A3 associates Disease periodontitis. Disease periodontitis associates Gene CXCR4. Gene MIR548A2 associates Disease periodontitis. Variant rs1537415 associates Disease periodontitis. Disease periodontitis associates Gene CLPB. Disease periodontitis associates Gene AP3B1. Disease periodontitis associates Gene C1R. Gene MIR181B1 associates Disease periodontitis. Variant rs11084095 associates Disease periodontitis. Disease periodontitis associates Gene USB1. Disease periodontitis associates Gene C1S. Gene MIR181B2 associates Disease periodontitis. Variant rs371282377 associates Disease periodontitis. Gene MIR126 associates Disease periodontitis. Disease periodontitis associates Gene GORAB. Compound (1E,4Z,6E)-5-hydroxy-1,7-bis(4-hydroxy-3-methoxyphenyl)hepta-1,4,6-trien-3-one treats Disease periodontitis. Disease periodontitis associates Gene SLC37A4. Gene MIR19B2 associates Disease periodontitis. Disease periodontitis associates Gene NHP2. Gene MIR146A associates Disease periodontitis. Gene MIR543 associates Disease periodontitis. Variant rs747450344 associates Disease periodontitis. \\nQuestion: Out of the given list, which Gene is associated with primary angle-closure glaucoma and periodontitis. Given list is: EPDR1, ADH1B, USHBP1, POU5F1B, SHTN1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989654.1284523}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ef8957e67a81a791bfcd6440ee6aaf13/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ef8957e67a81a791bfcd6440ee6aaf13/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ef8957e67a81a791bfcd6440ee6aaf13/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f00fb4a5dea02ad1715fe57fa5349685/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f00fb4a5dea02ad1715fe57fa5349685/metadata.json new file mode 100644 index 0000000..d9916d5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f00fb4a5dea02ad1715fe57fa5349685/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5169618129730225, "input_args": {"instruction": "'Context: Disease inflammatory bowel disease 10 associates Gene ATG16L1.. Variant rs200823786 associates Disease inflammatory bowel disease 13.. Variant rs202002337 associates Disease inflammatory bowel disease 13. Variant rs2032582 associates Disease inflammatory bowel disease 13. Variant rs10065172 associates Disease inflammatory bowel disease 19.. Disease inflammatory bowel disease 17 associates Gene IL23R.. Disease inflammatory bowel disease associates Gene TNFSF15. Disease inflammatory bowel disease associates Gene IL10RA. Disease inflammatory bowel disease associates Gene IL10. Variant rs4656958 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene TCF4. Variant rs11677953 associates Disease inflammatory bowel disease. Variant rs12654812 associates Disease inflammatory bowel disease. Variant rs142738614 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL10RB. Variant rs4676410 associates Disease inflammatory bowel disease. Variant rs12722515 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene TNFRSF6B. Disease inflammatory bowel disease associates Gene HLA-B. Variant rs11681525 associates Disease inflammatory bowel disease. Variant chr5:17098189 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL23R. Disease inflammatory bowel disease associates Gene IL2RA. Disease inflammatory bowel disease associates Gene TNFAIP3. Variant rs11641016 associates Disease inflammatory bowel disease. Variant rs146951811 associates Disease inflammatory bowel disease. Variant rs11672983 associates Disease inflammatory bowel disease. Variant rs116392568 associates Disease inflammatory bowel disease. Variant rs1420098 associates Disease inflammatory bowel disease. Variant rs56399423 associates Disease inflammatory bowel disease. Variant rs1801274 associates Disease inflammatory bowel disease. Variant rs12585310 associates Disease inflammatory bowel disease. Variant rs4380874 associates Disease inflammatory bowel disease. Variant rs568879359 associates Disease inflammatory bowel disease. Disease inflammatory bowel disease associates Gene IL12B. Variant rs56167332 associates Disease inflammatory bowel disease. \\nQuestion: Out of the given list, which Gene is associated with inflammatory bowel disease and ulcerative colitis. Given list is: GATA3, IL10, HOXD3, IL23R, TNFSF15'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757988534.2770185}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f00fb4a5dea02ad1715fe57fa5349685/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f00fb4a5dea02ad1715fe57fa5349685/output.pkl Binary files differnew file mode 100644 index 0000000..f1ec930 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f00fb4a5dea02ad1715fe57fa5349685/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f03ab287bc23af00c74482fbec61bd5d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f03ab287bc23af00c74482fbec61bd5d/metadata.json new file mode 100644 index 0000000..4c1951c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f03ab287bc23af00c74482fbec61bd5d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.44493746757507324, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with thyroid gland papillary carcinoma and differentiated thyroid gland carcinoma. Given list is: ACOXL, POU5F1B, VAV3, PSCA, ZFPM2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989589.9376194}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f03ab287bc23af00c74482fbec61bd5d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f03ab287bc23af00c74482fbec61bd5d/output.pkl Binary files differnew file mode 100644 index 0000000..c9bde61 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f03ab287bc23af00c74482fbec61bd5d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f0c56c969b6cd452d7d88eb6f29e47d2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f0c56c969b6cd452d7d88eb6f29e47d2/metadata.json new file mode 100644 index 0000000..95cf27e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f0c56c969b6cd452d7d88eb6f29e47d2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6477606296539307, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung adenocarcinoma and triple-receptor negative breast cancer. Given list is: BTBD9, NTM, RP1, TERT, CASZ1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048358.315403}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f0c56c969b6cd452d7d88eb6f29e47d2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f0c56c969b6cd452d7d88eb6f29e47d2/output.pkl Binary files differnew file mode 100644 index 0000000..dacc83b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f0c56c969b6cd452d7d88eb6f29e47d2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f12f978aa6f830d1a1b7cf4fe67ec33c/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f12f978aa6f830d1a1b7cf4fe67ec33c/metadata.json new file mode 100644 index 0000000..26dfea6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f12f978aa6f830d1a1b7cf4fe67ec33c/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9079351425170898, "input_args": {"instruction": "'Context: Disease autoimmune disease associates Gene HLA-A. Disease autoimmune disease associates Gene HLA-B. Disease autoimmune disease associates Gene HLA-DQA1. Disease autoimmune disease associates Gene HLA-DQA2. Disease autoimmune disease associates Gene HLA-DQB2. Disease autoimmune disease associates Gene HLA-DQB1. Disease autoimmune disease associates Gene GATA3. Disease autoimmune disease associates Gene HLA-C. Disease autoimmune disease associates Gene HLA-DRB5. Disease autoimmune disease associates Gene HLA-DPB1. Disease autoimmune disease associates Gene IL23R. Disease autoimmune disease associates Gene SLC26A4. Disease autoimmune disease associates Gene HLA-G. Disease autoimmune disease associates Gene HLA-DRB1. Disease autoimmune disease associates Gene CCL21. Disease autoimmune disease associates Gene HLA-DRA. Disease autoimmune disease associates Gene IL27. Disease autoimmune disease associates Gene AIRE. Disease autoimmune disease associates Gene CCL2. Disease autoimmune disease associates Gene SAA1. Disease autoimmune disease associates Gene TNFRSF13C. Disease autoimmune disease associates Gene IL6R. Disease autoimmune disease associates Gene IL21. Disease autoimmune disease associates Gene IL4. Disease autoimmune disease associates Gene SAA2. Disease autoimmune disease associates Gene TNFRSF13B. Disease autoimmune disease associates Gene IL2RA. Disease autoimmune disease associates Gene MEFV. Disease autoimmune disease associates Gene IFNG. Disease autoimmune disease associates Gene TLR5. Disease autoimmune disease associates Gene IL2RB. Disease autoimmune disease associates Gene CTLA4. Disease autoimmune disease associates Gene IL10RA. Disease autoimmune disease associates Gene IL16. Disease autoimmune disease associates Gene OAS1. Disease autoimmune disease associates Gene FOXP3. Disease autoimmune disease associates Gene IL2. Disease autoimmune disease associates Gene IL13. Disease autoimmune disease associates Gene C4A. Disease autoimmune disease associates Gene IL10RB. Disease autoimmune disease associates Gene AFF3. Disease autoimmune disease associates Gene ARID5B. Disease autoimmune disease associates Gene CYP27B1. Disease autoimmune disease associates Gene IL1RN. Disease autoimmune disease associates Gene C4B. Disease autoimmune disease associates Gene C5. Disease autoimmune disease associates Gene IL7R. Disease autoimmune disease associates Gene PTPN22. Disease autoimmune disease associates Gene ITGAM. Disease autoimmune disease associates Gene IL12B. Disease autoimmune disease associates Gene FCGR2B. Gene MIR27B associates Disease allergic asthma. Gene MIR155 associates Disease allergic asthma. Gene MIR29C associates Disease allergic asthma. Gene MIR106B associates Disease allergic asthma. Gene MIR106A associates Disease allergic asthma. Gene MIR150 associates Disease allergic asthma. Gene MIR126 associates Disease allergic asthma. Gene MIR615 associates Disease allergic asthma. Gene MIR34A associates Disease allergic asthma. Disease ontology identifier of allergic asthma is DOID:9415. Gene MIR34B associates Disease allergic asthma. \\nQuestion: Out of the given list, which Variant is associated with autoimmune disease and atopic asthma. Given list is: rs62324212, rs10059133, rs149943, rs12931267, rs17156671'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049122.7356791}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f12f978aa6f830d1a1b7cf4fe67ec33c/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f12f978aa6f830d1a1b7cf4fe67ec33c/output.pkl Binary files differnew file mode 100644 index 0000000..82594bb --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f12f978aa6f830d1a1b7cf4fe67ec33c/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f29d2ff7897803b8ebd4943a26207515/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f29d2ff7897803b8ebd4943a26207515/metadata.json new file mode 100644 index 0000000..b64e2f6 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f29d2ff7897803b8ebd4943a26207515/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6469893455505371, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with idiopathic pulmonary fibrosis and myeloproliferative neoplasm. Given list is: STAT4, UMOD, ADGRV1, UMPS, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989532.8386896}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f29d2ff7897803b8ebd4943a26207515/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f29d2ff7897803b8ebd4943a26207515/output.pkl Binary files differnew file mode 100644 index 0000000..52bc2bc --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f29d2ff7897803b8ebd4943a26207515/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f2fa12633fb06b8d05bcd48616905efe/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f2fa12633fb06b8d05bcd48616905efe/metadata.json new file mode 100644 index 0000000..9461508 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f2fa12633fb06b8d05bcd48616905efe/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5146324634552002, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and central nervous system cancer. Given list is: PLG, HLA-DQA1, IL6, ATXN2, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989511.727719}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f2fa12633fb06b8d05bcd48616905efe/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f2fa12633fb06b8d05bcd48616905efe/output.pkl Binary files differnew file mode 100644 index 0000000..8ae54a0 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f2fa12633fb06b8d05bcd48616905efe/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3bfb2acb20f837c9ad529f2d8c697ef/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3bfb2acb20f837c9ad529f2d8c697ef/metadata.json new file mode 100644 index 0000000..2549436 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3bfb2acb20f837c9ad529f2d8c697ef/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9871344566345215, "input_args": {"instruction": "'Context: Disease thyroid gland papillary carcinoma associates Gene NKX2-1. Gene MIR1271 associates Disease thyroid gland papillary carcinoma. Gene MIR135B associates Disease thyroid gland papillary carcinoma. Gene MIR99B associates Disease thyroid gland papillary carcinoma. Gene MIR4728 associates Disease thyroid gland papillary carcinoma. Gene MIR369 associates Disease thyroid gland papillary carcinoma. Variant rs6996585 associates Disease thyroid gland papillary carcinoma. Gene MIR551B associates Disease thyroid gland papillary carcinoma. Gene MIR595 associates Disease thyroid gland papillary carcinoma. Gene MIR34C associates Disease thyroid gland papillary carcinoma. Gene MIR34B associates Disease thyroid gland papillary carcinoma. Gene MIR200A associates Disease thyroid gland papillary carcinoma. Gene MIR146B associates Disease thyroid gland papillary carcinoma. Gene MIR623 associates Disease thyroid gland papillary carcinoma. Gene MIR130B associates Disease thyroid gland papillary carcinoma. Gene MIR7-2 associates Disease thyroid gland papillary carcinoma. Gene MIR361 associates Disease thyroid gland papillary carcinoma. Gene MIR34A associates Disease thyroid gland papillary carcinoma. Gene MIR146A associates Disease thyroid gland papillary carcinoma. Gene MIR204 associates Disease thyroid gland papillary carcinoma. Gene MIR718 associates Disease thyroid gland papillary carcinoma. Variant rs6996585 associates Disease differentiated thyroid gland carcinoma. Variant rs11693806 associates Disease differentiated thyroid gland carcinoma. Variant rs12990503 associates Disease differentiated thyroid gland carcinoma. \\nQuestion: Out of the given list, which Gene is associated with thyroid gland papillary carcinoma and differentiated thyroid gland carcinoma. Given list is: ACOXL, POU5F1B, VAV3, PSCA, ZFPM2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989591.0801413}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3bfb2acb20f837c9ad529f2d8c697ef/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3bfb2acb20f837c9ad529f2d8c697ef/output.pkl Binary files differnew file mode 100644 index 0000000..34c5366 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3bfb2acb20f837c9ad529f2d8c697ef/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3e57fa330267ed44329cc1777f5fb0a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3e57fa330267ed44329cc1777f5fb0a/metadata.json new file mode 100644 index 0000000..a164746 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3e57fa330267ed44329cc1777f5fb0a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5063719749450684, "input_args": {"instruction": "'Context: Disease gastric fundus cancer associates Gene HLA-C. Disease gastric fundus cancer associates Gene ZBTB20. Disease gastric fundus cancer associates Gene TTC33. Disease gastric fundus cancer associates Gene PRKAA1. Disease gastric fundus cancer associates Gene NPIPB2. Disease gastric fundus cancer associates Gene MUC1. Variant rs2294008 associates Disease atrophic gastritis.. Variant rs2920283 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene NFKB1. Disease atrophic gastritis associates Gene CDH1. Disease atrophic gastritis associates Gene KRAS. Disease atrophic gastritis associates Gene LRBA. Disease atrophic gastritis associates Gene CTLA4. Disease atrophic gastritis associates Gene IL1RN. Disease atrophic gastritis associates Gene IFIH1. Gene MIR155 associates Disease atrophic gastritis. Disease atrophic gastritis associates Gene IL1B. Disease atrophic gastritis associates Gene PSCA. \\nQuestion: Out of the given list, which Variant is associated with gastric fundus cancer and atrophic gastritis. Given list is: rs2294008, rs2072499, rs3197999, rs1537377, rs988958'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758049049.1599634}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3e57fa330267ed44329cc1777f5fb0a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3e57fa330267ed44329cc1777f5fb0a/output.pkl Binary files differnew file mode 100644 index 0000000..28aefcd --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3e57fa330267ed44329cc1777f5fb0a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3ffaef8de57b105fac717bf08cd35b8/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3ffaef8de57b105fac717bf08cd35b8/metadata.json new file mode 100644 index 0000000..14fd22f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3ffaef8de57b105fac717bf08cd35b8/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4772672653198242, "input_args": {"instruction": "\"You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with Sjogren's syndrome and myositis. Given list is: HLA-DQA1, KIT, TERT, STAT4, TERT\"", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048190.3739898}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3ffaef8de57b105fac717bf08cd35b8/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3ffaef8de57b105fac717bf08cd35b8/output.pkl Binary files differnew file mode 100644 index 0000000..ffd53ec --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f3ffaef8de57b105fac717bf08cd35b8/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f4f8e70fe49cbe1ea5986ed61d43e7a1/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f4f8e70fe49cbe1ea5986ed61d43e7a1/metadata.json new file mode 100644 index 0000000..ad795ed --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f4f8e70fe49cbe1ea5986ed61d43e7a1/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6190276145935059, "input_args": {"instruction": "\"Context: Disease myositis associates Gene STAT4. Disease myositis associates Gene STING1. Disease myositis associates Gene TLR4. Disease myositis associates Gene TNFRSF1A. Disease myositis associates Gene FAS. Disease myositis associates Gene HLA-B. Disease myositis associates Gene PTPN22. Variant rs114042950 associates Disease myositis. Variant rs114388793 associates Disease myositis. Disease myositis associates Gene IL10. Variant rs115146037 associates Disease myositis. Disease myositis associates Gene FOXP3. Variant rs116662199 associates Disease myositis. Disease myositis associates Gene DDX39B. Variant rs114771815 associates Disease myositis. Variant rs114012716 associates Disease myositis. Variant rs116088953 associates Disease myositis. Disease myositis associates Gene COX3. Disease myositis associates Gene LSM11. Disease myositis associates Gene C4A. Disease myositis associates Gene COX1. Disease myositis associates Gene RNASEH2B. Variant rs114050967 associates Disease myositis. Disease myositis associates Gene IRF4. Disease myositis associates Gene MEFV. Disease myositis associates Gene RNASEH2C. Disease myositis associates Gene RNASEH2A. Variant rs115902351 associates Disease myositis. Disease myositis associates Gene ADAR. Disease myositis associates Gene IFNGR1. Disease myositis associates Gene IL23R. Variant rs3130614 associates Disease myositis. Disease myositis associates Gene ATP6V1G2. Variant rs2476601 associates Disease myositis. Disease myositis associates Gene UBAC2. Disease myositis associates Gene IL12A. Disease myositis associates Gene IRAK1. Disease myositis associates Gene MATR3. Variant rs188088967 associates Disease myositis. Disease myositis associates Gene TREX1. Disease myositis associates Gene UBA1. Variant rs9267488 associates Disease myositis. Variant DQA1*05:01 associates Disease myositis. Disease myositis associates Gene KLRC4. Variant rs3129843 associates Disease myositis. Disease Sjogren's syndrome associates Gene STAT4. Disease Sjogren's syndrome associates Gene TSBP1. Disease Sjogren's syndrome associates Gene TNPO3. Gene MIR146B associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene TNIP1. Disease Sjogren's syndrome associates Gene IRF5. Gene MIR146A associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene BLK. Disease Sjogren's syndrome associates Gene HLA-DQA1. Disease Sjogren's syndrome associates Gene TNFAIP3. Gene MIR150 associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene HLA-DRA. Gene MIR152 associates Disease Sjogren's syndrome. Gene MIR299 associates Disease Sjogren's syndrome. Gene MIR148A associates Disease Sjogren's syndrome. Gene MIR155 associates Disease Sjogren's syndrome. Gene MIR224 associates Disease Sjogren's syndrome. Gene MIR126 associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene GTF2I. Gene MIR326 associates Disease Sjogren's syndrome. Gene MIR21 associates Disease Sjogren's syndrome. \\nQuestion: Out of the given list, which Gene is associated with myositis and Sjogren's syndrome. Given list is: STAT4, FTO, ACOXL, MORC4, TNXB\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047779.2655025}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f4f8e70fe49cbe1ea5986ed61d43e7a1/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f4f8e70fe49cbe1ea5986ed61d43e7a1/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f4f8e70fe49cbe1ea5986ed61d43e7a1/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f57fedf29941de069503179bba19aeed/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f57fedf29941de069503179bba19aeed/metadata.json new file mode 100644 index 0000000..2c9545a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f57fedf29941de069503179bba19aeed/metadata.json @@ -0,0 +1 @@ +{"duration": 0.9455347061157227, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with lung squamous cell carcinoma and squamous cell carcinoma. Given list is: DTNB, BRCA2, CCDC33, IGF1R, XBP1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048754.7659135}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f57fedf29941de069503179bba19aeed/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f57fedf29941de069503179bba19aeed/output.pkl Binary files differnew file mode 100644 index 0000000..853dd4e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f57fedf29941de069503179bba19aeed/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f58e627bfa857dff985aad05ded8e102/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f58e627bfa857dff985aad05ded8e102/metadata.json new file mode 100644 index 0000000..a0a30ae --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f58e627bfa857dff985aad05ded8e102/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6041951179504395, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and lung carcinoma. Given list is: PTPN22, C5, TERT, FCGR2A, FADS2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989524.2328482}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f58e627bfa857dff985aad05ded8e102/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f58e627bfa857dff985aad05ded8e102/output.pkl Binary files differnew file mode 100644 index 0000000..45474c8 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f58e627bfa857dff985aad05ded8e102/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f5b0dd3524e7649362fa92d99efcef13/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f5b0dd3524e7649362fa92d99efcef13/metadata.json new file mode 100644 index 0000000..4c3535d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f5b0dd3524e7649362fa92d99efcef13/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6756677627563477, "input_args": {"instruction": "'Context: Disease immunoglobulin alpha deficiency resembles Disease membranous glomerulonephritis. Disease immunoglobulin alpha deficiency resembles Disease membranoproliferative glomerulonephritis. Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene BLNK. Disease immunoglobulin alpha deficiency associates Gene TCN2. Disease immunoglobulin alpha deficiency associates Gene CSNK2A1. Disease immunoglobulin alpha deficiency associates Gene CR2. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Variant rs1244181 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene PMM2. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Variant rs11299600 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene PTPRC. Disease immunoglobulin alpha deficiency associates Gene ALG12. Disease immunoglobulin alpha deficiency associates Gene NFE2L2. Disease immunoglobulin alpha deficiency associates Gene NFKB2. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene ZBTB24. Disease immunoglobulin alpha deficiency associates Gene KNSTRN. Disease immunoglobulin alpha deficiency associates Gene MTOR. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Disease immunoglobulin alpha deficiency associates Gene IVNS1ABP. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency resembles Disease membranous glomerulonephritis. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs1265159 associates Disease membranous glomerulonephritis. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs2187668 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene EGFL8. Disease membranous glomerulonephritis associates Gene NFKB1. Variant rs9405192 associates Disease membranous glomerulonephritis. Variant rs9272729 associates Disease membranous glomerulonephritis. Variant rs17831251 associates Disease membranous glomerulonephritis. Variant rs7750641 associates Disease membranous glomerulonephritis. Variant rs3134945 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Variant rs17830558 associates Disease membranous glomerulonephritis. Variant rs652888 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. Variant rs389884 associates Disease membranous glomerulonephritis. Variant rs3130618 associates Disease membranous glomerulonephritis. \\nQuestion: Out of the given list, which Gene is associated with immunoglobulin alpha deficiency and membranous glomerulonephritis. Given list is: HLA-DQA1, HLA-DQB1, MYH7, TNRC6B, CRTC1'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047704.6409101}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f5b0dd3524e7649362fa92d99efcef13/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f5b0dd3524e7649362fa92d99efcef13/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f5b0dd3524e7649362fa92d99efcef13/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f64631cad4e327dd56bfce368e30ad85/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f64631cad4e327dd56bfce368e30ad85/metadata.json new file mode 100644 index 0000000..837aa28 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f64631cad4e327dd56bfce368e30ad85/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6180222034454346, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with atrophic gastritis and gastric fundus cancer. Given list is: EYA2, CDKAL1, KAT2B, PSCA, PSCA'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758047884.962051}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f64631cad4e327dd56bfce368e30ad85/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f64631cad4e327dd56bfce368e30ad85/output.pkl Binary files differnew file mode 100644 index 0000000..5b0d558 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f64631cad4e327dd56bfce368e30ad85/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f69d2df1a83dd2a60f0888307cc0cab5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f69d2df1a83dd2a60f0888307cc0cab5/metadata.json new file mode 100644 index 0000000..566d43b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f69d2df1a83dd2a60f0888307cc0cab5/metadata.json @@ -0,0 +1 @@ +{"duration": 1.1628739833831787, "input_args": {"instruction": "'Context: Variant rs539960851 associates Disease breast cancer. Variant rs555381912 associates Disease breast cancer. Variant rs4986854 associates Disease breast cancer. Variant rs55854959 associates Disease breast cancer. Variant rs4986856 associates Disease breast cancer. Variant rs538280815 associates Disease breast cancer. Variant rs555200296 associates Disease breast cancer. Variant rs878853535 associates Disease breast cancer. Variant rs551338531 associates Disease breast cancer. Variant rs1399574459 associates Disease breast cancer. Variant rs876658535 associates Disease breast cancer. Variant rs878853559 associates Disease breast cancer. Variant rs1555285984 associates Disease breast cancer. Variant rs539613324 associates Disease breast cancer. Variant rs576081828 associates Disease breast cancer. Variant rs878853519 associates Disease breast cancer. Variant rs531398630 associates Disease breast cancer. Variant rs528541334 associates Disease breast cancer. Variant rs876659535 associates Disease breast cancer. Variant rs968150359 associates Disease breast cancer. Variant rs967461896 associates Disease breast cancer. Variant rs145551486 associates Disease breast cancer. Variant rs587781593 associates Disease breast cancer. Variant rs1567808616 associates Disease breast cancer. Variant rs55816687 associates Disease breast cancer. Variant rs533802049 associates Disease breast cancer. Variant rs557444760 associates Disease breast cancer. Variant rs61748181 associates Disease breast cancer. Variant rs587781614 associates Disease breast cancer. Variant rs1565532289 associates Disease breast cancer. Variant rs55874646 associates Disease breast cancer. Variant rs55650082 associates Disease breast cancer. Variant rs55639415 associates Disease breast cancer. Variant rs63750685 associates Disease breast cancer. Variant rs1565455938 associates Disease breast cancer. Variant rs59004709 associates Disease breast cancer. Variant rs149328018 associates Disease breast cancer. Variant rs1555281594 associates Disease breast cancer. Variant rs12721593 associates Disease breast cancer. Variant rs876658951 associates Disease breast cancer. Variant rs587782531 associates Disease breast cancer. Variant rs587781894 associates Disease breast cancer. Variant rs55875643 associates Disease breast cancer. Variant rs587780598 associates Disease breast cancer. Variant rs878853717 associates Disease breast cancer. Variant rs533475838 associates Disease breast cancer. Variant rs1267759029 associates Disease breast cancer. Variant rs587782466 associates Disease breast cancer. Variant rs55939572 associates Disease breast cancer. Variant rs568851024 associates Disease breast cancer. Variant rs876658468 associates Disease breast cancer. Variant rs55688530 associates Disease breast cancer. Variant rs45468199 associates Disease breast cancer. Variant rs587781991 associates Disease breast cancer. Variant rs587781525 associates Disease breast cancer. Variant rs554040246 associates Disease breast cancer. Variant rs553975112 associates Disease breast cancer. Variant rs149605979 associates Disease breast cancer. Variant rs2085553784 associates Disease breast cancer. Variant rs55689095 associates Disease breast cancer. Variant rs587780626 associates Disease breast cancer. Variant rs1225178489 associates Disease breast cancer. Variant rs1480250917 associates Disease breast cancer. Variant rs45561331 associates Disease breast cancer. Variant rs555607708 associates Disease breast cancer. Variant rs145855459 associates Disease breast cancer. Variant rs587782005 associates Disease breast cancer. Variant rs4986839 associates Disease breast cancer. Variant rs587781344 associates Disease breast cancer. Variant rs587780192 associates Disease breast cancer. Variant rs61758784 associates Disease breast cancer. Variant rs4987943 associates Disease breast cancer. Variant rs2077952602 associates Disease breast cancer. Variant rs587781456 associates Disease breast cancer. Variant rs63750027 associates Disease breast cancer. Variant rs1057519719 associates Disease lung carcinoma. Variant rs4975616 associates Disease lung carcinoma. Disease lung carcinoma associates Gene BRCA2. Variant rs1057520037 associates Disease lung carcinoma. Variant rs1057519720 associates Disease lung carcinoma. Variant rs116551911 associates Disease lung carcinoma. Variant rs142618987 associates Disease lung carcinoma. Variant rs1057520015 associates Disease lung carcinoma. Variant rs4619206 associates Disease lung carcinoma. Variant rs145093187 associates Disease lung carcinoma. Variant rs1794851612 associates Disease lung carcinoma. Variant rs116461399 associates Disease lung carcinoma. Disease lung carcinoma associates Gene CYP2A6. Variant rs895139219 associates Disease lung carcinoma. Variant rs549219764 associates Disease lung carcinoma. Variant rs864621996 associates Disease lung carcinoma. Variant rs149866169 associates Disease lung carcinoma. Variant rs11878604 associates Disease lung carcinoma. Variant rs115819854 associates Disease lung carcinoma. Variant rs35139818 associates Disease lung carcinoma. Variant rs35768595 associates Disease lung carcinoma. Variant rs557241012 associates Disease lung carcinoma. Variant rs116480994 associates Disease lung carcinoma. Variant rs55781567 associates Disease lung carcinoma. Variant rs4398410 associates Disease lung carcinoma. Variant rs34661125 associates Disease lung carcinoma. Variant rs115870917 associates Disease lung carcinoma. Variant rs56113850 