Add appendix table generator and generated LaTeX fragments

generate_paper_tables.py reads the row-level CSVs and emits the four
appendix tables (initialization calibration rows, finite-time cells,
CNN calibration rows, learning-rate regimes) with the paper's nested
uncertainty convention. The fragments are included by the manuscript
via \input; no table value is transcribed manually.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

4 files changed, 92 insertions, 0 deletions

diff --git a/outputs/tables/cnn_initialization_rows.tex b/outputs/tables/cnn_initialization_rows.tex
new file mode 100644
index 0000000..9066ce0
--- /dev/null
+++ b/outputs/tables/cnn_initialization_rows.tex
@@ -0,0 +1,14 @@
+\begin{tabular}{@{}lrccc@{}}
+\toprule
+Rule & Init & Prediction & Measured & SE \\
+\midrule
+DFA & 0 & 0.647613 & 0.652511 & 0.0051 \\
+DFA & 1 & 0.591587 & 0.587769 & 0.0066 \\
+DFA & 2 & 0.771871 & 0.776294 & 0.0053 \\
+DFA & 3 & 0.815630 & 0.814164 & 0.0052 \\
+FA & 0 & 0.647613 & 0.648186 & 0.005 \\
+FA & 1 & 0.591587 & 0.599896 & 0.0064 \\
+FA & 2 & 0.771871 & 0.777543 & 0.0055 \\
+FA & 3 & 0.815630 & 0.814227 & 0.0052 \\
+\bottomrule
+\end{tabular}
diff --git a/outputs/tables/finite_time_cells.tex b/outputs/tables/finite_time_cells.tex
new file mode 100644
index 0000000..20f76be
--- /dev/null
+++ b/outputs/tables/finite_time_cells.tex
@@ -0,0 +1,21 @@
+\begin{tabular}{@{}rrccccc@{}}
+\toprule
+Depth & Width & Measured & SE & Frozen & Linear & Relinearized \\
+\midrule
+1 & 32 & 0.051369 & 0.0079 & 0.057429 & 0.051108 & 0.053289 \\
+1 & 64 & 0.042081 & 0.0026 & 0.046148 & 0.041747 & 0.043214 \\
+1 & 96 & 0.040667 & 0.0041 & 0.044705 & 0.040255 & 0.041735 \\
+2 & 32 & 0.199114 & 0.015 & 0.245567 & 0.196161 & 0.213008 \\
+2 & 64 & 0.152697 & 0.0082 & 0.176001 & 0.150869 & 0.159079 \\
+2 & 96 & 0.218336 & 0.022 & 0.247394 & 0.216029 & 0.225711 \\
+3 & 32 & 0.206504 & 0.037 & 0.278753 & 0.196695 & 0.226089 \\
+3 & 64 & 0.252548 & 0.035 & 0.301208 & 0.246641 & 0.263831 \\
+3 & 96 & 0.312576 & 0.029 & 0.376889 & 0.306903 & 0.326215 \\
+4 & 32 & 0.222365 & 0.061 & 0.285694 & 0.212004 & 0.236205 \\
+4 & 64 & 0.281210 & 0.013 & 0.360586 & 0.274093 & 0.302059 \\
+4 & 96 & 0.451119 & 0.02 & 0.554664 & 0.441827 & 0.473896 \\
+6 & 32 & 0.202818 & 0.0058 & 0.291825 & 0.206767 & 0.221531 \\
+6 & 64 & 0.346053 & 0.042 & 0.518519 & 0.312131 & 0.371649 \\
+6 & 96 & 0.535727 & 0.032 & 0.733133 & 0.501304 & 0.565975 \\
+\bottomrule
+\end{tabular}
diff --git a/outputs/tables/initialization_rows.tex b/outputs/tables/initialization_rows.tex
new file mode 100644
index 0000000..0654013
--- /dev/null
+++ b/outputs/tables/initialization_rows.tex
@@ -0,0 +1,36 @@
+\begin{tabular}{@{}rrccc@{}}
+\toprule
+Depth & Init & Prediction & FA measured (SE) & DFA measured (SE) \\
+\midrule
+1 & 0 & 0.053588 & 0.052887 (0.00037) & 0.053807 (0.00041) \\
+1 & 1 & 0.062410 & 0.062244 (0.00048) & 0.062625 (0.00048) \\
+1 & 2 & 0.028953 & 0.029159 (0.00023) & 0.029212 (0.00023) \\
