Merge master into main

1 files changed, 19 insertions, 0 deletions

diff --git a/files/data_io/utils/visualize.py b/files/data_io/utils/visualize.py
new file mode 100644
index 0000000..6f0de95
--- /dev/null
+++ b/files/data_io/utils/visualize.py
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+import matplotlib.pyplot as plt
+import torch
+
+def plot_raster(spikes: torch.Tensor, title=None):
+    """
+    Plot raster diagram of spike activity (T,B,N) or (T,N).
+    """
+    s = spikes.detach().cpu()
+    if s.ndim == 3:
+        s = s[:, 0, :]  # take first batch
+    t, n = s.shape
+    for i in range(n):
+        times = torch.nonzero(s[:, i]).squeeze().numpy()
+        plt.scatter(times, i * np.ones_like(times), s=2, c='black')
+    plt.xlabel("Time step")
+    plt.ylabel("Neuron index")
+    if title:
+        plt.title(title)
+    plt.show()