associates Disease lung carcinoma. Variant rs11610143 associates Disease lung carcinoma. Variant rs397517085 associates Disease lung carcinoma. Variant rs114601353 associates Disease lung carcinoma. Variant rs116826541 associates Disease lung carcinoma. Variant rs31489 associates Disease lung carcinoma. Variant rs66488313 associates Disease lung carcinoma. Variant rs142442994 associates Disease lung carcinoma. Variant rs34244947 associates Disease lung carcinoma. Variant rs3117582 associates Disease lung carcinoma. Variant rs10863899 associates Disease lung carcinoma. Variant rs397516895 associates Disease lung carcinoma. Variant rs116718137 associates Disease lung carcinoma. Variant rs374787445 associates Disease lung carcinoma. Variant rs116418332 associates Disease lung carcinoma. Variant rs66759488 associates Disease lung carcinoma. Variant rs115666025 associates Disease lung carcinoma. Variant rs1489158055 associates Disease lung carcinoma. Variant rs116668069 associates Disease lung carcinoma. Variant rs4946256 associates Disease lung carcinoma. Variant rs4488809 associates Disease lung carcinoma. Gene MIR616 associates Disease lung carcinoma. Variant rs8034191 associates Disease lung carcinoma. Variant rs368493076 associates Disease lung carcinoma. Variant rs115729734 associates Disease lung carcinoma. Variant rs397517097 associates Disease lung carcinoma. Variant rs144433536 associates Disease lung carcinoma. Variant rs8042849 associates Disease lung carcinoma. Variant rs116822326 associates Disease lung carcinoma. Gene MIR558 associates Disease lung carcinoma. Variant rs397507466 associates Disease lung carcinoma. Variant rs146099759 associates Disease lung carcinoma. Variant rs148934350 associates Disease lung carcinoma. Variant rs115613607 associates Disease lung carcinoma. Variant rs952307505 associates Disease lung carcinoma. Variant rs1051730 associates Disease lung carcinoma. Variant rs8042374 associates Disease lung carcinoma. Variant rs114385935 associates Disease lung carcinoma. Variant rs115100928 associates Disease lung carcinoma. Variant rs144943614 associates Disease lung carcinoma. Variant rs501942 associates Disease lung carcinoma. Variant rs9280949 associates Disease lung carcinoma. Variant rs139789464 associates Disease lung carcinoma. \\nQuestion: Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and lung carcinoma. Given list is: ABCG2, GATA3, TP53, TERT, PLA2G6'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048082.0666735}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f69d2df1a83dd2a60f0888307cc0cab5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f69d2df1a83dd2a60f0888307cc0cab5/output.pkl Binary files differnew file mode 100644 index 0000000..721d580 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f69d2df1a83dd2a60f0888307cc0cab5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f713a4555000167339d2520c6e567b75/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f713a4555000167339d2520c6e567b75/metadata.json new file mode 100644 index 0000000..e087895 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f713a4555000167339d2520c6e567b75/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4914591312408447, "input_args": {"instruction": "\"Context: Disease systemic scleroderma associates Gene STAT4. Disease systemic scleroderma associates Gene DGKQ. Variant rs4681851 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene HLA-DRA. Disease systemic scleroderma associates Gene BLK. Disease systemic scleroderma associates Gene ATG5. Variant rs11642873 associates Disease systemic scleroderma. Variant rs4554699 associates Disease systemic scleroderma. Variant rs589446 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene NOTCH4. Gene MIR129-2 associates Disease systemic scleroderma. Variant rs45471499 associates Disease systemic scleroderma. Variant rs76285340 associates Disease systemic scleroderma. Variant rs62478615 associates Disease systemic scleroderma. Variant rs6457617 associates Disease systemic scleroderma. Variant rs3129763 associates Disease systemic scleroderma. Gene MIR129-1 associates Disease systemic scleroderma. Variant rs12531711 associates Disease systemic scleroderma. Variant rs8109496 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene PTPN22. Variant rs3821236 associates Disease systemic scleroderma. Variant rs685985 associates Disease systemic scleroderma. Variant rs9275390 associates Disease systemic scleroderma. Variant rs9296015 associates Disease systemic scleroderma. Variant rs1422673 associates Disease systemic scleroderma. Variant rs35677470 associates Disease systemic scleroderma. Variant rs443198 associates Disease systemic scleroderma. Variant rs11893432 associates Disease systemic scleroderma. Variant rs2056626 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene NUP85. Disease systemic scleroderma associates Gene FLG2. Disease systemic scleroderma associates Gene CSK. Variant rs2305743 associates Disease systemic scleroderma. Gene MIR29B2 associates Disease systemic scleroderma. Gene MIR503 associates Disease systemic scleroderma. Variant rs9884090 associates Disease systemic scleroderma. Variant rs633724 associates Disease systemic scleroderma. Variant rs3894194 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene TNFSF4. Variant rs4134466 associates Disease systemic scleroderma. Variant rs12534421 associates Disease systemic scleroderma. Disease systemic scleroderma associates Gene GSDMA. Disease systemic scleroderma associates Gene IL12RB2. Variant rs4731532 associates Disease systemic scleroderma. Variant rs4076852 associates Disease systemic scleroderma. Disease Sjogren's syndrome associates Gene STAT4. Disease Sjogren's syndrome associates Gene TSBP1. Disease Sjogren's syndrome associates Gene BLK. Disease Sjogren's syndrome associates Gene HLA-DRA. Disease Sjogren's syndrome associates Gene HLA-DQA1. Disease Sjogren's syndrome associates Gene IRF5. Disease Sjogren's syndrome associates Gene TTR. Disease Sjogren's syndrome associates Gene GTF2I. Disease Sjogren's syndrome associates Gene TNIP1. Gene MIR148A associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene TNPO3. Gene MIR126 associates Disease Sjogren's syndrome. Gene MIR155 associates Disease Sjogren's syndrome. Disease Sjogren's syndrome associates Gene TNFAIP3. Gene MIR335 associates Disease Sjogren's syndrome. Gene MIR146B associates Disease Sjogren's syndrome. Gene MIR342 associates Disease Sjogren's syndrome. Gene MIR146A associates Disease Sjogren's syndrome. Gene MIR326 associates Disease Sjogren's syndrome. Gene MIR21 associates Disease Sjogren's syndrome. Gene MIR224 associates Disease Sjogren's syndrome. \\nQuestion: Out of the given list, which Gene is associated with systemic scleroderma and Sjogren's syndrome. Given list is: KITLG, STAT4, SLC14A2, COL22A1, TDP2\"", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047945.6848965}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f713a4555000167339d2520c6e567b75/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f713a4555000167339d2520c6e567b75/output.pkl Binary files differnew file mode 100644 index 0000000..3722e70 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f713a4555000167339d2520c6e567b75/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f72e8c451ae7ce8c13cd6e88169a1884/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f72e8c451ae7ce8c13cd6e88169a1884/metadata.json new file mode 100644 index 0000000..c07f91f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f72e8c451ae7ce8c13cd6e88169a1884/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4352238178253174, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with psoriasis and psoriatic arthritis. Given list is: IGF2BP2, GRAMD1B, TNRC18, SFRP4, HLA-B'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757988422.7533836}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f72e8c451ae7ce8c13cd6e88169a1884/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f72e8c451ae7ce8c13cd6e88169a1884/output.pkl Binary files differnew file mode 100644 index 0000000..7b4239b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f72e8c451ae7ce8c13cd6e88169a1884/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7504f41b163aaef18efa83efc73668d/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7504f41b163aaef18efa83efc73668d/metadata.json new file mode 100644 index 0000000..8fe6e49 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7504f41b163aaef18efa83efc73668d/metadata.json @@ -0,0 +1 @@ +{"duration": 0.687004566192627, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Variant is associated with collagenous colitis and autoimmune hepatitis. Given list is: rs2187668, rs6426833, rs6969780, rs3787184, rs230540'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048924.5462024}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7504f41b163aaef18efa83efc73668d/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7504f41b163aaef18efa83efc73668d/output.pkl Binary files differnew file mode 100644 index 0000000..c69416f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7504f41b163aaef18efa83efc73668d/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7d5e03dc8de423e8b6c0f311028c1fd/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7d5e03dc8de423e8b6c0f311028c1fd/metadata.json new file mode 100644 index 0000000..aee7f1c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7d5e03dc8de423e8b6c0f311028c1fd/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5125672817230225, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with pancreatic carcinoma and duodenal ulcer. Given list is: ABO, CRTC1, CACNB2, PSCA, CDK8'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048136.4472294}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7d5e03dc8de423e8b6c0f311028c1fd/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7d5e03dc8de423e8b6c0f311028c1fd/output.pkl Binary files differnew file mode 100644 index 0000000..74e9268 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f7d5e03dc8de423e8b6c0f311028c1fd/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f8a85b7803e5326be7e191b356bc8248/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f8a85b7803e5326be7e191b356bc8248/metadata.json new file mode 100644 index 0000000..b28670f --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f8a85b7803e5326be7e191b356bc8248/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6071376800537109, "input_args": {"instruction": "'Context: Disease cutaneous lupus erythematosus associates Gene HLA-DQA1. Disease cutaneous lupus erythematosus associates Gene CSNK2B. Gene MIR485 associates Disease cutaneous lupus erythematosus. Variant rs9267531 associates Disease cutaneous lupus erythematosus. Variant rs2187668 associates Disease cutaneous lupus erythematosus. Disease membranous glomerulonephritis associates Gene HLA-DQA1. Disease membranous glomerulonephritis associates Gene TCF19. Disease membranous glomerulonephritis associates Gene JAK1. Variant rs3132580 associates Disease membranous glomerulonephritis. Variant rs3134945 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene FOXP3. Variant rs9267522 associates Disease membranous glomerulonephritis. Variant rs9405192 