+1 & 3 & 0.040257 & 0.040253 (0.00028) & 0.040521 (0.00028) \\
+1 & 4 & 0.038773 & 0.038649 (0.00032) & 0.039119 (0.00031) \\
+1 & 5 & 0.078297 & 0.078008 (0.0006) & 0.078183 (0.00056) \\
+2 & 0 & 0.218902 & 0.218122 (0.0024) & 0.221537 (0.0024) \\
+2 & 1 & 0.279596 & 0.280372 (0.0027) & 0.280990 (0.0025) \\
+2 & 2 & 0.364830 & 0.361380 (0.003) & 0.364535 (0.003) \\
+2 & 3 & 0.307008 & 0.306619 (0.0024) & 0.309576 (0.0025) \\
+2 & 4 & 0.182403 & 0.181656 (0.0021) & 0.182641 (0.0023) \\
+2 & 5 & 0.309058 & 0.307749 (0.0023) & 0.309189 (0.0022) \\
+3 & 0 & 0.470739 & 0.468836 (0.0036) & 0.466214 (0.0041) \\
+3 & 1 & 0.444351 & 0.446781 (0.0033) & 0.448788 (0.0034) \\
+3 & 2 & 0.374155 & 0.373663 (0.0027) & 0.373020 (0.0032) \\
+3 & 3 & 0.277165 & 0.276679 (0.0039) & 0.278645 (0.0043) \\
+3 & 4 & 0.368780 & 0.367594 (0.0037) & 0.369790 (0.0039) \\
+3 & 5 & 0.480622 & 0.479752 (0.0036) & 0.477239 (0.0039) \\
+4 & 0 & 0.509811 & 0.507382 (0.0033) & 0.507785 (0.0036) \\
+4 & 1 & 0.504652 & 0.502008 (0.0033) & 0.501042 (0.0039) \\
+4 & 2 & 0.433303 & 0.429889 (0.0037) & 0.437931 (0.0041) \\
+4 & 3 & 0.493355 & 0.498489 (0.004) & 0.490059 (0.0045) \\
+4 & 4 & 0.282292 & 0.278860 (0.0029) & 0.278743 (0.0027) \\
+4 & 5 & 0.527837 & 0.525461 (0.0035) & 0.525114 (0.004) \\
+6 & 0 & 0.655509 & 0.660608 (0.0035) & 0.652847 (0.0043) \\
+6 & 1 & 0.694866 & 0.703226 (0.0049) & 0.702721 (0.0051) \\
+6 & 2 & 0.688833 & 0.689167 (0.004) & 0.687606 (0.0044) \\
+6 & 3 & 0.497143 & 0.494329 (0.0032) & 0.491664 (0.0035) \\
+6 & 4 & 0.595326 & 0.586449 (0.0038) & 0.591266 (0.0037) \\
+6 & 5 & 0.607480 & 0.611624 (0.0038) & 0.616644 (0.0038) \\
+\bottomrule
+\end{tabular}
diff --git a/outputs/tables/learning_rate_regimes.tex b/outputs/tables/learning_rate_regimes.tex
new file mode 100644
index 0000000..85a8048
--- /dev/null
+++ b/outputs/tables/learning_rate_regimes.tex
@@ -0,0 +1,21 @@
+\begin{tabular}{@{}rlcccc@{}}
+\toprule
+Depth & Regime & BP rate & Mean FA rate & Gap & SE \\
+\midrule
+1 & Same rate & 0.001 & 0.001 & 0.05906 & 0.0039 \\
+1 & Initial compensation & 0.001 & 0.001041 & 0.04053 & 0.0031 \\
+1 & Independently selected & 0.128 & 0.064 & 0.56940 & 0.01 \\
+2 & Same rate & 0.001 & 0.001 & 0.19917 & 0.014 \\
+2 & Initial compensation & 0.001 & 0.001317 & 0.09729 & 0.01 \\
+2 & Independently selected & 0.128 & 0.032 & 0.64210 & 0.051 \\
+3 & Same rate & 0.001 & 0.001 & 0.27346 & 0.026 \\
+3 & Initial compensation & 0.001 & 0.001607 & 0.16262 & 0.024 \\
+3 & Independently selected & 0.064 & 0.016 & 1.13002 & 0.024 \\
+4 & Same rate & 0.001 & 0.001 & 0.29340 & 0.021 \\
+4 & Initial compensation & 0.001 & 0.001917 & 0.18442 & 0.017 \\
+4 & Independently selected & 0.064 & 0.016 & 1.30812 & 0.06 \\
+6 & Same rate & 0.001 & 0.001 & 0.40664 & 0.038 \\
+6 & Initial compensation & 0.001 & 0.002591 & 0.28850 & 0.027 \\
+6 & Independently selected & 0.064 & 0.004 & 1.75739 & 0.026 \\
+\bottomrule
+\end{tabular}