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene NFKB1. Variant rs9271573 associates Disease membranous glomerulonephritis. Variant rs1265159 associates Disease membranous glomerulonephritis. Variant rs1480380 associates Disease membranous glomerulonephritis. Variant rs3130618 associates Disease membranous glomerulonephritis. Variant rs9272729 associates Disease membranous glomerulonephritis. Variant rs3129939 associates Disease membranous glomerulonephritis. Variant rs3134792 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene EGFL8. Variant rs7750641 associates Disease membranous glomerulonephritis. Variant rs3115663 associates Disease membranous glomerulonephritis. Variant rs3096697 associates Disease membranous glomerulonephritis. Disease membranous glomerulonephritis associates Gene BTNL2. \\nQuestion: Out of the given list, which Gene is associated with cutaneous lupus erythematosus and membranous glomerulonephritis. Given list is: JAK2, IL6, HLA-DQA1, HNF1B, ZEB2'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048663.7607536}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f8a85b7803e5326be7e191b356bc8248/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f8a85b7803e5326be7e191b356bc8248/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/f8a85b7803e5326be7e191b356bc8248/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fa1b75a40ff9b16112160e4f1cd5395a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fa1b75a40ff9b16112160e4f1cd5395a/metadata.json new file mode 100644 index 0000000..d31affa --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fa1b75a40ff9b16112160e4f1cd5395a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7048749923706055, "input_args": {"instruction": "'Context: Disease kidney disease associates Gene CFB. Disease kidney disease associates Gene MCFD2. Disease kidney disease associates Gene MFSD2A. Disease kidney disease associates Gene CFH. Disease kidney disease associates Gene MCPH1. Disease kidney disease associates Gene TIMMDC1. Disease kidney disease associates Gene MMP23B. Disease kidney disease associates Gene MAFB. Disease kidney disease associates Gene C2CD3. Disease kidney disease associates Gene ATP6V1B2. Disease kidney disease associates Gene FBN1. Disease kidney disease associates Gene BRCA2. Disease kidney disease associates Gene ETFDH. Disease kidney disease associates Gene CFHR1. Disease kidney disease associates Gene CFHR3. Disease kidney disease associates Gene CLDN2. Disease kidney disease associates Gene CFHR2. Disease kidney disease associates Gene CFHR5. Disease kidney disease associates Gene COMT. Disease kidney disease associates Gene DCTN4. Disease kidney disease associates Gene HLA-B. Disease kidney disease associates Gene SLC26A4. Disease kidney disease associates Gene CUBN. Disease kidney disease associates Gene ETFB. Disease kidney disease associates Gene FREM2. Disease kidney disease associates Gene CFTR. Disease kidney disease associates Gene DACT1. Disease kidney disease associates Gene SLC36A2. Disease kidney disease associates Gene PPP2R1A. Disease kidney disease associates Gene MDH2. Disease kidney disease associates Gene C1QB. Disease kidney disease associates Gene CLCN3. Disease kidney disease associates Gene ATP6V1B1. Disease kidney disease associates Gene MSH6. Disease kidney disease associates Gene BLK. Disease kidney disease associates Gene BTNL2. Disease kidney disease associates Gene KIF1B. Disease kidney disease associates Gene KCNJ11. Disease kidney disease associates Gene MYO5B. Disease kidney disease associates Gene PPP2R3C. Disease kidney disease associates Gene ALDH4A1. Disease kidney disease associates Gene ATP6V0A4. Disease kidney disease associates Gene ABCC6. Disease kidney disease associates Gene CYP11B2. Disease kidney disease associates Gene CLDN16. Disease kidney disease associates Gene SLC26A9. Disease kidney disease associates Gene TMEM126B. Disease kidney disease associates Gene MSH3. Disease kidney disease associates Gene ZBTB16. Disease kidney disease associates Gene CRB2. Disease kidney disease associates Gene MMP1. Disease kidney disease associates Gene PALB2. Disease kidney disease associates Gene KCNJ10. Disease kidney disease associates Gene ATP6V1E1. Disease kidney disease associates Gene NEUROD2. Disease kidney disease associates Gene COL4A6. Disease kidney disease associates Gene CYB561. Disease kidney disease associates Gene KCNAB2. Disease kidney disease associates Gene CYP24A1. Disease kidney disease associates Gene SERPINH1. Disease kidney disease associates Gene CTNNB1. Disease kidney disease associates Gene DMP1. Disease kidney disease associates Gene CLDN3. Disease kidney disease associates Gene B3GALT6. Disease kidney disease associates Gene FBXW11. Disease kidney disease associates Gene MAGED2. Disease kidney disease associates Gene EYA1. Disease kidney disease associates Gene MID1. Disease kidney disease associates Gene KCTD1. Disease kidney disease associates Gene SLC26A1. Disease kidney disease associates Gene CLDN10. Disease kidney disease associates Gene B9D2. Disease kidney disease associates Gene CLCA4. Disease kidney disease associates Gene CYP4F22. Disease kidney disease associates Gene HOXD13. Disease age related macular degeneration associates Gene CFB. Disease age related macular degeneration associates Gene CFH. Disease age related macular degeneration associates Gene C2. Disease age related macular degeneration associates Gene CFHR4. Disease age related macular degeneration associates Gene CFHR5. Disease age related macular degeneration associates Gene CFHR3. Disease age related macular degeneration associates Gene CFHR1. Disease age related macular degeneration associates Gene ARMS2. Disease age related macular degeneration associates Gene FBLN5. Disease age related macular degeneration associates Gene TGFBR1. Disease age related macular degeneration associates Gene HERC2. Disease age related macular degeneration associates Gene CFI. Disease age related macular degeneration associates Gene TIMP3. Disease age related macular degeneration associates Gene HMCN1. Disease age related macular degeneration associates Gene CST3. Disease age related macular degeneration associates Gene ALDH1A2. Disease age related macular degeneration associates Gene ABCA4. Disease age related macular degeneration associates Gene SLC16A8. Disease age related macular degeneration associates Gene ASPM. Disease age related macular degeneration associates Gene RAD51B. Disease age related macular degeneration associates Gene CX3CR1. Disease age related macular degeneration associates Gene F13B. Disease age related macular degeneration associates Gene VEGFA. Disease age related macular degeneration associates Gene MCUB. Disease age related macular degeneration associates Gene C3. Disease age related macular degeneration associates Gene ERCC6. Disease age related macular degeneration associates Gene B3GLCT. Disease age related macular degeneration associates Gene C9. Disease age related macular degeneration associates Gene NT5DC1. Disease age related macular degeneration associates Gene CETP. Variant rs62642574 associates Disease age related macular degeneration. Disease age related macular degeneration associates Gene COL10A1. Disease age related macular degeneration associates Gene FRK. \\nQuestion: Out of the given list, which Gene is associated with kidney disease and age related macular degeneration. Given list is: CFH, MUC5B, DAB2IP, BTN2A1, ADH1B'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048120.7611072}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fa1b75a40ff9b16112160e4f1cd5395a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fa1b75a40ff9b16112160e4f1cd5395a/output.pkl Binary files differnew file mode 100644 index 0000000..8d7d05e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fa1b75a40ff9b16112160e4f1cd5395a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fb78fabe76b8d07f078b0b03f3e5face/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fb78fabe76b8d07f078b0b03f3e5face/metadata.json new file mode 100644 index 0000000..139c6ca --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fb78fabe76b8d07f078b0b03f3e5face/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7613828182220459, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with triple-receptor negative breast cancer and idiopathic pulmonary fibrosis. Given list is: CRTC1, TERT, ATG5, WNT10A, ULK4'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989508.73947}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fb78fabe76b8d07f078b0b03f3e5face/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fb78fabe76b8d07f078b0b03f3e5face/output.pkl Binary files differnew file mode 100644 index 0000000..008096c --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fb78fabe76b8d07f078b0b03f3e5face/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fbbb4fb8d6ac6457aaf63acecdb313ee/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fbbb4fb8d6ac6457aaf63acecdb313ee/metadata.json new file mode 100644 index 0000000..c390f75 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fbbb4fb8d6ac6457aaf63acecdb313ee/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5631563663482666, "input_args": {"instruction": "'Context: Disease male breast cancer associates Gene RAD51B. Variant rs78540526 associates Disease male breast cancer. Variant rs3803662 associates Disease male breast cancer. Variant rs3757322 associates Disease male breast cancer. Variant rs1314913 associates Disease male breast cancer.. Variant rs554219 associates Disease male breast cancer. Variant rs9397437 associates Disease male breast cancer. Disease male breast cancer associates Gene CCDC170. Disease male breast cancer associates Gene ESR1. Variant rs9383938 associates Disease male breast cancer. Disease male breast cancer presents Symptom Hemoptysis. Disease ontology identifier of male breast cancer is DOID:1614. Disease male breast cancer resembles Disease sweat gland benign neoplasm. Disease urticaria associates Gene TPSB2. Variant rs143547788 associates Disease urticaria. Variant rs3750996 associates Disease urticaria. Variant rs56043070 associates Disease urticaria. Disease urticaria associates Gene ZNF728. Disease urticaria associates Gene PTPN22. Disease urticaria associates Gene STIM1. Variant rs11030639 associates Disease urticaria. Disease urticaria associates Gene GCSAML. Disease urticaria resembles Disease complement deficiency. Disease allergic urticaria isa Disease urticaria. Disease urticaria isa Disease skin disease. Disease urticaria resembles Disease autoimmune thyroiditis. Disease urticaria resembles Disease plasma cell neoplasm. Disease urticaria resembles Disease vesiculobullous skin disease. \\nQuestion: Out of the given list, which Gene is associated with male breast cancer and urticaria. Given list is: BABAM1, RAD51B, PHGDH, ABO, TERT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989529.3651648}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fbbb4fb8d6ac6457aaf63acecdb313ee/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fbbb4fb8d6ac6457aaf63acecdb313ee/output.pkl Binary files differnew file mode 100644 index 0000000..c5a6bee --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fbbb4fb8d6ac6457aaf63acecdb313ee/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc86db619fa9a3b5cc5222b9433bc2a0/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc86db619fa9a3b5cc5222b9433bc2a0/metadata.json new file mode 100644 index 0000000..1ed6b88 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc86db619fa9a3b5cc5222b9433bc2a0/metadata.json @@ -0,0 +1 @@ +{"duration": 0.509087324142456, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with diffuse large B-cell lymphoma and allergic rhinitis. Given list is: IL2RA, SLC14A2, HLA-B, TNFSF13, ZEB2'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048305.2502618}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc86db619fa9a3b5cc5222b9433bc2a0/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc86db619fa9a3b5cc5222b9433bc2a0/output.pkl Binary files differnew file mode 100644 index 0000000..b49869e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc86db619fa9a3b5cc5222b9433bc2a0/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc9b7d54cef8be7b5573aff3dce04f1a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc9b7d54cef8be7b5573aff3dce04f1a/metadata.json new file mode 100644 index 0000000..753d822 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc9b7d54cef8be7b5573aff3dce04f1a/metadata.json @@ -0,0 +1 @@ +{"duration": 16.365251541137695, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with cervix carcinoma and autoimmune hepatitis. Given list is: CHST11, FAT3, IL6, ERAP1, HLA-DQA1'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048181.4360652}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc9b7d54cef8be7b5573aff3dce04f1a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc9b7d54cef8be7b5573aff3dce04f1a/output.pkl Binary files differnew file mode 100644 index 0000000..accf276 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fc9b7d54cef8be7b5573aff3dce04f1a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd36ff2b6d00a9f8db49871fa0e1e802/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd36ff2b6d00a9f8db49871fa0e1e802/metadata.json new file mode 100644 index 0000000..4680a1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd36ff2b6d00a9f8db49871fa0e1e802/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6115727424621582, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with ankylosing spondylitis and inflammatory bowel disease. Given list is: LPP, UCK2, YLPM1, DAB2IP, IL23R'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757989882.9500496}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd36ff2b6d00a9f8db49871fa0e1e802/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd36ff2b6d00a9f8db49871fa0e1e802/output.pkl Binary files differnew file mode 100644 index 0000000..525b727 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd36ff2b6d00a9f8db49871fa0e1e802/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd6d1c60747e09fdd65ff376866991e5/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd6d1c60747e09fdd65ff376866991e5/metadata.json new file mode 100644 index 0000000..f9ddb06 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd6d1c60747e09fdd65ff376866991e5/metadata.json @@ -0,0 +1 @@ +{"duration": 0.5576043128967285, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with nephrotic syndrome and oropharynx cancer. Given list is: PRKAG2, SYT14, VAV3, HLA-DQB1, PNPLA3'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1757990132.852291}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd6d1c60747e09fdd65ff376866991e5/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd6d1c60747e09fdd65ff376866991e5/output.pkl Binary files differnew file mode 100644 index 0000000..43537e5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd6d1c60747e09fdd65ff376866991e5/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd7e3b7b62c243b5105e93bd7e21da2a/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd7e3b7b62c243b5105e93bd7e21da2a/metadata.json new file mode 100644 index 0000000..ddd0a2d --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd7e3b7b62c243b5105e93bd7e21da2a/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6053259372711182, "input_args": {"instruction": "'Context: Disease central nervous system cancer associates Gene TERT. Disease central nervous system cancer associates Gene PHOX2B. Disease central nervous system cancer associates Gene POLD1. Disease central nervous system cancer associates Gene TGFBR2. Disease central nervous system cancer associates Gene TMEM106B. Variant rs59060240 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene ZSWIM6. Disease central nervous system cancer associates Gene ETFA. Variant rs6010620 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PDGFB. Disease central nervous system cancer associates Gene MMP23B. Disease central nervous system cancer associates Gene TMEM127. Disease central nervous system cancer associates Gene CDKN1B. Variant rs10069690 associates Disease central nervous system cancer. Variant rs4295627 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene POLR2A. Disease central nervous system cancer associates Gene GPR161. Disease central nervous system cancer associates Gene FGF8. Disease central nervous system cancer associates Gene PALB2. Disease central nervous system cancer associates Gene IFNG. Disease central nervous system cancer associates Gene TUBB. Variant rs55705857 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene CDKN1A. Disease central nervous system cancer associates Gene BMPR1A. Disease central nervous system cancer associates Gene MYO1H. Variant rs35850753 associates Disease central nervous system cancer. Variant rs2736100 associates Disease central nervous system cancer. Variant rs111696067 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene KRAS. Disease central nervous system cancer associates Gene CREBBP. Variant rs1920116 associates Disease central nervous system cancer. Variant rs4977756 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene TP53. Disease central nervous system cancer associates Gene EIF3F. Disease central nervous system cancer associates Gene DMPK. Disease central nervous system cancer associates Gene PMS1. Disease central nervous system cancer associates Gene TRAF7. Disease central nervous system cancer associates Gene KIF1B. Disease central nervous system cancer associates Gene PDE6D. Disease central nervous system cancer associates Gene OFD1. Variant rs2853676 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PTCH2. Disease central nervous system cancer associates Gene ZBTB16. Disease central nervous system cancer associates Gene SETBP1. Disease central nervous system cancer associates Gene NUTM1. Disease central nervous system cancer associates Gene GLI3. Disease central nervous system cancer associates Gene BAP1. Disease central nervous system cancer associates Gene BRAF. Variant rs2157719 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PDPN. Disease central nervous system cancer associates Gene FGFR1. Disease central nervous system cancer associates Gene GLI2. Disease central nervous system cancer associates Gene CDKN2B. Disease central nervous system cancer associates Gene COL14A1. Variant rs12230172 associates Disease central nervous system cancer. Variant rs1555876140 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene PDGFRB. Disease central nervous system cancer associates Gene PMS2. Disease central nervous system cancer associates Gene BRD4. Disease central nervous system cancer associates Gene SIX3. Disease central nervous system cancer associates Gene SMARCB1. Disease central nervous system cancer associates Gene PTPN11. Disease central nervous system cancer associates Gene FAM149B1. Variant rs12803321 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene LZTR1. Disease central nervous system cancer associates Gene KEAP1. Disease central nervous system cancer associates Gene FAT4. Disease central nervous system cancer associates Gene PDCD10. Disease central nervous system cancer associates Gene PRDM16. Disease central nervous system cancer associates Gene BRCA2. Variant rs1412829 associates Disease central nervous system cancer. Disease central nervous system cancer associates Gene UBE4B. Disease central nervous system cancer associates Gene GNAS. Disease central nervous system cancer associates Gene DICER1. Disease central nervous system cancer associates Gene FLI1. Disease idiopathic pulmonary fibrosis associates Gene TERT. Disease idiopathic pulmonary fibrosis associates Gene MUC5B. Disease idiopathic pulmonary fibrosis associates Gene TMEM42. Variant rs9860874 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1099802 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1288726 associates Disease idiopathic pulmonary fibrosis. Variant rs59424629 associates Disease idiopathic pulmonary fibrosis. Variant rs5743890 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1167980 associates Disease idiopathic pulmonary fibrosis. Variant rs116483731 associates Disease idiopathic pulmonary fibrosis. Variant rs9577395 associates Disease idiopathic pulmonary fibrosis. Variant rs5743894 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TGFB1. Variant chr11:1102586 associates Disease idiopathic pulmonary fibrosis. Variant rs2076295 associates Disease idiopathic pulmonary fibrosis. Variant rs35705950 associates Disease idiopathic pulmonary fibrosis. Variant rs17690703 associates Disease idiopathic pulmonary fibrosis. Variant chr11:1232712 associates Disease idiopathic pulmonary fibrosis. Variant rs12699415 associates Disease idiopathic pulmonary fibrosis. Variant rs12696304 associates Disease idiopathic pulmonary fibrosis. Variant rs12537430 associates Disease idiopathic pulmonary fibrosis. Variant rs2292181 associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene TINF2. Disease idiopathic pulmonary fibrosis associates Gene ACTRT3. Gene MIR142 associates Disease idiopathic pulmonary fibrosis. Variant rs11073517 associates Disease idiopathic pulmonary fibrosis. Variant rs4233306 associates Disease idiopathic pulmonary fibrosis. Variant rs1214759 associates Disease idiopathic pulmonary fibrosis. Variant rs2609259 associates Disease idiopathic pulmonary fibrosis. Variant rs41308092 associates Disease idiopathic pulmonary fibrosis. Variant rs11788059 associates Disease idiopathic pulmonary fibrosis. Variant rs28513081 associates Disease idiopathic pulmonary fibrosis. Variant rs2897075 associates Disease idiopathic pulmonary fibrosis. Gene MIR29A associates Disease idiopathic pulmonary fibrosis. Disease idiopathic pulmonary fibrosis associates Gene SFTPA1. Disease idiopathic pulmonary fibrosis associates Gene MAPT. Variant rs2077551 associates Disease idiopathic pulmonary fibrosis. \\nQuestion: Out of the given list, which Gene is associated with central nervous system cancer and idiopathic pulmonary fibrosis. Given list is: TERT, MORC4, DMRT1, GRAMD1B, GTF2I'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758047999.249468}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd7e3b7b62c243b5105e93bd7e21da2a/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd7e3b7b62c243b5105e93bd7e21da2a/output.pkl Binary files differnew file mode 100644 index 0000000..c4e465a --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fd7e3b7b62c243b5105e93bd7e21da2a/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fdf16170fb6d87bcbb2cc37e479abae2/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fdf16170fb6d87bcbb2cc37e479abae2/metadata.json new file mode 100644 index 0000000..5363955 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fdf16170fb6d87bcbb2cc37e479abae2/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4703831672668457, "input_args": {"instruction": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n\\nSentence : Out of the given list, which Gene is associated with estrogen-receptor negative breast cancer and lung adenocarcinoma. Given list is: SAMD9L, PTPRD, DAB2IP, IL23R, TERT'", "system_prompt": "'You are an expert disease entity extractor from a sentence and report it as JSON in the following format:\\nDiseases: <List of extracted entities>\\nPlease report only Diseases. Do not report any other entities like Genes, Proteins, Enzymes etc.\\n'", "temperature": "0.0"}, "time": 1758048072.02338}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fdf16170fb6d87bcbb2cc37e479abae2/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fdf16170fb6d87bcbb2cc37e479abae2/output.pkl Binary files differnew file mode 100644 index 0000000..e60eaae --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fdf16170fb6d87bcbb2cc37e479abae2/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe59e17d72f963b3f2462ebc460c5807/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe59e17d72f963b3f2462ebc460c5807/metadata.json new file mode 100644 index 0000000..fbd0b1b --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe59e17d72f963b3f2462ebc460c5807/metadata.json @@ -0,0 +1 @@ +{"duration": 0.6177887916564941, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis resembles Disease Clostridium difficile colitis. Disease collagenous colitis presents Symptom Diarrhea. Variant DRB1*1301-DQA1*0103-DQB1*0603 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene HLA-DQA1. Disease cervix carcinoma associates Gene HLA-G. Disease cervix carcinoma associates Gene HLA-DQA2. Variant HLA-DQA1*0301 associates Disease cervix carcinoma. Variant rs138885312 associates Disease cervix carcinoma. Variant rs143029752 associates Disease cervix carcinoma. Variant rs145023077 associates Disease cervix carcinoma. Variant HLA-DQB1*602 associates Disease cervix carcinoma. Variant rs57079996 associates Disease cervix carcinoma. Gene MIR519D associates Disease cervix carcinoma. Gene MIR381 associates Disease cervix carcinoma. Variant rs28380833 associates Disease cervix carcinoma. Variant rs2844512 associates Disease cervix carcinoma. Variant rs140991990 associates Disease cervix carcinoma. Gene MIR518D associates Disease cervix carcinoma. Gene MIR296 associates Disease cervix carcinoma. Variant HLA-B*15 associates Disease cervix carcinoma. Variant rs115137622 associates Disease cervix carcinoma. Variant rs114115115 associates Disease cervix carcinoma. Variant rs117960705 associates Disease cervix carcinoma. Variant rs3132461 associates Disease cervix carcinoma. Gene MIR1297 associates Disease cervix carcinoma. Variant rs142979264 associates Disease cervix carcinoma. Variant rs2856437 associates Disease cervix carcinoma. Gene MIR1290 associates Disease cervix carcinoma. Variant rs9257927 associates Disease cervix carcinoma. Variant rs138446575 associates Disease cervix carcinoma. Variant rs139337062 associates Disease cervix carcinoma. Variant rs9272143 associates Disease cervix carcinoma. Gene MIR29A associates Disease cervix carcinoma. Gene MIR494 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene TNXB. Gene MIR143 associates Disease cervix carcinoma. Variant rs150806792 associates Disease cervix carcinoma. Gene MIR491 associates Disease cervix carcinoma. Gene MIR497 associates Disease cervix carcinoma. Variant rs59661306 associates Disease cervix carcinoma. Variant rs140668832 associates Disease cervix carcinoma. Variant rs9276435 associates Disease cervix carcinoma. Gene MIR1284 associates Disease cervix carcinoma. Disease cervix carcinoma associates Gene LTA. Gene MIR485 associates Disease cervix carcinoma. \\nQuestion: Out of the given list, which Gene is associated with collagenous colitis and cervix carcinoma. Given list is: NEURL1, TERT, HLA-DQA1, TERT, SLC17A4'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989943.03799}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe59e17d72f963b3f2462ebc460c5807/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe59e17d72f963b3f2462ebc460c5807/output.pkl Binary files differnew file mode 100644 index 0000000..5a2c81e --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe59e17d72f963b3f2462ebc460c5807/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe6392af452fcd4d26408cc8a1f54f27/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe6392af452fcd4d26408cc8a1f54f27/metadata.json new file mode 100644 index 0000000..bc40ae4 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe6392af452fcd4d26408cc8a1f54f27/metadata.json @@ -0,0 +1 @@ +{"duration": 0.564232587814331, "input_args": {"instruction": "'Context: Variant rs116390453 associates Disease abdominal aortic aneurysm. Variant rs4936098 associates Disease abdominal aortic aneurysm. Variant rs118039278 associates Disease abdominal aortic aneurysm. Variant rs3176336 associates Disease abdominal aortic aneurysm. Variant rs55958997 associates Disease abdominal aortic aneurysm. Variant rs58749629 associates Disease abdominal aortic aneurysm.. Variant rs113626898 associates Disease abdominal aortic aneurysm. Variant rs1795061 associates Disease abdominal aortic aneurysm. Variant rs964184 associates Disease abdominal aortic aneurysm. Variant rs429358 associates Disease abdominal aortic aneurysm. Variant rs35254673 associates Disease abdominal aortic aneurysm. Variant rs9316871 associates Disease abdominal aortic aneurysm. Variant rs73149487 associates Disease abdominal aortic aneurysm. Variant rs193181528 associates Disease abdominal aortic aneurysm. Variant rs10985349 associates Disease abdominal aortic aneurysm. Variant rs11591147 associates Disease abdominal aortic aneurysm. Variant rs2383207 associates Disease abdominal aortic aneurysm. Variant rs4401144 associates Disease abdominal aortic aneurysm. Variant rs2836411 associates Disease abdominal aortic aneurysm. Variant rs10808546 associates Disease abdominal aortic aneurysm. Variant rs12133641 associates Disease abdominal aortic aneurysm. Variant rs1466535 associates Disease abdominal aortic aneurysm. Variant rs602633 associates Disease abdominal aortic aneurysm. Variant rs10757274 associates Disease abdominal aortic aneurysm. Variant rs1412445 associates Disease abdominal aortic aneurysm. Variant rs10023907 associates Disease abdominal aortic aneurysm. Variant rs6511720 associates Disease abdominal aortic aneurysm. Variant rs7025486 associates Disease abdominal aortic aneurysm. Variant rs149014140 associates Disease thoracic aortic aneurysm. Variant rs148927240 associates Disease thoracic aortic aneurysm. Variant rs35766612 associates Disease thoracic aortic aneurysm. Variant rs4074718 associates Disease thoracic aortic aneurysm. Variant rs55633527 associates Disease thoracic aortic aneurysm.. Variant rs4073288 associates Disease thoracic aortic aneurysm. Variant rs1036476 associates Disease thoracic aortic aneurysm. Variant rs78851735 associates Disease thoracic aortic aneurysm. Variant rs773847667 associates Disease thoracic aortic aneurysm. Variant rs7904519 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene HLA-B. Disease thoracic aortic aneurysm associates Gene FBXW11. Disease thoracic aortic aneurysm associates Gene ATP6V1A. Disease thoracic aortic aneurysm associates Gene B3GALT6. Disease thoracic aortic aneurysm associates Gene ACTL6A. Disease thoracic aortic aneurysm associates Gene MMP23B. Disease thoracic aortic aneurysm associates Gene MYH11. Disease thoracic aortic aneurysm associates Gene FBN1. Disease thoracic aortic aneurysm associates Gene VPS37D. Disease thoracic aortic aneurysm associates Gene SLC2A10. Disease thoracic aortic aneurysm associates Gene FBN2. Disease thoracic aortic aneurysm associates Gene ACTL6B. Disease thoracic aortic aneurysm associates Gene ANGPTL6. Disease thoracic aortic aneurysm associates Gene HTT. Disease thoracic aortic aneurysm associates Gene LOX. Disease thoracic aortic aneurysm associates Gene ACTA2. Disease thoracic aortic aneurysm associates Gene SLC12A2. Disease thoracic aortic aneurysm associates Gene COL1A1. Disease thoracic aortic aneurysm associates Gene ADAMTS19. Disease thoracic aortic aneurysm associates Gene SVBP. Disease thoracic aortic aneurysm associates Gene FBLN5. Disease thoracic aortic aneurysm associates Gene WDFY3. Disease thoracic aortic aneurysm associates Gene HSPG2. Disease thoracic aortic aneurysm associates Gene COL3A1. Disease thoracic aortic aneurysm associates Gene WASF1. Disease thoracic aortic aneurysm associates Gene TNRC6B. Disease thoracic aortic aneurysm associates Gene MAPK8IP3. Disease thoracic aortic aneurysm localizes Anatomy abdominal aorta. Disease thoracic aortic aneurysm associates Gene TGFBR1. Disease thoracic aortic aneurysm associates Gene GATA5. Disease thoracic aortic aneurysm associates Gene ALDH1A2. Disease thoracic aortic aneurysm associates Gene COL5A2. Disease thoracic aortic aneurysm associates Gene TGFB3. Disease thoracic aortic aneurysm associates Gene COL1A2. Disease thoracic aortic aneurysm associates Gene FKBP6. Disease thoracic aortic aneurysm associates Gene KCNAB2. Disease thoracic aortic aneurysm associates Gene TGFB2. Disease thoracic aortic aneurysm associates Gene BAP1. Gene MIR29B2 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene STX1A. Disease thoracic aortic aneurysm associates Gene ALG5. Disease thoracic aortic aneurysm associates Gene SATB1. Disease thoracic aortic aneurysm associates Gene ALG9. Disease thoracic aortic aneurysm associates Gene ATP2B1. Disease thoracic aortic aneurysm associates Gene SMAD6. Disease thoracic aortic aneurysm associates Gene MYT1L. Gene MIR29B1 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene THSD4. Disease thoracic aortic aneurysm associates Gene BCAS3. Disease thoracic aortic aneurysm associates Gene COL5A1. Disease thoracic aortic aneurysm associates Gene THSD1. Disease thoracic aortic aneurysm associates Gene NKX2-5. Gene MIR133A1 associates Disease thoracic aortic aneurysm. Disease thoracic aortic aneurysm associates Gene TGFBR3. Disease thoracic aortic aneurysm associates Gene TCF7L2. Disease thoracic aortic aneurysm associates Gene HS2ST1. \\nQuestion: Out of the given list, which Variant is associated with abdominal aortic aneurysm and thoracic aortic aneurysm. Given list is: rs11675342, rs595244, rs3018362, rs11651755, rs1709393'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048862.2177324}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe6392af452fcd4d26408cc8a1f54f27/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe6392af452fcd4d26408cc8a1f54f27/output.pkl Binary files differnew file mode 100644 index 0000000..e7cd722 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/fe6392af452fcd4d26408cc8a1f54f27/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffb6c2df70a8e094cea4aafa9750bd75/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffb6c2df70a8e094cea4aafa9750bd75/metadata.json new file mode 100644 index 0000000..336bd52 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffb6c2df70a8e094cea4aafa9750bd75/metadata.json @@ -0,0 +1 @@ +{"duration": 0.4578418731689453, "input_args": {"instruction": "'Context: Disease collagenous colitis associates Gene HLA-DQA1. Disease ontology identifier of collagenous colitis is DOID:0060183. Disease collagenous colitis presents Symptom Diarrhea. Disease collagenous colitis resembles Disease protein-losing enteropathy. Disease immunoglobulin alpha deficiency associates Gene TCF3. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13C. Disease immunoglobulin alpha deficiency associates Gene TNFRSF11A. Disease immunoglobulin alpha deficiency associates Gene CLEC16A. Disease immunoglobulin alpha deficiency associates Gene GATA3. Disease immunoglobulin alpha deficiency associates Gene TNFRSF13B. Disease immunoglobulin alpha deficiency associates Gene HLA-DQB1. Disease immunoglobulin alpha deficiency associates Gene HLA-DQA1. Disease immunoglobulin alpha deficiency associates Gene IL2RG. Disease immunoglobulin alpha deficiency associates Gene REL. Disease immunoglobulin alpha deficiency associates Gene DCLRE1C. Disease immunoglobulin alpha deficiency associates Gene ITCH. Disease immunoglobulin alpha deficiency associates Gene PIK3CG. Disease immunoglobulin alpha deficiency associates Gene DNMT3B. Disease immunoglobulin alpha deficiency associates Gene CSNK2A1. Disease immunoglobulin alpha deficiency associates Gene CD79B. Disease immunoglobulin alpha deficiency associates Gene CD3D. Disease immunoglobulin alpha deficiency associates Gene CD3E. Variant rs116041786 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene LCK. Disease immunoglobulin alpha deficiency associates Gene IL2RA. Disease immunoglobulin alpha deficiency associates Gene CTLA4. Variant rs34069391 associates Disease immunoglobulin alpha deficiency.. Variant rs4565870 associates Disease immunoglobulin alpha deficiency. Variant rs1990760 associates Disease immunoglobulin alpha deficiency. Disease immunoglobulin alpha deficiency associates Gene PTPRC. Disease immunoglobulin alpha deficiency associates Gene CARD11. \\nQuestion: Out of the given list, which Gene is associated with collagenous colitis and immunoglobulin alpha deficiency. Given list is: EPAS1, MYH7, RELN, HLA-DQA1, KIT'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1757989940.3613303}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffb6c2df70a8e094cea4aafa9750bd75/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffb6c2df70a8e094cea4aafa9750bd75/output.pkl Binary files differnew file mode 100644 index 0000000..b9fffd7 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffb6c2df70a8e094cea4aafa9750bd75/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffdb0dc9d55384f501dde476297c8c66/metadata.json b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffdb0dc9d55384f501dde476297c8c66/metadata.json new file mode 100644 index 0000000..38e03c5 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffdb0dc9d55384f501dde476297c8c66/metadata.json @@ -0,0 +1 @@ +{"duration": 0.7421538829803467, "input_args": {"instruction": "'Context: Variant rs4679956 associates Disease androgenic alopecia. Variant rs58788673 associates Disease androgenic alopecia. Variant rs12203592 associates Disease androgenic alopecia. Variant rs143149578 associates Disease androgenic alopecia. Variant rs61784834 associates Disease androgenic alopecia. Variant rs62385385 associates Disease androgenic alopecia. Variant rs200644307 associates Disease androgenic alopecia. Variant rs62146540 associates Disease androgenic alopecia. Variant rs5933688 associates Disease androgenic alopecia. Variant rs6752754 associates Disease androgenic alopecia. Variant rs6047844 associates Disease androgenic alopecia. Variant rs9357047 associates Disease androgenic alopecia. Variant rs2180439 associates Disease androgenic alopecia. Variant rs12752809 associates Disease androgenic alopecia. Variant rs9282858 associates Disease androgenic alopecia. Variant rs201408539 associates Disease androgenic alopecia. Variant rs9287638 associates Disease androgenic alopecia. Variant rs572756998 associates Disease androgenic alopecia. Variant rs182973285 associates Disease androgenic alopecia. Variant chr17:43947866 associates Disease androgenic alopecia. Variant rs8085664 associates Disease androgenic alopecia. Variant rs6788232 associates Disease androgenic alopecia. Variant rs6546334 associates Disease androgenic alopecia. Variant rs68088846 associates Disease androgenic alopecia. Variant rs11037975 associates Disease androgenic alopecia. Variant rs16863765 associates Disease androgenic alopecia. Variant rs191648835 associates Disease androgenic alopecia. Variant rs34991987 associates Disease androgenic alopecia. Variant rs144149795 associates Disease androgenic alopecia. Variant rs552649178 associates Disease androgenic alopecia. Variant rs74333950 associates Disease androgenic alopecia. Variant rs3781458 associates Disease androgenic alopecia. Variant rs35892873 associates Disease androgenic alopecia. Variant rs6945541 associates Disease androgenic alopecia. Variant rs111763724 associates Disease androgenic alopecia. Variant rs17833789 associates Disease androgenic alopecia. Variant rs4268748 associates Disease squamous cell carcinoma. Variant rs4455710 associates Disease squamous cell carcinoma. Variant rs62209647 associates Disease squamous cell carcinoma. Variant rs62246017 associates Disease squamous cell carcinoma. Variant rs149906873 associates Disease squamous cell carcinoma. Variant rs35324266 associates Disease squamous cell carcinoma. Variant rs74664507 associates Disease squamous cell carcinoma. Variant rs12203592 associates Disease squamous cell carcinoma. Variant rs121913431 associates Disease squamous cell carcinoma. Variant rs6791479 associates Disease squamous cell carcinoma. Variant rs267598140 associates Disease squamous cell carcinoma. Variant rs1246946 associates Disease squamous cell carcinoma. Variant rs9383064 associates Disease squamous cell carcinoma. Variant rs11571833 associates Disease squamous cell carcinoma. Variant rs35063026 associates Disease squamous cell carcinoma. Variant rs6059655 associates Disease squamous cell carcinoma. Variant rs121913230 associates Disease squamous cell carcinoma. Variant rs10810657 associates Disease squamous cell carcinoma. Variant rs2494938 associates Disease squamous cell carcinoma. Variant rs16891982 associates Disease squamous cell carcinoma. Variant rs8063761 associates Disease squamous cell carcinoma. Variant rs13301660 associates Disease squamous cell carcinoma. Variant rs35407 associates Disease squamous cell carcinoma. Variant rs17879961 associates Disease squamous cell carcinoma. Variant rs1805007 associates Disease squamous cell carcinoma. Variant rs1126809 associates Disease squamous cell carcinoma. Variant rs11707807 associates Disease squamous cell carcinoma. Variant rs1800407 associates Disease squamous cell carcinoma. Variant rs1460816 associates Disease squamous cell carcinoma. Variant rs12916300 associates Disease squamous cell carcinoma. Disease squamous cell carcinoma associates Gene EPB41L1. Disease squamous cell carcinoma associates Gene HLA-DQA1. Disease squamous cell carcinoma associates Gene BRCA2. Disease squamous cell carcinoma associates Gene CYP1B1. Disease squamous cell carcinoma associates Gene ERCC4. Disease squamous cell carcinoma associates Gene GTF2H5. Disease squamous cell carcinoma associates Gene COL14A1. Disease squamous cell carcinoma associates Gene GATA1. Disease squamous cell carcinoma associates Gene SLC17A9. Disease squamous cell carcinoma associates Gene COL17A1. Disease squamous cell carcinoma associates Gene SLC6A17. Disease squamous cell carcinoma associates Gene KRT14. Disease squamous cell carcinoma associates Gene FOXP1. Disease squamous cell carcinoma associates Gene HERC2. Disease squamous cell carcinoma associates Gene GTF2E2. Disease squamous cell carcinoma associates Gene TP53. Disease squamous cell carcinoma associates Gene MMP1. Disease squamous cell carcinoma associates Gene TRPS1. Disease squamous cell carcinoma associates Gene SLC45A2. Disease squamous cell carcinoma associates Gene OCA2. Disease squamous cell carcinoma associates Gene AHR. Disease squamous cell carcinoma associates Gene NOTCH1. Disease squamous cell carcinoma associates Gene COL7A1. Disease squamous cell carcinoma associates Gene ATR. Disease squamous cell carcinoma associates Gene ERCC2. Disease squamous cell carcinoma associates Gene LRFN2. Disease squamous cell carcinoma associates Gene KRT5. Disease squamous cell carcinoma associates Gene CDKN2A. Disease squamous cell carcinoma associates Gene STAT1. Disease squamous cell carcinoma associates Gene ERCC3. Disease squamous cell carcinoma associates Gene TERT. Disease squamous cell carcinoma associates Gene PPARGC1B. Disease squamous cell carcinoma associates Gene AAGAB. Disease squamous cell carcinoma associates Gene NTHL1. Disease squamous cell carcinoma associates Gene TNFRSF10B. Disease squamous cell carcinoma associates Gene GJB2. Disease squamous cell carcinoma associates Gene ERCC5. Disease squamous cell carcinoma associates Gene MC1R. Disease squamous cell carcinoma associates Gene PIK3CA. Disease squamous cell carcinoma associates Gene CTSC. Disease squamous cell carcinoma associates Gene CHEK2. Disease squamous cell carcinoma associates Gene BACH2. Disease squamous cell carcinoma associates Gene TYR. Disease squamous cell carcinoma associates Gene FAT1. Disease squamous cell carcinoma associates Gene RCC2. \\nQuestion: Out of the given list, which Variant is associated with androgenic alopecia and squamous cell carcinoma. Given list is: rs10273639, rs334, rs595244, rs6457327, rs12203592'", "system_prompt": "'You are an expert biomedical researcher. For answering the Question at the end, you need to first read the Context provided.\\nBased on that Context, provide your answer in the following JSON format for the Question asked.\\n{{\\n \"answer\": <correct answer>\\n}}\\n'", "temperature": "0"}, "time": 1758048984.7444913}
\ No newline at end of file diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffdb0dc9d55384f501dde476297c8c66/output.pkl b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffdb0dc9d55384f501dde476297c8c66/output.pkl Binary files differnew file mode 100644 index 0000000..936d8de --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/ffdb0dc9d55384f501dde476297c8c66/output.pkl diff --git a/cachegpt/joblib/kg_rag/utility/get_Gemini_response/func_code.py b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/func_code.py new file mode 100644 index 0000000..66367d2 --- /dev/null +++ b/cachegpt/joblib/kg_rag/utility/get_Gemini_response/func_code.py @@ -0,0 +1,5 @@ +# first line: 242 +@memory.cache +def get_Gemini_response(instruction, system_prompt, temperature=0.0): + res = fetch_Gemini_response(instruction, system_prompt, temperature) + return res |